Decitabine_HepG2/C3A Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Decitabine perturbation in HepG2/C3A cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Decitabine_HepG2/C3A drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 0.373194
APOB apolipoprotein B 0.27067
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.12627
C3 complement component 3 0.11364
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.1064
LOC112694756 uncharaterized LOC112694756 0.0983712
GPC3 glypican 3 0.0921212
SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 0.0808972
FN1 fibronectin 1 0.0804225
RPL3 ribosomal protein L3 0.0767257
MYH9 myosin, heavy chain 9, non-muscle 0.0731187
DSPP dentin sialophosphoprotein 0.0726265
SDC4 syndecan 4 0.0713464
ENO1 enolase 1, (alpha) 0.070239
FBF1 Fas (TNFRSF6) binding factor 1 0.0610292
TPT1 tumor protein, translationally-controlled 1 0.0594345
EEF2 eukaryotic translation elongation factor 2 0.056756
VPS54 vacuolar protein sorting 54 homolog (S. cerevisiae) 0.0556823
NKD1 naked cuticle homolog 1 (Drosophila) 0.0534005
ACSL4 acyl-CoA synthetase long-chain family member 4 0.0502123
A2M alpha-2-macroglobulin 0.0497734
TM4SF1 transmembrane 4 L six family member 1 0.0497091
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.047812
TF transferrin 0.0471243
RPS6 ribosomal protein S6 0.0447476
SFTPA2 surfactant protein A2 0.044023
ZMYND8 zinc finger, MYND-type containing 8 0.0438045
PRRC2C proline-rich coiled-coil 2C 0.0434297
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0434262
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0432268
CPE carboxypeptidase E 0.0410848
AFDN afadin, adherens junction formation factor 0.041073
GPAM glycerol-3-phosphate acyltransferase, mitochondrial 0.0402488
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0396232
LYZ lysozyme 0.0390955
PLEC plectin 0.0387482
ELL2 elongation factor, RNA polymerase II, 2 0.0386936
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.037265
MRTFA myocardin related transcription factor A 0.0370147
TPM4 tropomyosin 4 0.03589
PEG3 paternally expressed 3 0.0358875
MATR3 matrin 3 0.0357673
ENAH enabled homolog (Drosophila) 0.0350937
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0346881
BCL2L1 BCL2-like 1 0.0339126
RPLP0 ribosomal protein, large, P0 0.0328246
SNX9 sorting nexin 9 0.032003
RPL9 ribosomal protein L9 0.0317794
TNFAIP3 tumor necrosis factor, alpha-induced protein 3 0.0316853
ARHGAP5 Rho GTPase activating protein 5 0.0316233
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 0.0315794
DSTN destrin (actin depolymerizing factor) 0.0314044
ARHGEF18 Rho/Rac guanine nucleotide exchange factor (GEF) 18 0.0309551
MARCKS myristoylated alanine-rich protein kinase C substrate 0.0308213
AKAP12 A kinase (PRKA) anchor protein 12 0.0301068
ACTN4 actinin, alpha 4 0.0300796
SETD5 SET domain containing 5 0.0299499
KPNB1 karyopherin (importin) beta 1 0.0298024
CCL20 chemokine (C-C motif) ligand 20 0.029473
EIF3A eukaryotic translation initiation factor 3, subunit A 0.0292056
KTN1 kinectin 1 (kinesin receptor) 0.0289626
PTPN12 protein tyrosine phosphatase, non-receptor type 12 0.0283109
APLP2 amyloid beta (A4) precursor-like protein 2 0.028211
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 0.0281198
RTN4 reticulon 4 0.0280905
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0280476
KIF5B kinesin family member 5B 0.027977
CFB complement factor B 0.0278773
SMURF1 SMAD specific E3 ubiquitin protein ligase 1 0.0277973
WDR45B WD repeat domain 45B 0.0277711
UBC ubiquitin C 0.0277604
PTBP3 polypyrimidine tract binding protein 3 0.0275564
PERP PERP, TP53 apoptosis effector 0.0273624
ECE1 endothelin converting enzyme 1 0.0273309
TGFBR2 transforming growth factor, beta receptor II (70/80kDa) 0.0273168
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0272479
NFKBIA nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha 0.0268392
PSMD2 proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 0.0264162
SVIL supervillin 0.026203
PNRC1 proline-rich nuclear receptor coactivator 1 0.0260501
LYPLA1 lysophospholipase I 0.025863
YAP1 Yes-associated protein 1 0.0258364
RPL35A ribosomal protein L35a 0.0257668
ATP1A4 ATPase, Na+/K+ transporting, alpha 4 polypeptide 0.0256888
IFNGR1 interferon gamma receptor 1 0.025631
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 0.0256242
UBE2B ubiquitin-conjugating enzyme E2B 0.0255501
UBE2D2 ubiquitin-conjugating enzyme E2D 2 0.0253467
DEK DEK proto-oncogene 0.0252752
PHIP pleckstrin homology domain interacting protein 0.0250509
RPLP1 ribosomal protein, large, P1 0.0248056
ARHGAP9 Rho GTPase activating protein 9 0.0247214
NDUFV2 NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa 0.0246721
ADAR adenosine deaminase, RNA-specific 0.0245942
ZFR zinc finger RNA binding protein 0.0245495
AKAP9 A kinase (PRKA) anchor protein 9 0.0242421
LSM14A LSM14A, SCD6 homolog A (S. cerevisiae) 0.0242204
OSMR oncostatin M receptor 0.0241657
TM9SF3 transmembrane 9 superfamily member 3 0.0241402
FAT1 FAT atypical cadherin 1 0.0241324

decreased expression

Symbol Name Standardized Value
IGF2 insulin-like growth factor 2 -0.22056
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) -0.123909
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0942603
MT2A metallothionein 2A -0.0818354
SAMD4A sterile alpha motif domain containing 4A -0.0776326
EHBP1 EH domain binding protein 1 -0.0765891
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0742835
ASPH aspartate beta-hydroxylase -0.0669145
ATXN1 ataxin 1 -0.0667164
RPL37A ribosomal protein L37a -0.0665128
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 -0.0658369
RERE arginine-glutamic acid dipeptide (RE) repeats -0.0643219
INTS6 integrator complex subunit 6 -0.0617325
GPC6 glypican 6 -0.0606092
PDLIM5 PDZ and LIM domain 5 -0.0605422
DTNA dystrobrevin, alpha -0.0604567
RPS3 ribosomal protein S3 -0.0582653
GMDS GDP-mannose 4,6-dehydratase -0.0580218
APOA2 apolipoprotein A-II -0.056835
RPL31 ribosomal protein L31 -0.0491761
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0456389
VEGFA vascular endothelial growth factor A -0.0415439
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 -0.0412171
GK glycerol kinase -0.0409787
TAS2R14 taste receptor, type 2, member 14 -0.0408898
APOC1 apolipoprotein C-I -0.0372607
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 -0.0370732
KDM4C lysine (K)-specific demethylase 4C -0.0348932
HDAC4 histone deacetylase 4 -0.0339359
ZHX2 zinc fingers and homeoboxes 2 -0.0335645
TIMP1 TIMP metallopeptidase inhibitor 1 -0.0331483
DST dystonin -0.0324259
ARHGAP26 Rho GTPase activating protein 26 -0.0312361
SIPA1L1 signal-induced proliferation-associated 1 like 1 -0.0309895
ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila) -0.0307933
CHST15 carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15 -0.0307545
RPS12 ribosomal protein S12 -0.0305093
MALRD1 MAM and LDL receptor class A domain containing 1 -0.0304393
RPS17 ribosomal protein S17 -0.0302485
NABP1 nucleic acid binding protein 1 -0.0302271
RUNX1 runt-related transcription factor 1 -0.0298381
CP ceruloplasmin (ferroxidase) -0.0293838
TNS1 tensin 1 -0.0277661
ZFAND3 zinc finger, AN1-type domain 3 -0.0276542
NPAS2 neuronal PAS domain protein 2 -0.027654
MBNL2 muscleblind-like splicing regulator 2 -0.0269673
SPIRE1 spire-type actin nucleation factor 1 -0.0267633
RIGI RNA sensor RIG-I -0.0263444
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 -0.0262187
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 -0.0259861
NDRG1 N-myc downstream regulated 1 -0.0257398
FAM13A family with sequence similarity 13, member A -0.0253341
GLS2 glutaminase 2 (liver, mitochondrial) -0.0253158
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0249986
RPL13A ribosomal protein L13a -0.0244315
RPS13 ribosomal protein S13 -0.0242502
RBM39 RNA binding motif protein 39 -0.0238179
CNOT1 CCR4-NOT transcription complex, subunit 1 -0.023813
ZRANB1 zinc finger, RAN-binding domain containing 1 -0.0235827
GOLGB1 golgin B1 -0.023362
ZBTB20 zinc finger and BTB domain containing 20 -0.0233141
IARS1 isoleucyl-tRNA synthetase 1 -0.023049
FKTN fukutin -0.0229218
PUM2 pumilio RNA-binding family member 2 -0.0227008
RPS19 ribosomal protein S19 -0.0226665
ATP10A ATPase, class V, type 10A -0.0221795
RPL7A ribosomal protein L7a -0.0221118
SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) -0.0220564
RALY RALY heterogeneous nuclear ribonucleoprotein -0.0218408
LRMDA leucine rich melanocyte differentiation associated -0.0218324
ERN1 endoplasmic reticulum to nucleus signaling 1 -0.0216095
SUPT3H suppressor of Ty 3 homolog (S. cerevisiae) -0.0215185
FAM53C family with sequence similarity 53, member C -0.0214835
GRB10 growth factor receptor-bound protein 10 -0.0214047
MAML2 mastermind-like 2 (Drosophila) -0.0214035
ETFB electron-transfer-flavoprotein, beta polypeptide -0.0212765
WWC2 WW and C2 domain containing 2 -0.0212279
PEAK1 pseudopodium-enriched atypical kinase 1 -0.0210762
EPAS1 endothelial PAS domain protein 1 -0.0206379
STK17A serine/threonine kinase 17a -0.0198574
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) -0.0197407
PRDM2 PR domain containing 2, with ZNF domain -0.0196841
ARHGAP21 Rho GTPase activating protein 21 -0.0196349
DDX17 DEAD (Asp-Glu-Ala-Asp) box helicase 17 -0.0194858
STC2 stanniocalcin 2 -0.0194112
RPS10 ribosomal protein S10 -0.019345
PCCA propionyl CoA carboxylase, alpha polypeptide -0.0192127
SLC9A1 solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 -0.019181
RPS6KA3 ribosomal protein S6 kinase, 90kDa, polypeptide 3 -0.0189006
PTPRM protein tyrosine phosphatase, receptor type, M -0.0187969
PTPRN2 protein tyrosine phosphatase, receptor type, N polypeptide 2 -0.0186555
SERINC5 serine incorporator 5 -0.0185272
RPLP2 ribosomal protein, large, P2 -0.0184703
PTPRG protein tyrosine phosphatase, receptor type, G -0.018452
BBX bobby sox homolog (Drosophila) -0.0183048
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 -0.0182689
UBE2D1 ubiquitin-conjugating enzyme E2D 1 -0.0182161
ABHD3 abhydrolase domain containing 3 -0.0182141
MYO6 myosin VI -0.0181129
ANO6 anoctamin 6 -0.0179352