Dexamethasone_NCI-H23 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Dexamethasone perturbation in NCI-H23 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Dexamethasone_NCI-H23 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
AKAP12 A kinase (PRKA) anchor protein 12 0.288021
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.137361
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0958111
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0922123
ERRFI1 ERBB receptor feedback inhibitor 1 0.0785347
TXNRD1 thioredoxin reductase 1 0.0779968
TFPI2 tissue factor pathway inhibitor 2 0.0670747
MT2A metallothionein 2A 0.0621252
KPNA4 karyopherin alpha 4 (importin alpha 3) 0.0575025
RTN4 reticulon 4 0.0479186
ELL2 elongation factor, RNA polymerase II, 2 0.0477828
YBX3 Y box binding protein 3 0.0420521
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0419683
ATP1B3 ATPase, Na+/K+ transporting, beta 3 polypeptide 0.0395706
RPS8 ribosomal protein S8 0.0380069
ENO1 enolase 1, (alpha) 0.0378207
RPS3 ribosomal protein S3 0.0361483
RPS6 ribosomal protein S6 0.0352927
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.034145
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0315401
NAP1L1 nucleosome assembly protein 1-like 1 0.0315143
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0308796
VIM vimentin 0.0300352
RPL12 ribosomal protein L12 0.0296396
NIPBL Nipped-B homolog (Drosophila) 0.0295433
IPO7 importin 7 0.0288786
RPS12 ribosomal protein S12 0.0287455
TPM3 tropomyosin 3 0.0280649
RUSC2 RUN and SH3 domain containing 2 0.0256791
YBX1 Y box binding protein 1 0.0254477
LDHB lactate dehydrogenase B 0.0253675
SMC4 structural maintenance of chromosomes 4 0.0247767
XPOT exportin, tRNA 0.0244294
PDE4D phosphodiesterase 4D, cAMP-specific 0.0243768
MKI67 marker of proliferation Ki-67 0.0243721
RPL35A ribosomal protein L35a 0.0241898
PGK1 phosphoglycerate kinase 1 0.0241753
PTPRN2 protein tyrosine phosphatase, receptor type, N polypeptide 2 0.0237076
KTN1 kinectin 1 (kinesin receptor) 0.0234538
CSNK1A1 casein kinase 1, alpha 1 0.0233857
PA2G4 proliferation-associated 2G4, 38kDa 0.022952
RPS19 ribosomal protein S19 0.0226399
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0222676
PTGES3 prostaglandin E synthase 3 (cytosolic) 0.0218015
CHD1 chromodomain helicase DNA binding protein 1 0.0215454
MIS18BP1 MIS18 binding protein 1 0.0215051
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0211282
ADAM17 ADAM metallopeptidase domain 17 0.0206662
PPME1 protein phosphatase methylesterase 1 0.0203565
RPL5 ribosomal protein L5 0.0202972
RPLP1 ribosomal protein, large, P1 0.0200954
POTEF POTE ankyrin domain family, member F 0.0192797
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 0.0188807
RPL26 ribosomal protein L26 0.0184239
EIF2S2 eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa 0.0183815
AP1S3 adaptor-related protein complex 1, sigma 3 subunit 0.018334
TMEM41B transmembrane protein 41B 0.018258
BIRC2 baculoviral IAP repeat containing 2 0.0181931
RPL8 ribosomal protein L8 0.0179903
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.0179869
EEF2 eukaryotic translation elongation factor 2 0.0178283
MYPN myopalladin 0.017787
ESYT2 extended synaptotagmin-like protein 2 0.0175331
RPS27 ribosomal protein S27 0.0174609
PHLDA1 pleckstrin homology-like domain, family A, member 1 0.0172481
RPS15 ribosomal protein S15 0.0171419
RPL37A ribosomal protein L37a 0.0171034
PFDN2 prefoldin subunit 2 0.0166045
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 0.0162397
CCL20 chemokine (C-C motif) ligand 20 0.0161999
EIF5B eukaryotic translation initiation factor 5B 0.0161022
EIF1 eukaryotic translation initiation factor 1 0.0159706
DOCK5 dedicator of cytokinesis 5 0.0159021
SET SET nuclear proto-oncogene 0.0157299
RPLP2 ribosomal protein, large, P2 0.0157298
AGFG1 ArfGAP with FG repeats 1 0.0156187
HIPK1 homeodomain interacting protein kinase 1 0.0155588
KIF5B kinesin family member 5B 0.0155153
RPL27 ribosomal protein L27 0.0150341
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0148759
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) 0.0146341
ARL13B ADP-ribosylation factor-like 13B 0.0145428
CAPZA1 capping protein (actin filament) muscle Z-line, alpha 1 0.0144278
RPS4X ribosomal protein S4, X-linked 0.0142894
RPL9 ribosomal protein L9 0.0142745
SLC38A2 solute carrier family 38, member 2 0.0142644
KPNB1 karyopherin (importin) beta 1 0.0142301
ACTG1 actin gamma 1 0.0140141
CCT4 chaperonin containing TCP1, subunit 4 (delta) 0.0140062
NSD2 nuclear receptor binding SET domain protein 2 0.0139391
RPL37 ribosomal protein L37 0.0138848
DDX50 DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 0.0137293
ATAD2 ATPase family, AAA domain containing 2 0.0137259
DDX18 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 0.013661
RPL17-C18ORF32 RPL17-C18orf32 readthrough 0.0136342
BZW2 basic leucine zipper and W2 domains 2 0.0136333
ROCK2 Rho-associated, coiled-coil containing protein kinase 2 0.0135257
TPI1 triosephosphate isomerase 1 0.0134836
TIPARP TCDD-inducible poly(ADP-ribose) polymerase 0.0134821
EIF4A2 eukaryotic translation initiation factor 4A2 0.0134473

decreased expression

Symbol Name Standardized Value
THSD4 thrombospondin, type I, domain containing 4 -0.0993363
RAD51B RAD51 paralog B -0.0813141
AFF3 AF4/FMR2 family, member 3 -0.0694874
SMAD3 SMAD family member 3 -0.0688295
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.068436
STAT1 signal transducer and activator of transcription 1, 91kDa -0.0673083
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0657263
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 -0.0625566
EXOC4 exocyst complex component 4 -0.0593489
TAS2R14 taste receptor, type 2, member 14 -0.0576468
ERC1 ELKS/RAB6-interacting/CAST family member 1 -0.0537902
ATXN1 ataxin 1 -0.0502175
FNDC3B fibronectin type III domain containing 3B -0.049756
PARP14 poly (ADP-ribose) polymerase family, member 14 -0.049174
ADAR adenosine deaminase, RNA-specific -0.0490266
TRIO trio Rho guanine nucleotide exchange factor -0.047667
UBE2H ubiquitin-conjugating enzyme E2H -0.045917
SHANK2 SH3 and multiple ankyrin repeat domains 2 -0.0457135
NCOA7 nuclear receptor coactivator 7 -0.0455418
RNF213 ring finger protein 213 -0.0452748
VCL vinculin -0.0444748
RIMS2 regulating synaptic membrane exocytosis 2 -0.043931
PNPT1 polyribonucleotide nucleotidyltransferase 1 -0.0436081
OSMR oncostatin M receptor -0.0435817
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.0416051
NF1 neurofibromin 1 -0.0408172
ZFAND3 zinc finger, AN1-type domain 3 -0.0406211
FMNL2 formin-like 2 -0.0403849
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 -0.0400462
AHNAK AHNAK nucleoprotein -0.0400192
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 -0.0392842
EML4 echinoderm microtubule associated protein like 4 -0.0376854
EXT1 exostosin glycosyltransferase 1 -0.0374867
IGF1R insulin-like growth factor 1 receptor -0.0370732
PHLDB2 pleckstrin homology-like domain, family B, member 2 -0.0366314
MACF1 microtubule-actin crosslinking factor 1 -0.0361218
EGFR epidermal growth factor receptor -0.0359798
SMYD3 SET and MYND domain containing 3 -0.0356884
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0356139
PYGL phosphorylase, glycogen, liver -0.0353346
RIGI RNA sensor RIG-I -0.0351856
CDK17 cyclin-dependent kinase 17 -0.0351505
KDM2A lysine (K)-specific demethylase 2A -0.0348533
PRKCE protein kinase C, epsilon -0.0344144
NABP1 nucleic acid binding protein 1 -0.0343572
ETV6 ets variant 6 -0.0343112
EHBP1 EH domain binding protein 1 -0.0341806
ZNFX1 zinc finger, NFX1-type containing 1 -0.0333626
PPP6R3 protein phosphatase 6, regulatory subunit 3 -0.0332394
DCUN1D4 DCN1, defective in cullin neddylation 1, domain containing 4 -0.0332136
PRH1 proline-rich protein HaeIII subfamily 1 -0.0332016
RICTOR RPTOR independent companion of MTOR, complex 2 -0.0331546
ZCCHC7 zinc finger, CCHC domain containing 7 -0.032579
RYR3 ryanodine receptor 3 -0.0324384
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0321436
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) -0.0315963
CUX1 cut-like homeobox 1 -0.0315406
PTK2 protein tyrosine kinase 2 -0.0314481
APP amyloid beta (A4) precursor protein -0.0310508
ACTN1 actinin, alpha 1 -0.0309701
ZBTB20 zinc finger and BTB domain containing 20 -0.0307579
ATG7 autophagy related 7 -0.0307045
RERE arginine-glutamic acid dipeptide (RE) repeats -0.0305962
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0305787
CDKAL1 CDK5 regulatory subunit associated protein 1-like 1 -0.0303564
CACNA2D1 calcium channel, voltage-dependent, alpha 2/delta subunit 1 -0.0297592
HMGA2 high mobility group AT-hook 2 -0.0294821
AEBP2 AE binding protein 2 -0.0290847
DENND5B DENN/MADD domain containing 5B -0.0285085
NHS Nance-Horan syndrome (congenital cataracts and dental anomalies) -0.0283674
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0281815
FBXO11 F-box protein 11 -0.0280772
NTSR1 neurotensin receptor 1 (high affinity) -0.0280535
RAB7A RAB7A, member RAS oncogene family -0.0279278
ARB2A ARB2 cotranscriptional regulator A -0.027778
PLSCR1 phospholipid scramblase 1 -0.027737
BBX bobby sox homolog (Drosophila) -0.0277111
ZMYND8 zinc finger, MYND-type containing 8 -0.027457
FAF1 Fas (TNFRSF6) associated factor 1 -0.027325
THOC2 THO complex 2 -0.0272628
BABAM2 BRISC and BRCA1 A complex member 2 -0.0271363
NBEAL1 neurobeachin-like 1 -0.0265835
PRRC2B proline-rich coiled-coil 2B -0.0264858
TRIP12 thyroid hormone receptor interactor 12 -0.0262721
NCOR1 nuclear receptor corepressor 1 -0.0259876
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 -0.0259659
YAP1 Yes-associated protein 1 -0.0256081
BCAS3 breast carcinoma amplified sequence 3 -0.0254208
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 -0.0252691
PHF21A PHD finger protein 21A -0.0252026
ICAM1 intercellular adhesion molecule 1 -0.0251345
CALD1 caldesmon 1 -0.0250723
PMP22 peripheral myelin protein 22 -0.0250391
GPATCH2L G patch domain containing 2-like -0.0249886
CDK13 cyclin-dependent kinase 13 -0.024878
ST3GAL3 ST3 beta-galactoside alpha-2,3-sialyltransferase 3 -0.0247247
SAMD4A sterile alpha motif domain containing 4A -0.024686
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 -0.0245341
MTA3 metastasis associated 1 family, member 3 -0.0244799
IFIH1 interferon induced with helicase C domain 1 -0.0244571