Dimethyl fumarate_A-427 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Dimethyl fumarate perturbation in A-427 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Dimethyl fumarate_A-427 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
PDE4D phosphodiesterase 4D, cAMP-specific 0.106137
TENM3 teneurin transmembrane protein 3 0.0521376
YAP1 Yes-associated protein 1 0.0505162
MMP12 matrix metallopeptidase 12 0.0441479
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0435998
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 0.0430868
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0419137
NLGN1 neuroligin 1 0.0410734
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) 0.0395729
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0378924
PDGFC platelet derived growth factor C 0.0371448
ERRFI1 ERBB receptor feedback inhibitor 1 0.037087
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0361166
DST dystonin 0.0352916
CELF2 CUGBP, Elav-like family member 2 0.0331292
ADGRG6 adhesion G protein-coupled receptor G6 0.0318018
TMEM41B transmembrane protein 41B 0.0312826
NEK7 NIMA-related kinase 7 0.0307419
HSPA8 heat shock 70kDa protein 8 0.0292044
EGLN1 egl-9 family hypoxia-inducible factor 1 0.0288794
SMYD3 SET and MYND domain containing 3 0.0284256
ATP11A ATPase, class VI, type 11A 0.0283294
BIRC2 baculoviral IAP repeat containing 2 0.0277462
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0273162
TNPO1 transportin 1 0.0271962
WWOX WW domain containing oxidoreductase 0.0271018
KIF5B kinesin family member 5B 0.026872
TXNRD1 thioredoxin reductase 1 0.0259904
RRM2 ribonucleotide reductase M2 0.0254021
XPO1 exportin 1 0.024865
GASK1B golgi associated kinase 1B 0.0247714
MTAP methylthioadenosine phosphorylase 0.0245867
EPHA6 EPH receptor A6 0.0243864
AXIN2 axin 2 0.0242694
ZBTB20 zinc finger and BTB domain containing 20 0.0241554
CXADR coxsackie virus and adenovirus receptor 0.0239061
EXOC6B exocyst complex component 6B 0.0236163
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0233164
EIF4B eukaryotic translation initiation factor 4B 0.0231026
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0228395
SMC4 structural maintenance of chromosomes 4 0.0227314
STARD4 StAR-related lipid transfer (START) domain containing 4 0.0224505
MPG N-methylpurine-DNA glycosylase 0.0214911
TAS2R14 taste receptor, type 2, member 14 0.0213477
H1-0 H1.0 linker histone 0.0207687
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa 0.0206102
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0205815
MGAT4C MGAT4 family, member C 0.0205352
EDARADD EDAR-associated death domain 0.0204742
MKI67 marker of proliferation Ki-67 0.0203248
PDE4B phosphodiesterase 4B, cAMP-specific 0.0202393
EIF3A eukaryotic translation initiation factor 3, subunit A 0.0201299
PGK1 phosphoglycerate kinase 1 0.0199309
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0195548
LOC112694756 uncharaterized LOC112694756 0.0193688
MED13L mediator complex subunit 13-like 0.0190933
ZNF217 zinc finger protein 217 0.0190354
USP34 ubiquitin specific peptidase 34 0.0189922
PUM2 pumilio RNA-binding family member 2 0.0188727
RTN4 reticulon 4 0.0188347
IPO7 importin 7 0.0187215
SLC38A2 solute carrier family 38, member 2 0.0187092
VMP1 vacuole membrane protein 1 0.0185784
YBX3 Y box binding protein 3 0.0185409
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 0.0182255
PRRC2A proline-rich coiled-coil 2A 0.018115
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0180845
TRA2B transformer 2 beta homolog (Drosophila) 0.0180234
SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 0.0179654
ENO1 enolase 1, (alpha) 0.0175815
WDPCP WD repeat containing planar cell polarity effector 0.0175801
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 0.0175566
YEATS2 YEATS domain containing 2 0.0175266
EIF4A2 eukaryotic translation initiation factor 4A2 0.0175172
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0174293
CEP192 centrosomal protein 192kDa 0.0173954
LMO7 LIM domain 7 0.0173349
CEP95 centrosomal protein 95kDa 0.017065
KDM3A lysine (K)-specific demethylase 3A 0.0169351
KIAA1328 KIAA1328 0.0167452
CCSER1 coiled-coil serine-rich protein 1 0.0167043
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 0.0165305
EEF2 eukaryotic translation elongation factor 2 0.0164405
NCAPD2 non-SMC condensin I complex, subunit D2 0.0161947
ERBB4 erb-b2 receptor tyrosine kinase 4 0.0161074
OGA O-GlcNAcase 0.015817
CPOX coproporphyrinogen oxidase 0.015785
ANKRD12 ankyrin repeat domain 12 0.0156715
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0155889
CRISPLD1 cysteine-rich secretory protein LCCL domain containing 1 0.0155477
CENPF centromere protein F, 350/400kDa 0.0153233
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0152035
NUP153 nucleoporin 153kDa 0.0151937
CHD1 chromodomain helicase DNA binding protein 1 0.015143
LDHA lactate dehydrogenase A 0.0149453
LRRTM4 leucine rich repeat transmembrane neuronal 4 0.0149136
KPNA4 karyopherin alpha 4 (importin alpha 3) 0.0148207
PRKDC protein kinase, DNA-activated, catalytic polypeptide 0.0147972
VCL vinculin 0.0147224
PCDH7 protocadherin 7 0.0146023

decreased expression

Symbol Name Standardized Value
PTMA prothymosin, alpha -0.0563563
AREG amphiregulin -0.0430707
VIM vimentin -0.0350805
TMSB10 thymosin beta 10 -0.030659
RPL35A ribosomal protein L35a -0.0271916
INTS6 integrator complex subunit 6 -0.0247984
HMGA2 high mobility group AT-hook 2 -0.0244135
FTL ferritin, light polypeptide -0.0240207
EHBP1 EH domain binding protein 1 -0.023014
HSPB1 heat shock 27kDa protein 1 -0.0225377
RPS27A ribosomal protein S27a -0.02202
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.02194
RPS8 ribosomal protein S8 -0.0204267
RPS23 ribosomal protein S23 -0.0202644
EGR1 early growth response 1 -0.0193191
RPS3 ribosomal protein S3 -0.0188566
RPS29 ribosomal protein S29 -0.0186168
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0177916
RPS13 ribosomal protein S13 -0.0176467
RPL37A ribosomal protein L37a -0.0175878
RAB7A RAB7A, member RAS oncogene family -0.0172031
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 -0.0168372
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 -0.016837
S100A6 S100 calcium binding protein A6 -0.0165589
CALR calreticulin -0.016411
IFIH1 interferon induced with helicase C domain 1 -0.0163631
TUBA1B tubulin, alpha 1b -0.0159444
AKAP12 A kinase (PRKA) anchor protein 12 -0.0159247
LOC102724023 ES1 protein homolog, mitochondrial -0.0159112
S100A11 S100 calcium binding protein A11 -0.0158347
RPL31 ribosomal protein L31 -0.0153876
S100A10 S100 calcium binding protein A10 -0.0145323
HMGA1 high mobility group AT-hook 1 -0.0142383
TPT1 tumor protein, translationally-controlled 1 -0.013742
RPS14 ribosomal protein S14 -0.0135101
LRRC23 leucine rich repeat containing 23 -0.0134633
TPM4 tropomyosin 4 -0.0128879
RPS25 ribosomal protein S25 -0.0127903
RPS24 ribosomal protein S24 -0.0126992
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.0126159
NAP1L1 nucleosome assembly protein 1-like 1 -0.0125194
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0125114
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 -0.0117838
RPL34 ribosomal protein L34 -0.0117409
TOMM20 translocase of outer mitochondrial membrane 20 homolog (yeast) -0.0116483
RPS27 ribosomal protein S27 -0.0115898
CUX1 cut-like homeobox 1 -0.011496
TBCA tubulin folding cofactor A -0.0114189
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0111216
DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1 -0.0110362
RPL9 ribosomal protein L9 -0.0109845
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0109367
RPS6 ribosomal protein S6 -0.0108992
RPLP2 ribosomal protein, large, P2 -0.0108766
RPS11 ribosomal protein S11 -0.0107695
GCG glucagon -0.0104999
CALM1 calmodulin 1 (phosphorylase kinase, delta) -0.0102566
ZCCHC7 zinc finger, CCHC domain containing 7 -0.0101048
SLC38A1 solute carrier family 38, member 1 -0.0100659
HSPH1 heat shock 105kDa/110kDa protein 1 -0.0100123
NAV3 neuron navigator 3 -0.00983031
DKK1 dickkopf WNT signaling pathway inhibitor 1 -0.00965783
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta -0.0095969
RPS10 ribosomal protein S10 -0.00958021
HLA-B major histocompatibility complex, class I, B -0.00954218
MAP1LC3B microtubule-associated protein 1 light chain 3 beta -0.00947123
TM4SF1 transmembrane 4 L six family member 1 -0.00946989
TIMP2 TIMP metallopeptidase inhibitor 2 -0.00929403
DDIT3 DNA-damage-inducible transcript 3 -0.00917945
CSMD3 CUB and Sushi multiple domains 3 -0.00901263
BRI3BP BRI3 binding protein -0.00894804
HLA-A major histocompatibility complex, class I, A -0.00885628
RPL36A ribosomal protein L36a -0.0088528
CCT4 chaperonin containing TCP1, subunit 4 (delta) -0.00884158
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.00873981
RPS15 ribosomal protein S15 -0.00870999
RPS12 ribosomal protein S12 -0.00860672
GNAS GNAS complex locus -0.00859472
MYADM myeloid-associated differentiation marker -0.00844308
FAM162A family with sequence similarity 162, member A -0.00835806
PCF11 PCF11 cleavage and polyadenylation factor subunit -0.00826231
S100A9 S100 calcium binding protein A9 -0.0081709
RPL23 ribosomal protein L23 -0.00810621
LDHB lactate dehydrogenase B -0.00810401
MACF1 microtubule-actin crosslinking factor 1 -0.00800855
RPL10A ribosomal protein L10a -0.00800639
CNRIP1 cannabinoid receptor interacting protein 1 -0.00797507
SERPINB2 serpin peptidase inhibitor, clade B (ovalbumin), member 2 -0.00795938
DIP2B DIP2 disco-interacting protein 2 homolog B (Drosophila) -0.00795765
SYT1 synaptotagmin I -0.00792571
IFITM3 interferon induced transmembrane protein 3 -0.00789208
CLDN1 claudin 1 -0.00777305
EGFR epidermal growth factor receptor -0.00771121
CAP1 CAP, adenylate cyclase-associated protein 1 (yeast) -0.00768671
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 -0.00767191
GJA1 gap junction protein, alpha 1, 43kDa -0.00761373
SERBP1 SERPINE1 mRNA binding protein 1 -0.00760737
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.00757779
SPDYA speedy/RINGO cell cycle regulator family member A -0.00755748
RASAL2 RAS protein activator like 2 -0.00752663