Dimethyl fumarate_A498 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Dimethyl fumarate perturbation in A498 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Dimethyl fumarate_A498 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
MYH9 myosin, heavy chain 9, non-muscle 0.0988784
CXCL8 chemokine (C-X-C motif) ligand 8 0.0883679
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.0881451
EXT1 exostosin glycosyltransferase 1 0.0879102
FNDC3B fibronectin type III domain containing 3B 0.0841448
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 0.0679982
TRIO trio Rho guanine nucleotide exchange factor 0.0647973
GPC6 glypican 6 0.0645214
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0637689
GLS2 glutaminase 2 (liver, mitochondrial) 0.0633268
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0597035
SMAD3 SMAD family member 3 0.0528907
PALM2AKAP2 PALM2 and AKAP2 fusion 0.0504261
NRIP1 nuclear receptor interacting protein 1 0.0504234
ZFAND3 zinc finger, AN1-type domain 3 0.0462949
FAT1 FAT atypical cadherin 1 0.045688
NAV2 neuron navigator 2 0.0449336
ATP13A3 ATPase type 13A3 0.044727
COG5 component of oligomeric golgi complex 5 0.0433076
PPP1R15B protein phosphatase 1, regulatory subunit 15B 0.0426679
FLNA filamin A, alpha 0.0423855
ANKRD17 ankyrin repeat domain 17 0.0422053
MSN moesin 0.0421595
RUNX1 runt-related transcription factor 1 0.0415782
NRP2 neuropilin 2 0.0410551
FTH1 ferritin, heavy polypeptide 1 0.0409801
SBF2 SET binding factor 2 0.0408783
ZCCHC7 zinc finger, CCHC domain containing 7 0.0402367
SEPTIN9 septin 9 0.0399534
PSME4 proteasome (prosome, macropain) activator subunit 4 0.0398039
WDR43 WD repeat domain 43 0.0395416
RPS2 ribosomal protein S2 0.0389706
TGFB2 transforming growth factor, beta 2 0.0387381
SHB Src homology 2 domain containing adaptor protein B 0.0386952
CSF1 colony stimulating factor 1 (macrophage) 0.0379213
ICAM1 intercellular adhesion molecule 1 0.0377221
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 0.0374747
AP2B1 adaptor-related protein complex 2, beta 1 subunit 0.0369531
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 0.0367182
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.036582
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0363524
SUCO SUN domain containing ossification factor 0.0351959
ANKRD11 ankyrin repeat domain 11 0.034958
KMT2C lysine (K)-specific methyltransferase 2C 0.0347555
VCAM1 vascular cell adhesion molecule 1 0.0345628
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa 0.0345106
CALU calumenin 0.0341389
TNS3 tensin 3 0.0327814
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.0325615
CADM1 cell adhesion molecule 1 0.0324871
DNAJB6 DnaJ (Hsp40) homolog, subfamily B, member 6 0.0324429
MBD5 methyl-CpG binding domain protein 5 0.0315975
PTK2 protein tyrosine kinase 2 0.0314372
TGFBI transforming growth factor, beta-induced, 68kDa 0.0310313
GLIS3 GLIS family zinc finger 3 0.0308923
TNFRSF10B tumor necrosis factor receptor superfamily, member 10b 0.0300167
SP3 Sp3 transcription factor 0.0299354
DOCK5 dedicator of cytokinesis 5 0.0297811
TPM3 tropomyosin 3 0.029715
BIRC6 baculoviral IAP repeat containing 6 0.0296976
PBX1 pre-B-cell leukemia homeobox 1 0.0294168
EEF2 eukaryotic translation elongation factor 2 0.029337
GOLGA4 golgin A4 0.0292577
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 0.0291562
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.0286899
P3H2 prolyl 3-hydroxylase 2 0.0286666
AKAP9 A kinase (PRKA) anchor protein 9 0.0286293
YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta 0.028452
VPS13B vacuolar protein sorting 13 homolog B (yeast) 0.028327
STOM stomatin 0.0281363
RNF216 ring finger protein 216 0.0275388
ARHGAP26 Rho GTPase activating protein 26 0.0274419
ZFC3H1 zinc finger, C3H1-type containing 0.0272857
LENG8 leukocyte receptor cluster (LRC) member 8 0.0271888
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.0271602
HERC1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 0.0269563
SLTM SAFB-like, transcription modulator 0.0269561
UBE2H ubiquitin-conjugating enzyme E2H 0.0266764
RB1CC1 RB1-inducible coiled-coil 1 0.0265207
CMIP c-Maf inducing protein 0.0264038
APP amyloid beta (A4) precursor protein 0.0263146
CHD1 chromodomain helicase DNA binding protein 1 0.0260535
CENPF centromere protein F, 350/400kDa 0.0260246
NBAS neuroblastoma amplified sequence 0.0257007
SPAG9 sperm associated antigen 9 0.0249848
ETV6 ets variant 6 0.0247395
CPAP centrosome assembly and centriole elongation protein 0.0247285
COTL1 coactosin-like F-actin binding protein 1 0.0245589
EML4 echinoderm microtubule associated protein like 4 0.0245421
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 0.0243957
TTC3 tetratricopeptide repeat domain 3 0.0242204
SOD2 superoxide dismutase 2, mitochondrial 0.0242185
VMP1 vacuole membrane protein 1 0.0241401
BHLHE40 basic helix-loop-helix family, member e40 0.0239854
PAX8 paired box 8 0.0239775
CRY1 cryptochrome circadian clock 1 0.0239259
CDK13 cyclin-dependent kinase 13 0.0235065
HELZ helicase with zinc finger 0.0233525
NUFIP2 nuclear fragile X mental retardation protein interacting protein 2 0.0232816
RIC1 RAB6A GEF complex partner 1 0.0231193

decreased expression

Symbol Name Standardized Value
IGFBP3 insulin-like growth factor binding protein 3 -0.21809
TMSB10 thymosin beta 10 -0.168561
FTL ferritin, light polypeptide -0.167537
FRMD4A FERM domain containing 4A -0.151294
VIM vimentin -0.0939044
CP ceruloplasmin (ferroxidase) -0.0913505
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0862413
B2M beta-2-microglobulin -0.078057
HLA-B major histocompatibility complex, class I, B -0.054248
MT2A metallothionein 2A -0.0526746
NDRG1 N-myc downstream regulated 1 -0.0503839
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0494874
TXNRD1 thioredoxin reductase 1 -0.0459075
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0457796
RPL35A ribosomal protein L35a -0.0452852
CALR calreticulin -0.0450678
APOL1 apolipoprotein L, 1 -0.0441794
HSPB1 heat shock 27kDa protein 1 -0.0439251
RIGI RNA sensor RIG-I -0.0428341
PTMA prothymosin, alpha -0.0412177
RPLP1 ribosomal protein, large, P1 -0.0404278
ASPH aspartate beta-hydroxylase -0.0396212
SPARC secreted protein, acidic, cysteine-rich (osteonectin) -0.0360385
IFITM3 interferon induced transmembrane protein 3 -0.0353286
IFI16 interferon, gamma-inducible protein 16 -0.0343667
PARP14 poly (ADP-ribose) polymerase family, member 14 -0.0340106
CA12 carbonic anhydrase XII -0.0338492
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 -0.0333305
PLIN2 perilipin 2 -0.033238
RRBP1 ribosome binding protein 1 -0.0324936
S100A11 S100 calcium binding protein A11 -0.0321776
RPS24 ribosomal protein S24 -0.032057
RPL34 ribosomal protein L34 -0.0314051
IFI6 interferon, alpha-inducible protein 6 -0.0313425
ARL4C ADP-ribosylation factor-like 4C -0.0309138
RPL31 ribosomal protein L31 -0.0306468
TFPI2 tissue factor pathway inhibitor 2 -0.0302789
CTSD cathepsin D -0.0296427
IFIH1 interferon induced with helicase C domain 1 -0.0295782
RPL23 ribosomal protein L23 -0.0294339
EIF1 eukaryotic translation initiation factor 1 -0.0283443
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0281579
IFIT2 interferon-induced protein with tetratricopeptide repeats 2 -0.0274846
CKAP4 cytoskeleton-associated protein 4 -0.0272418
SP100 SP100 nuclear antigen -0.0272168
IFI44L interferon-induced protein 44-like -0.0269371
RPS19 ribosomal protein S19 -0.0264035
HLA-A major histocompatibility complex, class I, A -0.0255909
TKT transketolase -0.0254632
RPL19 ribosomal protein L19 -0.0250809
MMP7 matrix metallopeptidase 7 -0.0248737
HLA-E major histocompatibility complex, class I, E -0.0247426
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 -0.024692
P4HA2 prolyl 4-hydroxylase, alpha polypeptide II -0.0238969
CD63 CD63 molecule -0.0237269
LMNA lamin A/C -0.0233819
S100A6 S100 calcium binding protein A6 -0.0232347
PDIA4 protein disulfide isomerase family A, member 4 -0.0232319
HLA-C major histocompatibility complex, class I, C -0.0231386
S100A10 S100 calcium binding protein A10 -0.0224963
IFI27 interferon, alpha-inducible protein 27 -0.0224168
PPIB peptidylprolyl isomerase B (cyclophilin B) -0.0222455
RPS23 ribosomal protein S23 -0.0218675
RNF213 ring finger protein 213 -0.0216547
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.021151
LOC102724023 ES1 protein homolog, mitochondrial -0.020951
TRIM56 tripartite motif containing 56 -0.0206506
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0206437
CCND1 cyclin D1 -0.0196942
ZMYND8 zinc finger, MYND-type containing 8 -0.0196368
LY6E lymphocyte antigen 6 complex, locus E -0.0192264
RPL36 ribosomal protein L36 -0.0192029
XAF1 XIAP associated factor 1 -0.0189749
RPL12 ribosomal protein L12 -0.0188925
TPT1 tumor protein, translationally-controlled 1 -0.0187505
PRKCA protein kinase C, alpha -0.0187428
HSPH1 heat shock 105kDa/110kDa protein 1 -0.0185861
MARCKS myristoylated alanine-rich protein kinase C substrate -0.0185514
SAMD9 sterile alpha motif domain containing 9 -0.0184987
ZBTB20 zinc finger and BTB domain containing 20 -0.0183698
RPS21 ribosomal protein S21 -0.0182565
LGALS1 lectin, galactoside-binding, soluble, 1 -0.0181264
PKM pyruvate kinase, muscle -0.0180885
JUN jun proto-oncogene -0.0178211
DEGS1 delta(4)-desaturase, sphingolipid 1 -0.017816
OXR1 oxidation resistance 1 -0.0176667
LAP3 leucine aminopeptidase 3 -0.0176137
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa -0.0175929
KPNB1 karyopherin (importin) beta 1 -0.0174986
DIAPH2 diaphanous-related formin 2 -0.0174414
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 -0.0174128
IFITM1 interferon induced transmembrane protein 1 -0.0173391
TUBA1B tubulin, alpha 1b -0.0173196
EHBP1 EH domain binding protein 1 -0.0169202
RPS13 ribosomal protein S13 -0.0168615
RPS5 ribosomal protein S5 -0.0168475
S100A9 S100 calcium binding protein A9 -0.0167596
ANXA4 annexin A4 -0.0165893
SLC16A3 solute carrier family 16 (monocarboxylate transporter), member 3 -0.0165249
RPL38 ribosomal protein L38 -0.0164018