Delamanid_SNU-1 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Delamanid perturbation in SNU-1 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Delamanid_SNU-1 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
TMSB4X thymosin beta 4, X-linked 0.333563
EEF2 eukaryotic translation elongation factor 2 0.202464
EIF4A2 eukaryotic translation initiation factor 4A2 0.0749875
FLNB filamin B, beta 0.0722443
SRRM2 serine/arginine repetitive matrix 2 0.0722263
RPL3 ribosomal protein L3 0.0698596
PTMA prothymosin, alpha 0.0691704
PDE4B phosphodiesterase 4B, cAMP-specific 0.0581859
ACTG1 actin gamma 1 0.0575925
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0571899
CAMTA1 calmodulin binding transcription activator 1 0.0547183
FBLN2 fibulin 2 0.0535895
HSPA8 heat shock 70kDa protein 8 0.0523145
EZR ezrin 0.0503205
PRELID2 PRELI domain containing 2 0.0498986
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.049632
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.0495937
ENO2 enolase 2 (gamma, neuronal) 0.0494203
PLEKHA4 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4 0.0477977
GNPDA1 glucosamine-6-phosphate deaminase 1 0.0466816
CALR calreticulin 0.0446009
EIF4B eukaryotic translation initiation factor 4B 0.0438375
APP amyloid beta (A4) precursor protein 0.0427311
PLXNA1 plexin A1 0.0424116
HDAC9 histone deacetylase 9 0.0416938
TMEM65 transmembrane protein 65 0.0395655
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0395009
SAMD4A sterile alpha motif domain containing 4A 0.0379231
MYOF myoferlin 0.0376482
TBC1D22A TBC1 domain family, member 22A 0.0370416
ARHGEF10 Rho guanine nucleotide exchange factor (GEF) 10 0.0369964
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0348291
RPL7A ribosomal protein L7a 0.0344624
PPP3CA protein phosphatase 3, catalytic subunit, alpha isozyme 0.0340812
EEF1G eukaryotic translation elongation factor 1 gamma 0.033281
CSF1 colony stimulating factor 1 (macrophage) 0.0332013
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.0330665
SPTBN1 spectrin, beta, non-erythrocytic 1 0.03286
DUSP4 dual specificity phosphatase 4 0.0321947
GLI2 GLI family zinc finger 2 0.0316546
SOX6 SRY (sex determining region Y)-box 6 0.0312648
LOXL3 lysyl oxidase-like 3 0.0311624
CEP250 centrosomal protein 250kDa 0.0308175
NFKB2 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) 0.0300695
EHBP1L1 EH domain binding protein 1-like 1 0.029675
DENND1A DENN/MADD domain containing 1A 0.0295332
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.0291372
AHNAK AHNAK nucleoprotein 0.0287949
YEATS2 YEATS domain containing 2 0.0281868
AMOTL2 angiomotin like 2 0.0281555
MKI67 marker of proliferation Ki-67 0.0280913
PRPF38B pre-mRNA processing factor 38B 0.0280173
NFE2L1 nuclear factor, erythroid 2-like 1 0.0275595
GFPT1 glutamine--fructose-6-phosphate transaminase 1 0.0270535
GSE1 Gse1 coiled-coil protein 0.026764
ASPHD1 aspartate beta-hydroxylase domain containing 1 0.0263651
EIF4H eukaryotic translation initiation factor 4H 0.0263538
ANKRD36B ankyrin repeat domain 36B 0.0261679
VEGFA vascular endothelial growth factor A 0.0258502
PTTG1IP pituitary tumor-transforming 1 interacting protein 0.0257854
HOOK2 hook microtubule-tethering protein 2 0.0254811
FAT1 FAT atypical cadherin 1 0.0248171
RPS4Y1 ribosomal protein S4, Y-linked 1 0.0246223
SPTAN1 spectrin, alpha, non-erythrocytic 1 0.0245222
CD47 CD47 molecule 0.0244746
DSCAM Down syndrome cell adhesion molecule 0.0244018
LPP LIM domain containing preferred translocation partner in lipoma 0.0242662
FAM13A family with sequence similarity 13, member A 0.024063
BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 0.0239337
MICAL2 microtubule associated monooxygenase, calponin and LIM domain containing 2 0.023904
ANXA3 annexin A3 0.0238602
FLNA filamin A, alpha 0.0237321
ZEB1 zinc finger E-box binding homeobox 1 0.0234465
SF3A1 splicing factor 3a, subunit 1, 120kDa 0.0232742
CTIF CBP80/20-dependent translation initiation factor 0.0232568
UNC13A unc-13 homolog A (C. elegans) 0.0229873
TRIM44 tripartite motif containing 44 0.0228671
BRD2 bromodomain containing 2 0.0226287
MAFF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F 0.0225741
PDGFC platelet derived growth factor C 0.0225137
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa 0.0221376
SFTPA2 surfactant protein A2 0.0220712
HDLBP high density lipoprotein binding protein 0.0218864
TPM4 tropomyosin 4 0.0214189
SUPT5H suppressor of Ty 5 homolog (S. cerevisiae) 0.021417
PMM2 phosphomannomutase 2 0.0213625
ZMIZ1 zinc finger, MIZ-type containing 1 0.0213107
ANKRD36 ankyrin repeat domain 36 0.0212389
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.020882
ARFGAP1 ADP-ribosylation factor GTPase activating protein 1 0.0206
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0204831
CASC3 cancer susceptibility candidate 3 0.0201519
CACNB4 calcium channel, voltage-dependent, beta 4 subunit 0.0200912
SFPQ splicing factor proline/glutamine-rich 0.0200024
FNIP1 folliculin interacting protein 1 0.0198611
GOLGA3 golgin A3 0.0198527
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 0.0198031
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0195322
RPL4 ribosomal protein L4 0.0195309
ADAM10 ADAM metallopeptidase domain 10 0.01945

decreased expression

Symbol Name Standardized Value
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.208214
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.15183
RPS6 ribosomal protein S6 -0.0930743
TPT1 tumor protein, translationally-controlled 1 -0.091432
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0861642
S100A6 S100 calcium binding protein A6 -0.0790097
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0778193
RPLP0 ribosomal protein, large, P0 -0.0776687
RPL34 ribosomal protein L34 -0.0721809
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0717346
RPLP1 ribosomal protein, large, P1 -0.0586091
PFN1 profilin 1 -0.0582965
RPLP2 ribosomal protein, large, P2 -0.0553405
RPS8 ribosomal protein S8 -0.0504195
RPS13 ribosomal protein S13 -0.0492957
RPL31 ribosomal protein L31 -0.0478028
PKM pyruvate kinase, muscle -0.0473769
RPL35A ribosomal protein L35a -0.0463983
NAP1L1 nucleosome assembly protein 1-like 1 -0.0453123
S100A4 S100 calcium binding protein A4 -0.0452733
RPL27A ribosomal protein L27a -0.0447088
CITED2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 -0.0443851
RPS24 ribosomal protein S24 -0.0437237
RPS19 ribosomal protein S19 -0.0426462
ZNF292 zinc finger protein 292 -0.0411186
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.039529
RPS25 ribosomal protein S25 -0.0390396
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa -0.0378577
RPS27A ribosomal protein S27a -0.0376464
HSPD1 heat shock 60kDa protein 1 (chaperonin) -0.0375176
RPS21 ribosomal protein S21 -0.0375159
RPS12 ribosomal protein S12 -0.0363975
RBM39 RNA binding motif protein 39 -0.0362312
MATR3 matrin 3 -0.0360283
HSPH1 heat shock 105kDa/110kDa protein 1 -0.0357516
FOXP1 forkhead box P1 -0.0352198
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0350554
JMJD1C jumonji domain containing 1C -0.034899
RPL12 ribosomal protein L12 -0.0347347
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 -0.0339798
RPS2 ribosomal protein S2 -0.0338406
S100A9 S100 calcium binding protein A9 -0.032807
RPS23 ribosomal protein S23 -0.0321588
RPL11 ribosomal protein L11 -0.032024
RPS16 ribosomal protein S16 -0.0315624
RPL5 ribosomal protein L5 -0.0312821
FAM162A family with sequence similarity 162, member A -0.0308816
RPL26 ribosomal protein L26 -0.0299252
MKLN1 muskelin 1, intracellular mediator containing kelch motifs -0.0293338
RPL36A ribosomal protein L36a -0.0292542
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0291593
CALM2 calmodulin 2 (phosphorylase kinase, delta) -0.0284797
LDHA lactate dehydrogenase A -0.0277408
PDIA3 protein disulfide isomerase family A, member 3 -0.0275596
S100A10 S100 calcium binding protein A10 -0.0272531
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0270925
ARID4B AT rich interactive domain 4B (RBP1-like) -0.0269965
NAMPT nicotinamide phosphoribosyltransferase -0.0268417
RPS20 ribosomal protein S20 -0.0263024
GNAS GNAS complex locus -0.0260452
LCORL ligand dependent nuclear receptor corepressor-like -0.0251302
NAA15 N(alpha)-acetyltransferase 15, NatA auxiliary subunit -0.0247377
RACK1 receptor for activated C kinase 1 -0.0242249
RPL30 ribosomal protein L30 -0.0240465
LOC112694756 uncharaterized LOC112694756 -0.0236788
HMGA1 high mobility group AT-hook 1 -0.0227805
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa -0.022563
NOP58 NOP58 ribonucleoprotein -0.0225546
RTN3 reticulon 3 -0.0224267
TCF12 transcription factor 12 -0.0223121
ATP1B3 ATPase, Na+/K+ transporting, beta 3 polypeptide -0.0222904
ZNF207 zinc finger protein 207 -0.0222452
RPL28 ribosomal protein L28 -0.0219395
RPS29 ribosomal protein S29 -0.0218425
HP1BP3 heterochromatin protein 1, binding protein 3 -0.0217851
DSTN destrin (actin depolymerizing factor) -0.0217245
SERPINB1 serpin peptidase inhibitor, clade B (ovalbumin), member 1 -0.0214221
ATF4 activating transcription factor 4 -0.0213392
TXNRD1 thioredoxin reductase 1 -0.0212733
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0212074
EIF1 eukaryotic translation initiation factor 1 -0.0211455
RPL7 ribosomal protein L7 -0.0210674
SLC25A5 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 -0.0209776
RPL17-C18ORF32 RPL17-C18orf32 readthrough -0.0208032
NT5C2 5'-nucleotidase, cytosolic II -0.0207479
EML4 echinoderm microtubule associated protein like 4 -0.0207219
MARCHF6 membrane associated ring-CH-type finger 6 -0.0206341
TNRC6B trinucleotide repeat containing 6B -0.0203515
RPS5 ribosomal protein S5 -0.0203497
RSL1D1 ribosomal L1 domain containing 1 -0.0200848
RPS28 ribosomal protein S28 -0.0199518
USP34 ubiquitin specific peptidase 34 -0.0199168
RLF rearranged L-myc fusion -0.0199052
HMGB1 high mobility group box 1 -0.0198736
FTL ferritin, light polypeptide -0.0196588
RHOA ras homolog family member A -0.0196148
TMSB10 thymosin beta 10 -0.0195076
IARS1 isoleucyl-tRNA synthetase 1 -0.019495
GNL3 guanine nucleotide binding protein-like 3 (nucleolar) -0.0194608
ITFG1 integrin alpha FG-GAP repeat containing 1 -0.0193824