Daidzin_HS-578T Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Daidzin perturbation in HS-578T cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Daidzin_HS-578T drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
VEGFA vascular endothelial growth factor A 0.209055
MYH9 myosin, heavy chain 9, non-muscle 0.137122
NDRG1 N-myc downstream regulated 1 0.131929
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.111196
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.1051
TM4SF1 transmembrane 4 L six family member 1 0.0932408
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 0.0900995
STC1 stanniocalcin 1 0.0865759
PRELID2 PRELI domain containing 2 0.0795266
LOXL2 lysyl oxidase-like 2 0.0791868
GOLGA4 golgin A4 0.077251
ATP13A3 ATPase type 13A3 0.0772453
ELL2 elongation factor, RNA polymerase II, 2 0.0765518
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0738541
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0694514
TRIO trio Rho guanine nucleotide exchange factor 0.0657173
PDE10A phosphodiesterase 10A 0.0613743
CALR calreticulin 0.0604324
TIMP3 TIMP metallopeptidase inhibitor 3 0.0512044
TMEM158 transmembrane protein 158 (gene/pseudogene) 0.0511427
CENPF centromere protein F, 350/400kDa 0.0501112
BHLHE40 basic helix-loop-helix family, member e40 0.0478381
RPS6 ribosomal protein S6 0.0474564
KLF7 Kruppel-like factor 7 (ubiquitous) 0.046881
ERRFI1 ERBB receptor feedback inhibitor 1 0.045998
MKI67 marker of proliferation Ki-67 0.0454539
UBR5 ubiquitin protein ligase E3 component n-recognin 5 0.0450967
ENO1 enolase 1, (alpha) 0.0449646
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) 0.044782
ASPH aspartate beta-hydroxylase 0.0443202
PTMA prothymosin, alpha 0.0438298
TMF1 TATA element modulatory factor 1 0.0436891
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.0436447
TPR translocated promoter region, nuclear basket protein 0.0432742
COL6A3 collagen, type VI, alpha 3 0.0431472
ARRDC3 arrestin domain containing 3 0.0430135
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0429436
CAMTA1 calmodulin binding transcription activator 1 0.0417658
RRBP1 ribosome binding protein 1 0.040939
P4HA2 prolyl 4-hydroxylase, alpha polypeptide II 0.0408089
NAV2 neuron navigator 2 0.0403967
INHBA inhibin, beta A 0.0400977
MACF1 microtubule-actin crosslinking factor 1 0.0389375
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0389117
DST dystonin 0.0382034
BZW1 basic leucine zipper and W2 domains 1 0.0371356
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.037025
AKAP9 A kinase (PRKA) anchor protein 9 0.0367149
HSPA8 heat shock 70kDa protein 8 0.035952
FAM219A family with sequence similarity 219, member A 0.0358022
BIRC6 baculoviral IAP repeat containing 6 0.0357374
SBF2 SET binding factor 2 0.0353093
APP amyloid beta (A4) precursor protein 0.0352308
ANKRD12 ankyrin repeat domain 12 0.0346692
TNKS tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 0.0342627
TNIP1 TNFAIP3 interacting protein 1 0.0341115
DOCK5 dedicator of cytokinesis 5 0.0339398
FMNL2 formin-like 2 0.03384
UBC ubiquitin C 0.033745
RPS2 ribosomal protein S2 0.033663
RBM39 RNA binding motif protein 39 0.0335958
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0335602
ANKRD11 ankyrin repeat domain 11 0.0331615
SMAD3 SMAD family member 3 0.0329213
ANTXR2 anthrax toxin receptor 2 0.032728
COG5 component of oligomeric golgi complex 5 0.0325496
H1-4 H1.4 linker histone, cluster member 0.0321721
RPS3 ribosomal protein S3 0.0315396
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 0.0313981
FLNB filamin B, beta 0.0311694
SENP5 SUMO1/sentrin specific peptidase 5 0.0304853
CENPE centromere protein E, 312kDa 0.0303952
PJA2 praja ring finger 2, E3 ubiquitin protein ligase 0.0302712
RERE arginine-glutamic acid dipeptide (RE) repeats 0.0301094
GYS1 glycogen synthase 1 (muscle) 0.0297673
AP3B1 adaptor-related protein complex 3, beta 1 subunit 0.0290079
SEC61A1 Sec61 alpha 1 subunit (S. cerevisiae) 0.028963
ANLN anillin, actin binding protein 0.028848
RPL37A ribosomal protein L37a 0.0288386
RND3 Rho family GTPase 3 0.0286263
COL4A1 collagen, type IV, alpha 1 0.0286245
ANO6 anoctamin 6 0.0283703
CKAP5 cytoskeleton associated protein 5 0.0283301
MTSS1 metastasis suppressor 1 0.0282161
NFE2L1 nuclear factor, erythroid 2-like 1 0.0281098
PTK2 protein tyrosine kinase 2 0.0278817
GOLT1B golgi transport 1B 0.0276558
RAI14 retinoic acid induced 14 0.0274042
ATF4 activating transcription factor 4 0.0273958
IQGAP1 IQ motif containing GTPase activating protein 1 0.0273223
RPS8 ribosomal protein S8 0.027245
YEATS2 YEATS domain containing 2 0.0269281
ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 0.0268297
FBXL13 F-box and leucine-rich repeat protein 13 0.026753
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0267244
HADHA hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit 0.0267184
COL3A1 collagen, type III, alpha 1 0.0262073
NUMB numb homolog (Drosophila) 0.0261636
ARFGAP3 ADP-ribosylation factor GTPase activating protein 3 0.0261613
RB1CC1 RB1-inducible coiled-coil 1 0.0260693

decreased expression

Symbol Name Standardized Value
IGFBP3 insulin-like growth factor binding protein 3 -0.189414
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.128972
SPARC secreted protein, acidic, cysteine-rich (osteonectin) -0.122566
CADM1 cell adhesion molecule 1 -0.10603
FN1 fibronectin 1 -0.078719
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0759748
MT2A metallothionein 2A -0.0758375
VIM vimentin -0.0752236
CXCL8 chemokine (C-X-C motif) ligand 8 -0.0742084
ALCAM activated leukocyte cell adhesion molecule -0.0708048
FNDC3B fibronectin type III domain containing 3B -0.0701342
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 -0.0684271
FBN1 fibrillin 1 -0.0627529
CDH13 cadherin 13 -0.0627388
SLC39A14 solute carrier family 39 (zinc transporter), member 14 -0.0616154
FTH1 ferritin, heavy polypeptide 1 -0.0587331
TSC22D2 TSC22 domain family, member 2 -0.0553851
NKAIN3 Na+/K+ transporting ATPase interacting 3 -0.0532457
CYB5R3 cytochrome b5 reductase 3 -0.0517691
SLC4A7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 -0.0500807
MARCKS myristoylated alanine-rich protein kinase C substrate -0.0483665
IER3 immediate early response 3 -0.0470472
EGR1 early growth response 1 -0.046051
POTEF POTE ankyrin domain family, member F -0.0459048
MT1X metallothionein 1X -0.0448168
EDIL3 EGF-like repeats and discoidin I-like domains 3 -0.0446257
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.0424572
PDIA3 protein disulfide isomerase family A, member 3 -0.0419441
LOC112694756 uncharaterized LOC112694756 -0.0415983
ZFPM2 zinc finger protein, FOG family member 2 -0.0394061
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0393582
MBNL1 muscleblind-like splicing regulator 1 -0.0385502
PALLD palladin, cytoskeletal associated protein -0.038181
TMSB10 thymosin beta 10 -0.0378406
CCND1 cyclin D1 -0.0373881
IL6ST interleukin 6 signal transducer -0.0368816
COPB2 coatomer protein complex, subunit beta 2 (beta prime) -0.0364363
HMGA1 high mobility group AT-hook 1 -0.0354996
ACTG1 actin gamma 1 -0.0354422
CSF1 colony stimulating factor 1 (macrophage) -0.0353124
PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 -0.034869
EGFR epidermal growth factor receptor -0.0345737
LGALS1 lectin, galactoside-binding, soluble, 1 -0.0342897
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase -0.0338874
SPOCK1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 -0.0323771
ABI3BP ABI family, member 3 (NESH) binding protein -0.0323275
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0320706
NREP neuronal regeneration related protein -0.03166
FTL ferritin, light polypeptide -0.0308235
LAMC1 laminin, gamma 1 (formerly LAMB2) -0.0306126
NABP1 nucleic acid binding protein 1 -0.0304772
LOX lysyl oxidase -0.0304452
TAPBP TAP binding protein (tapasin) -0.0300958
NEK10 NIMA-related kinase 10 -0.0299397
RYBP RING1 and YY1 binding protein -0.029701
PDLIM5 PDZ and LIM domain 5 -0.029695
CNTN5 contactin 5 -0.029565
FLNA filamin A, alpha -0.0295622
CALD1 caldesmon 1 -0.0291845
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0291193
RPLP0 ribosomal protein, large, P0 -0.0290945
TRAM1 translocation associated membrane protein 1 -0.0289777
RAB7A RAB7A, member RAS oncogene family -0.028891
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 -0.0288005
COL6A2 collagen, type VI, alpha 2 -0.0285193
ZFAND3 zinc finger, AN1-type domain 3 -0.0282119
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0281069
CDH2 cadherin 2, type 1, N-cadherin (neuronal) -0.0280071
COL7A1 collagen, type VII, alpha 1 -0.0279972
DGKI diacylglycerol kinase, iota -0.0279771
MYO10 myosin X -0.0278936
S100A10 S100 calcium binding protein A10 -0.0278692
QKI QKI, KH domain containing, RNA binding -0.0271768
SH3BGRL3 SH3 domain binding glutamate-rich protein like 3 -0.0265886
AGRN agrin -0.0265095
ICAM1 intercellular adhesion molecule 1 -0.0264429
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 -0.0257261
CAV1 caveolin 1, caveolae protein, 22kDa -0.0256291
PFN1 profilin 1 -0.024996
AHR aryl hydrocarbon receptor -0.0248738
FOXP1 forkhead box P1 -0.0248215
VCL vinculin -0.0247756
MAP1B microtubule-associated protein 1B -0.02451
ZNF644 zinc finger protein 644 -0.0244818
LOC102724023 ES1 protein homolog, mitochondrial -0.024098
TPM1 tropomyosin 1 (alpha) -0.0240054
IARS1 isoleucyl-tRNA synthetase 1 -0.0239363
GLS2 glutaminase 2 (liver, mitochondrial) -0.0237366
PNRC1 proline-rich nuclear receptor coactivator 1 -0.0237021
TRPS1 trichorhinophalangeal syndrome I -0.0234594
HSPG2 heparan sulfate proteoglycan 2 -0.0229462
NOTCH2 notch 2 -0.0225459
SQSTM1 sequestosome 1 -0.0224009
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0223017
RPL35A ribosomal protein L35a -0.0222842
IFITM3 interferon induced transmembrane protein 3 -0.0221533
BSG basigin (Ok blood group) -0.0211902
TIMP2 TIMP metallopeptidase inhibitor 2 -0.0211862
ZFP36L1 ZFP36 ring finger protein-like 1 -0.0210381
RPL28 ribosomal protein L28 -0.0209671