Dimethyl fumarate_NCI-H661 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Dimethyl fumarate perturbation in NCI-H661 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Dimethyl fumarate_NCI-H661 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
PEG10 paternally expressed 10 0.145853
PABPC1 poly(A) binding protein, cytoplasmic 1 0.132491
ERBB4 erb-b2 receptor tyrosine kinase 4 0.124586
CDH10 cadherin 10, type 2 (T2-cadherin) 0.122061
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.108449
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0744451
POTEF POTE ankyrin domain family, member F 0.0742175
GPC3 glypican 3 0.0727056
CDH6 cadherin 6, type 2, K-cadherin (fetal kidney) 0.0692786
ACTG1 actin gamma 1 0.0678705
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats 0.0659713
H1-0 H1.0 linker histone 0.0623835
TENM3 teneurin transmembrane protein 3 0.0591797
CENPF centromere protein F, 350/400kDa 0.0567512
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0567017
ITGAV integrin, alpha V 0.0540055
PDGFC platelet derived growth factor C 0.0536327
HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 0.0484793
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0477312
YES1 YES proto-oncogene 1, Src family tyrosine kinase 0.0472165
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 0.0463001
CCN2 cellular communication network factor 2 0.0462964
BAZ2A bromodomain adjacent to zinc finger domain, 2A 0.043822
ZC3HAV1 zinc finger CCCH-type, antiviral 1 0.0436939
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0434937
BZW1 basic leucine zipper and W2 domains 1 0.0430554
USP9X ubiquitin specific peptidase 9, X-linked 0.0429827
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 0.0418157
GNAS GNAS complex locus 0.041372
MPG N-methylpurine-DNA glycosylase 0.0395075
CTNNA3 catenin (cadherin-associated protein), alpha 3 0.0391905
TMSB4X thymosin beta 4, X-linked 0.0375622
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0375199
GULP1 GULP, engulfment adaptor PTB domain containing 1 0.0374768
SFRP4 secreted frizzled-related protein 4 0.0373796
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0370636
ANXA1 annexin A1 0.0365727
SRRM2 serine/arginine repetitive matrix 2 0.0361332
CS citrate synthase 0.0356987
MEIS2 Meis homeobox 2 0.035496
METAP2 methionyl aminopeptidase 2 0.0353131
HEY1 hes-related family bHLH transcription factor with YRPW motif 1 0.0351715
ZNF608 zinc finger protein 608 0.0349774
CXADR coxsackie virus and adenovirus receptor 0.0342872
SF3B1 splicing factor 3b, subunit 1, 155kDa 0.0340133
PCLO piccolo presynaptic cytomatrix protein 0.0338083
LYST lysosomal trafficking regulator 0.0336018
ATP5F1B ATP synthase F1 subunit beta 0.0327826
PCM1 pericentriolar material 1 0.0325433
PARD3B par-3 family cell polarity regulator beta 0.0325145
CBX3 chromobox homolog 3 0.0324173
ARHGAP15 Rho GTPase activating protein 15 0.0322229
COTL1 coactosin-like F-actin binding protein 1 0.0321526
FER fer (fps/fes related) tyrosine kinase 0.0320966
FAM171B family with sequence similarity 171, member B 0.0320654
YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta 0.0317646
GLO1 glyoxalase I 0.0317006
KPNA2 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) 0.0316265
PRKDC protein kinase, DNA-activated, catalytic polypeptide 0.0314463
MRPS30 mitochondrial ribosomal protein S30 0.0309579
RFPL4B ret finger protein-like 4B 0.0308206
TMEM64 transmembrane protein 64 0.0307905
FOXP2 forkhead box P2 0.0305483
WDR43 WD repeat domain 43 0.0304841
RPS2 ribosomal protein S2 0.0304779
TUBB tubulin, beta class I 0.0301039
ACTR2 ARP2 actin-related protein 2 homolog (yeast) 0.0298919
PRRC2A proline-rich coiled-coil 2A 0.0294177
FIGN fidgetin 0.0286727
CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 0.0285544
TNPO1 transportin 1 0.0284983
ANXA5 annexin A5 0.0283948
IFIH1 interferon induced with helicase C domain 1 0.0281011
TCEA1 transcription elongation factor A (SII), 1 0.0274923
DARS1 aspartyl-tRNA synthetase 1 0.0270015
GALNTL6 polypeptide N-acetylgalactosaminyltransferase-like 6 0.0268626
KPNB1 karyopherin (importin) beta 1 0.0267456
MORF4L2 mortality factor 4 like 2 0.0265595
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 0.0264718
COL1A2 collagen, type I, alpha 2 0.0264071
HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) 0.0262946
EIF4G1 eukaryotic translation initiation factor 4 gamma, 1 0.0262367
H1-5 H1.5 linker histone, cluster member 0.026191
SP3 Sp3 transcription factor 0.0260425
RBM25 RNA binding motif protein 25 0.026026
PAICS phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase 0.0259348
ADGRL2 adhesion G protein-coupled receptor L2 0.025775
PROS1 protein S (alpha) 0.0254593
CCNA2 cyclin A2 0.0251695
TMEM123 transmembrane protein 123 0.0250906
RAI1 retinoic acid induced 1 0.0250538
ZC3H12B zinc finger CCCH-type containing 12B 0.0247515
DLX2 distal-less homeobox 2 0.024623
EPRS1 glutamyl-prolyl-tRNA synthetase 1 0.024622
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0243792
DSTN destrin (actin depolymerizing factor) 0.0242465
POLR2B polymerase (RNA) II (DNA directed) polypeptide B, 140kDa 0.0241189
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0239425
CITED2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 0.0238736
SNX6 sorting nexin 6 0.0238675

decreased expression

Symbol Name Standardized Value
TMSB10 thymosin beta 10 -0.103871
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.065098
AHNAK AHNAK nucleoprotein -0.0634334
COL11A1 collagen, type XI, alpha 1 -0.0613337
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A -0.0573019
TRIO trio Rho guanine nucleotide exchange factor -0.0512202
HDAC9 histone deacetylase 9 -0.0505353
NTM neurotrimin -0.0493341
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 -0.0471024
FNDC3B fibronectin type III domain containing 3B -0.047015
UBC ubiquitin C -0.0453895
NIPBL Nipped-B homolog (Drosophila) -0.0452486
MLLT10 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 -0.0441858
ATXN2 ataxin 2 -0.0437254
WSB1 WD repeat and SOCS box containing 1 -0.0436005
CAMKMT calmodulin-lysine N-methyltransferase -0.0399451
KDM3A lysine (K)-specific demethylase 3A -0.0397515
MED13L mediator complex subunit 13-like -0.0396836
NAP1L1 nucleosome assembly protein 1-like 1 -0.039305
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 -0.0389716
RPS27A ribosomal protein S27a -0.0388705
RPL23 ribosomal protein L23 -0.0380056
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0377583
CSNK1A1 casein kinase 1, alpha 1 -0.0375935
BMPR1A bone morphogenetic protein receptor, type IA -0.0369851
YAP1 Yes-associated protein 1 -0.0363416
RPLP2 ribosomal protein, large, P2 -0.0355215
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.034762
PRRC2C proline-rich coiled-coil 2C -0.0333061
PGK1 phosphoglycerate kinase 1 -0.0329718
SIPA1L3 signal-induced proliferation-associated 1 like 3 -0.0328922
NUP58 nucleoporin 58 -0.0327497
SMG1 SMG1 phosphatidylinositol 3-kinase-related kinase -0.0326521
HMCN1 hemicentin 1 -0.0321748
NDRG1 N-myc downstream regulated 1 -0.032029
KMT2E lysine (K)-specific methyltransferase 2E -0.0320196
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0317214
RPLP1 ribosomal protein, large, P1 -0.0316941
MARCHF6 membrane associated ring-CH-type finger 6 -0.0310737
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0308195
OGA O-GlcNAcase -0.0304041
FN1 fibronectin 1 -0.0302876
GNAQ guanine nucleotide binding protein (G protein), q polypeptide -0.0297715
RFX7 regulatory factor X, 7 -0.0294601
SMYD3 SET and MYND domain containing 3 -0.0293678
RAD51B RAD51 paralog B -0.0290145
MYO6 myosin VI -0.0289654
PHIP pleckstrin homology domain interacting protein -0.028961
OPHN1 oligophrenin 1 -0.0284565
VPS13B vacuolar protein sorting 13 homolog B (yeast) -0.0282934
AP3B1 adaptor-related protein complex 3, beta 1 subunit -0.0281799
MACF1 microtubule-actin crosslinking factor 1 -0.028175
PTMA prothymosin, alpha -0.0276673
ANKRD33B ankyrin repeat domain 33B -0.0275194
SF3B2 splicing factor 3b, subunit 2, 145kDa -0.0272006
PTPRJ protein tyrosine phosphatase, receptor type, J -0.0271725
UBE2K ubiquitin-conjugating enzyme E2K -0.0271663
PRELID2 PRELI domain containing 2 -0.0269904
CCNY cyclin Y -0.0268858
RPL35A ribosomal protein L35a -0.0268208
FMNL2 formin-like 2 -0.0267535
RYBP RING1 and YY1 binding protein -0.0265735
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 -0.0263705
RAPGEF2 Rap guanine nucleotide exchange factor (GEF) 2 -0.0253995
MAP3K2 mitogen-activated protein kinase kinase kinase 2 -0.0253363
TENT2 terminal nucleotidyltransferase 2 -0.0253339
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) -0.0252355
MRTFA myocardin related transcription factor A -0.0250954
MCTP1 multiple C2 domains, transmembrane 1 -0.0249235
SSBP2 single-stranded DNA binding protein 2 -0.0247646
RPS8 ribosomal protein S8 -0.0245811
ZFAND3 zinc finger, AN1-type domain 3 -0.0245803
QKI QKI, KH domain containing, RNA binding -0.0244417
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0243645
BAIAP2L1 BAI1-associated protein 2-like 1 -0.0243167
ARID4B AT rich interactive domain 4B (RBP1-like) -0.0242871
STRN3 striatin, calmodulin binding protein 3 -0.0242498
ERBIN erbb2 interacting protein -0.0242416
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 -0.0242231
MYO10 myosin X -0.0237342
CTBP2 C-terminal binding protein 2 -0.0234735
TBL1X transducin (beta)-like 1X-linked -0.02345
UBN2 ubinuclein 2 -0.0233265
CARD16 caspase recruitment domain family, member 16 -0.0231358
PICALM phosphatidylinositol binding clathrin assembly protein -0.0230433
FTL ferritin, light polypeptide -0.0229941
AKT3 v-akt murine thymoma viral oncogene homolog 3 -0.0229758
BAZ1A bromodomain adjacent to zinc finger domain, 1A -0.0229596
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 -0.0228469
FLNB filamin B, beta -0.0226712
HECTD1 HECT domain containing E3 ubiquitin protein ligase 1 -0.0225684
RERE arginine-glutamic acid dipeptide (RE) repeats -0.0225567
SQSTM1 sequestosome 1 -0.0224477
BIRC6 baculoviral IAP repeat containing 6 -0.0223895
TANC1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 -0.0223455
AGTPBP1 ATP/GTP binding protein 1 -0.0223175
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase -0.0222509
NEBL nebulette -0.0222483
JARID2 jumonji, AT rich interactive domain 2 -0.0221763
RPL31 ribosomal protein L31 -0.022127