Dimethyl fumarate_CFPAC-1 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Dimethyl fumarate perturbation in CFPAC-1 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Dimethyl fumarate_CFPAC-1 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
NDRG1 N-myc downstream regulated 1 0.148033
SMAD3 SMAD family member 3 0.135463
SAMD4A sterile alpha motif domain containing 4A 0.108701
FNDC3B fibronectin type III domain containing 3B 0.104022
TGM2 transglutaminase 2 0.0837887
APLP2 amyloid beta (A4) precursor-like protein 2 0.0831523
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0718422
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.0696864
LOC112694756 uncharaterized LOC112694756 0.0695483
MCL1 myeloid cell leukemia 1 0.0669059
FHIP1A FHF complex subunit HOOK interacting protein 1A 0.0657864
MYH9 myosin, heavy chain 9, non-muscle 0.0653867
APP amyloid beta (A4) precursor protein 0.0626264
BACE2 beta-site APP-cleaving enzyme 2 0.060944
PPARD peroxisome proliferator-activated receptor delta 0.0509162
PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 0.050288
FLNB filamin B, beta 0.0499726
MYO1E myosin IE 0.0484497
ASPH aspartate beta-hydroxylase 0.048196
DOCK5 dedicator of cytokinesis 5 0.046364
AGRN agrin 0.0459204
FLNA filamin A, alpha 0.0440959
TRIO trio Rho guanine nucleotide exchange factor 0.0429809
KANSL1 KAT8 regulatory NSL complex subunit 1 0.041908
PTPN14 protein tyrosine phosphatase, non-receptor type 14 0.0407797
DTNA dystrobrevin, alpha 0.0390346
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0389992
HSPG2 heparan sulfate proteoglycan 2 0.0384536
ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) 0.0384184
CLMN calmin (calponin-like, transmembrane) 0.0364625
WWTR1 WW domain containing transcription regulator 1 0.0362159
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0361861
PATJ PATJ crumbs cell polarity complex component 0.0356538
ACTG1 actin gamma 1 0.0348559
DSCAM Down syndrome cell adhesion molecule 0.0333638
MAML2 mastermind-like 2 (Drosophila) 0.0330652
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0314244
HPCAL1 hippocalcin-like 1 0.0311291
ERRFI1 ERBB receptor feedback inhibitor 1 0.0310823
RAD51B RAD51 paralog B 0.030934
AKAP13 A kinase (PRKA) anchor protein 13 0.0307213
MT2A metallothionein 2A 0.030682
ANO6 anoctamin 6 0.0305619
SLTM SAFB-like, transcription modulator 0.0305388
TMEM51 transmembrane protein 51 0.0295631
HSPA8 heat shock 70kDa protein 8 0.0294009
DUSP5 dual specificity phosphatase 5 0.0291883
YEATS2 YEATS domain containing 2 0.0291297
NOTCH2 notch 2 0.0290376
PLEC plectin 0.0287489
LPP LIM domain containing preferred translocation partner in lipoma 0.0286911
PFKP phosphofructokinase, platelet 0.0286185
CDCP1 CUB domain containing protein 1 0.0283419
BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 0.0282937
NCOR2 nuclear receptor corepressor 2 0.0282919
BRD2 bromodomain containing 2 0.0277043
LAMA4 laminin, alpha 4 0.0274477
PDZD8 PDZ domain containing 8 0.0273771
MACF1 microtubule-actin crosslinking factor 1 0.027265
LASP1 LIM and SH3 protein 1 0.0268615
BCL2L1 BCL2-like 1 0.0267904
ANXA11 annexin A11 0.026731
ARHGAP26 Rho GTPase activating protein 26 0.0265339
FNIP1 folliculin interacting protein 1 0.0263316
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0261005
SPAG9 sperm associated antigen 9 0.0260525
NIBAN2 niban apoptosis regulator 2 0.0259885
JUP junction plakoglobin 0.0259162
RERE arginine-glutamic acid dipeptide (RE) repeats 0.0255953
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0255384
LAMA5 laminin, alpha 5 0.0254398
ACTN1 actinin, alpha 1 0.0251938
SDC4 syndecan 4 0.0251592
DST dystonin 0.0250944
RAPGEF2 Rap guanine nucleotide exchange factor (GEF) 2 0.0250882
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0250169
RNF213 ring finger protein 213 0.0249226
SFPQ splicing factor proline/glutamine-rich 0.0248803
MYO5B myosin VB 0.0247201
PRPF38B pre-mRNA processing factor 38B 0.0246703
CMIP c-Maf inducing protein 0.024663
SNAPC1 small nuclear RNA activating complex, polypeptide 1, 43kDa 0.0244735
SEMA4B sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 0.0244053
SMYD3 SET and MYND domain containing 3 0.0242597
APOL1 apolipoprotein L, 1 0.0241673
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0241
GSK3B glycogen synthase kinase 3 beta 0.0240758
PRELID2 PRELI domain containing 2 0.0240551
SLC35F5 solute carrier family 35, member F5 0.0236132
GRB10 growth factor receptor-bound protein 10 0.0235114
KDM6A lysine (K)-specific demethylase 6A 0.0233434
MYOF myoferlin 0.0225549
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0223803
KIAA1217 KIAA1217 0.0223613
TMBIM6 transmembrane BAX inhibitor motif containing 6 0.0221725
ACTN4 actinin, alpha 4 0.0220581
RPL3 ribosomal protein L3 0.0219443
RBM47 RNA binding motif protein 47 0.0218461
FAM3C family with sequence similarity 3, member C 0.0217946
EGR1 early growth response 1 0.0216973

decreased expression

Symbol Name Standardized Value
PTMA prothymosin, alpha -0.181198
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.171047
MMP7 matrix metallopeptidase 7 -0.143583
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.128067
TMSB10 thymosin beta 10 -0.0943248
CP ceruloplasmin (ferroxidase) -0.0760153
WSB1 WD repeat and SOCS box containing 1 -0.0683196
S100A6 S100 calcium binding protein A6 -0.0681524
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0669467
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide -0.0646807
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0578827
EIF1 eukaryotic translation initiation factor 1 -0.0559569
TPT1 tumor protein, translationally-controlled 1 -0.0556435
B2M beta-2-microglobulin -0.0537133
FTL ferritin, light polypeptide -0.0535209
C15ORF48 chromosome 15 open reading frame 48 -0.0524595
H1-0 H1.0 linker histone -0.0506955
IFI27 interferon, alpha-inducible protein 27 -0.0484805
VIM vimentin -0.048475
RAB1A RAB1A, member RAS oncogene family -0.0469482
TSC22D2 TSC22 domain family, member 2 -0.0463515
IGFBP3 insulin-like growth factor binding protein 3 -0.0451424
LMO7 LIM domain 7 -0.0450978
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) -0.0436095
MT1X metallothionein 1X -0.040197
PDIA3 protein disulfide isomerase family A, member 3 -0.0386925
NAMPT nicotinamide phosphoribosyltransferase -0.0385665
GARS1 glycyl-tRNA synthetase 1 -0.0377379
IER3 immediate early response 3 -0.0375192
KDM5B lysine (K)-specific demethylase 5B -0.037041
F3 coagulation factor III (thromboplastin, tissue factor) -0.0363958
ITGA6 integrin, alpha 6 -0.0363153
TMSB4X thymosin beta 4, X-linked -0.0346301
RPS24 ribosomal protein S24 -0.0333668
SLC38A1 solute carrier family 38, member 1 -0.0329473
ISG15 ISG15 ubiquitin-like modifier -0.0318612
UBC ubiquitin C -0.0317226
USP3 ubiquitin specific peptidase 3 -0.0312479
AHNAK AHNAK nucleoprotein -0.0311613
GNAS GNAS complex locus -0.0310906
RPS8 ribosomal protein S8 -0.0309539
CALM2 calmodulin 2 (phosphorylase kinase, delta) -0.0308949
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.0301692
ANXA2 annexin A2 -0.0299859
LY6E lymphocyte antigen 6 complex, locus E -0.0295393
RPS6 ribosomal protein S6 -0.0293896
CSTB cystatin B (stefin B) -0.0291586
MARCKS myristoylated alanine-rich protein kinase C substrate -0.029084
RPL34 ribosomal protein L34 -0.0287818
EREG epiregulin -0.028448
S100A11 S100 calcium binding protein A11 -0.0283115
RPL35A ribosomal protein L35a -0.028302
PDIA6 protein disulfide isomerase family A, member 6 -0.0280324
TMEM123 transmembrane protein 123 -0.0278692
DSG2 desmoglein 2 -0.0272631
BCAT1 branched chain amino-acid transaminase 1, cytosolic -0.0270613
ZFP36L1 ZFP36 ring finger protein-like 1 -0.0268858
RBM39 RNA binding motif protein 39 -0.0264097
RPL23 ribosomal protein L23 -0.0263953
IRF2BP2 interferon regulatory factor 2 binding protein 2 -0.0263091
S100A10 S100 calcium binding protein A10 -0.0262477
IFI6 interferon, alpha-inducible protein 6 -0.0262379
MAP1LC3B microtubule-associated protein 1 light chain 3 beta -0.0259981
PRRC2C proline-rich coiled-coil 2C -0.0252828
RPLP1 ribosomal protein, large, P1 -0.0252756
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0250202
RIOK3 RIO kinase 3 -0.0248976
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0248445
FAM162A family with sequence similarity 162, member A -0.0246953
QKI QKI, KH domain containing, RNA binding -0.0246789
BZW1 basic leucine zipper and W2 domains 1 -0.0246479
FTH1 ferritin, heavy polypeptide 1 -0.0243582
SYNE2 spectrin repeat containing, nuclear envelope 2 -0.0237131
PARD3 par-3 family cell polarity regulator -0.0232424
S100P S100 calcium binding protein P -0.0229878
SH3KBP1 SH3-domain kinase binding protein 1 -0.0228455
EPCAM epithelial cell adhesion molecule -0.0228314
HILPDA hypoxia inducible lipid droplet-associated -0.0226908
IFI16 interferon, gamma-inducible protein 16 -0.0225826
MARCHF6 membrane associated ring-CH-type finger 6 -0.0223792
CLINT1 clathrin interactor 1 -0.0223281
STAU1 staufen double-stranded RNA binding protein 1 -0.0222174
TPI1 triosephosphate isomerase 1 -0.0216511
NPEPPS aminopeptidase puromycin sensitive -0.0212407
PDE4D phosphodiesterase 4D, cAMP-specific -0.021224
PDIA4 protein disulfide isomerase family A, member 4 -0.0209941
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0208797
CANX calnexin -0.0206563
TPM4 tropomyosin 4 -0.0204704
RPS27A ribosomal protein S27a -0.0203999
TOP1 topoisomerase (DNA) I -0.0203906
UBE2B ubiquitin-conjugating enzyme E2B -0.0202829
SLC25A36 solute carrier family 25 (pyrimidine nucleotide carrier), member 36 -0.0202459
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0202363
KRT19 keratin 19, type I -0.0201621
PJA2 praja ring finger 2, E3 ubiquitin protein ligase -0.0201371
RPL36A ribosomal protein L36a -0.0197863
NFE2L2 nuclear factor, erythroid 2-like 2 -0.0197782
ARID4B AT rich interactive domain 4B (RBP1-like) -0.0197285
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta -0.0195207