Decitabine_NCI-H460 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Decitabine perturbation in NCI-H460 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Decitabine_NCI-H460 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.154947
NAMPT nicotinamide phosphoribosyltransferase 0.100434
FN1 fibronectin 1 0.0916687
MCL1 myeloid cell leukemia 1 0.087006
RPL3 ribosomal protein L3 0.0807601
EEF2 eukaryotic translation elongation factor 2 0.0796465
CXCL8 chemokine (C-X-C motif) ligand 8 0.074548
LOC112694756 uncharaterized LOC112694756 0.0678289
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0672163
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.0651321
ELL2 elongation factor, RNA polymerase II, 2 0.061559
TRIO trio Rho guanine nucleotide exchange factor 0.0589328
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0552881
FLNB filamin B, beta 0.0551831
TNFAIP3 tumor necrosis factor, alpha-induced protein 3 0.0502133
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0475209
OGA O-GlcNAcase 0.0463797
SPAG9 sperm associated antigen 9 0.0461105
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.045161
DDIT4 DNA-damage-inducible transcript 4 0.0448723
ERRFI1 ERBB receptor feedback inhibitor 1 0.0446877
TM4SF1 transmembrane 4 L six family member 1 0.044676
TNIP1 TNFAIP3 interacting protein 1 0.0425257
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0410252
EZR ezrin 0.0405931
TXNRD1 thioredoxin reductase 1 0.0398522
MSN moesin 0.0394731
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0392775
ESYT2 extended synaptotagmin-like protein 2 0.0380266
PGK1 phosphoglycerate kinase 1 0.0378359
EIF4A1 eukaryotic translation initiation factor 4A1 0.0373793
LDHA lactate dehydrogenase A 0.0369298
UBC ubiquitin C 0.0357851
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa 0.0351885
ARRDC3 arrestin domain containing 3 0.0349657
HSPA8 heat shock 70kDa protein 8 0.0344512
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0343971
LAMC1 laminin, gamma 1 (formerly LAMB2) 0.0343068
NUP58 nucleoporin 58 0.0342538
PPIA peptidylprolyl isomerase A (cyclophilin A) 0.0339226
RTN4 reticulon 4 0.0338224
UBA6 ubiquitin-like modifier activating enzyme 6 0.0330547
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0326309
MKI67 marker of proliferation Ki-67 0.0325118
ATP13A3 ATPase type 13A3 0.0316196
CD109 CD109 molecule 0.0309296
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0300291
PKM pyruvate kinase, muscle 0.0299881
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) 0.0298922
WDR45B WD repeat domain 45B 0.0298434
CTSL cathepsin L 0.0294461
FLNA filamin A, alpha 0.028534
PDGFA platelet-derived growth factor alpha polypeptide 0.0284893
NEK7 NIMA-related kinase 7 0.0279138
TGFBR1 transforming growth factor, beta receptor 1 0.0271332
ITPRID2 ITPR interacting domain containing 2 0.0268082
MYOF myoferlin 0.0266474
NCKAP1 NCK-associated protein 1 0.0261863
APLP2 amyloid beta (A4) precursor-like protein 2 0.0260871
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0260721
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0260622
PJA2 praja ring finger 2, E3 ubiquitin protein ligase 0.0260483
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 0.0259452
SOD2 superoxide dismutase 2, mitochondrial 0.0258635
PCBP2 poly(rC) binding protein 2 0.0256901
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 0.0252426
BIRC6 baculoviral IAP repeat containing 6 0.0249957
TPI1 triosephosphate isomerase 1 0.024535
SLC38A2 solute carrier family 38, member 2 0.0243902
ECT2 epithelial cell transforming 2 0.0242258
MYH9 myosin, heavy chain 9, non-muscle 0.0240696
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0238961
NDRG1 N-myc downstream regulated 1 0.0236506
STARD4 StAR-related lipid transfer (START) domain containing 4 0.0236054
CXCL5 chemokine (C-X-C motif) ligand 5 0.0230954
UBR4 ubiquitin protein ligase E3 component n-recognin 4 0.0230173
FAM13A family with sequence similarity 13, member A 0.0229818
TPM3 tropomyosin 3 0.0229259
HELZ helicase with zinc finger 0.022857
KDM6A lysine (K)-specific demethylase 6A 0.0228059
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.022638
RAI1 retinoic acid induced 1 0.022635
CDC73 cell division cycle 73 0.0226099
POTEF POTE ankyrin domain family, member F 0.0224907
ADAM9 ADAM metallopeptidase domain 9 0.0224894
FNDC3B fibronectin type III domain containing 3B 0.0224432
NONO non-POU domain containing, octamer-binding 0.0224417
HOOK2 hook microtubule-tethering protein 2 0.0224014
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.022296
EPB41L3 erythrocyte membrane protein band 4.1-like 3 0.0219771
APP amyloid beta (A4) precursor protein 0.0217875
H1-4 H1.4 linker histone, cluster member 0.0217367
GRAMD1B GRAM domain containing 1B 0.0217016
MYO10 myosin X 0.0215473
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0215464
CNOT1 CCR4-NOT transcription complex, subunit 1 0.0213982
PDIA6 protein disulfide isomerase family A, member 6 0.0213838
TGFBI transforming growth factor, beta-induced, 68kDa 0.021321
EIF4H eukaryotic translation initiation factor 4H 0.0212717
BRWD3 bromodomain and WD repeat domain containing 3 0.0212148

decreased expression

Symbol Name Standardized Value
PDE4D phosphodiesterase 4D, cAMP-specific -0.310767
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.235545
PSD3 pleckstrin and Sec7 domain containing 3 -0.104616
VIM vimentin -0.0946248
CDH13 cadherin 13 -0.0913849
PDE10A phosphodiesterase 10A -0.0877006
PDE3A phosphodiesterase 3A, cGMP-inhibited -0.0863414
NALF1 NALCN channel auxiliary factor 1 -0.0828593
DPP10 dipeptidyl-peptidase 10 (non-functional) -0.0698333
MAML3 mastermind-like 3 (Drosophila) -0.0678323
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) -0.0673976
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0668568
COL5A2 collagen, type V, alpha 2 -0.066568
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 -0.0629376
PRKN parkin RBR E3 ubiquitin protein ligase -0.0624598
CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 -0.0568309
SMYD3 SET and MYND domain containing 3 -0.0532732
PLEKHA5 pleckstrin homology domain containing, family A member 5 -0.049693
RPLP1 ribosomal protein, large, P1 -0.0486055
P3H2 prolyl 3-hydroxylase 2 -0.0485828
TPT1 tumor protein, translationally-controlled 1 -0.0471513
RPS6 ribosomal protein S6 -0.0470317
RPL35A ribosomal protein L35a -0.0438677
LSAMP limbic system-associated membrane protein -0.0438249
PTMA prothymosin, alpha -0.0437155
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0433787
PTPRM protein tyrosine phosphatase, receptor type, M -0.0423693
RPS8 ribosomal protein S8 -0.041608
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0406476
ADARB2 adenosine deaminase, RNA-specific, B2 (non-functional) -0.0367969
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase -0.0358487
PDLIM5 PDZ and LIM domain 5 -0.0342489
CADM2 cell adhesion molecule 2 -0.0316284
CTNND2 catenin (cadherin-associated protein), delta 2 -0.031085
ANTXR1 anthrax toxin receptor 1 -0.030652
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 -0.0303322
ATRX alpha thalassemia/mental retardation syndrome X-linked -0.0298664
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0296993
KIAA0825 KIAA0825 -0.0296742
RPL31 ribosomal protein L31 -0.0289265
NCKAP5 NCK-associated protein 5 -0.0286106
TTC28 tetratricopeptide repeat domain 28 -0.0285776
RAD51B RAD51 paralog B -0.0282915
DST dystonin -0.0282631
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0281288
PCBP3 poly(rC) binding protein 3 -0.0280919
RPL34 ribosomal protein L34 -0.0279912
EXT1 exostosin glycosyltransferase 1 -0.0278569
RPL9 ribosomal protein L9 -0.0278313
DHRSX dehydrogenase/reductase (SDR family) X-linked -0.0277166
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.027044
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0265744
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 -0.0264788
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0255028
BCAS3 breast carcinoma amplified sequence 3 -0.0253485
RPLP0 ribosomal protein, large, P0 -0.0251631
RPS24 ribosomal protein S24 -0.0250136
WARS1 tryptophanyl-tRNA synthetase 1 -0.0242556
MAP7 microtubule-associated protein 7 -0.0238223
SPOCK1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 -0.0236225
CUX1 cut-like homeobox 1 -0.023174
COL4A5 collagen, type IV, alpha 5 -0.0226273
PDE7B phosphodiesterase 7B -0.0224215
PCDH15 protocadherin-related 15 -0.0221627
AUTS2 autism susceptibility candidate 2 -0.021899
ZBTB20 zinc finger and BTB domain containing 20 -0.0218306
RPL26 ribosomal protein L26 -0.0215265
FNDC3A fibronectin type III domain containing 3A -0.0209261
SOX4 SRY (sex determining region Y)-box 4 -0.0201537
TENM3 teneurin transmembrane protein 3 -0.0200679
XYLT1 xylosyltransferase I -0.0200351
RPS14 ribosomal protein S14 -0.0199173
BPTF bromodomain PHD finger transcription factor -0.0197216
RPS27 ribosomal protein S27 -0.0191554
CLIP1 CAP-GLY domain containing linker protein 1 -0.0190787
SH3KBP1 SH3-domain kinase binding protein 1 -0.0190071
STEAP1B STEAP family member 1B -0.0189058
ERC2 ELKS/RAB6-interacting/CAST family member 2 -0.0189046
ADGRD1 adhesion G protein-coupled receptor D1 -0.018848
INTS6 integrator complex subunit 6 -0.0187729
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0187501
MBD5 methyl-CpG binding domain protein 5 -0.0184281
S100A6 S100 calcium binding protein A6 -0.0184205
VCL vinculin -0.0183527
DOCK5 dedicator of cytokinesis 5 -0.0182555
RTN1 reticulon 1 -0.0182332
R3HDM2 R3H domain containing 2 -0.0181719
RANBP17 RAN binding protein 17 -0.018147
NT5C2 5'-nucleotidase, cytosolic II -0.0177095
EXOC4 exocyst complex component 4 -0.0176612
AEBP2 AE binding protein 2 -0.0172813
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 -0.0172351
SLC7A2 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 -0.0169788
PRELID2 PRELI domain containing 2 -0.016881
PDE1A phosphodiesterase 1A, calmodulin-dependent -0.0168414
RAB31 RAB31, member RAS oncogene family -0.0167666
TPM4 tropomyosin 4 -0.0165573
RIGI RNA sensor RIG-I -0.0164698
RPL12 ribosomal protein L12 -0.0164282
THSD4 thrombospondin, type I, domain containing 4 -0.016217