Doxorubicin (hydrochloride)_NCI-H2030 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Doxorubicin (hydrochloride) perturbation in NCI-H2030 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Doxorubicin (hydrochloride)_NCI-H2030 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0476197
IGF2 insulin-like growth factor 2 0.0369722
IGFBP3 insulin-like growth factor binding protein 3 0.0329008
FTH1 ferritin, heavy polypeptide 1 0.0289466
RPL35A ribosomal protein L35a 0.0254657
NDRG1 N-myc downstream regulated 1 0.0236408
PYGL phosphorylase, glycogen, liver 0.0197314
RPL13A ribosomal protein L13a 0.0184011
HLA-A major histocompatibility complex, class I, A 0.0167344
EGFR epidermal growth factor receptor 0.0167287
UGCG UDP-glucose ceramide glucosyltransferase 0.0154154
PRR16 proline rich 16 0.0152369
SHANK2 SH3 and multiple ankyrin repeat domains 2 0.0151335
DDIT4 DNA-damage-inducible transcript 4 0.014893
CYTH1 cytohesin 1 0.0147031
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0146048
CABIN1 calcineurin binding protein 1 0.0145476
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 0.0137401
ZC3HAV1 zinc finger CCCH-type, antiviral 1 0.013608
STC2 stanniocalcin 2 0.0133558
EGR1 early growth response 1 0.0132927
RBPJ recombination signal binding protein for immunoglobulin kappa J region 0.0125329
MAP3K5 mitogen-activated protein kinase kinase kinase 5 0.0123375
BHLHE40 basic helix-loop-helix family, member e40 0.012112
KAT6B K(lysine) acetyltransferase 6B 0.0116412
CNOT1 CCR4-NOT transcription complex, subunit 1 0.0115449
IGFBP4 insulin-like growth factor binding protein 4 0.0113978
LGALS1 lectin, galactoside-binding, soluble, 1 0.0113334
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0112179
HLA-B major histocompatibility complex, class I, B 0.0107186
FMNL2 formin-like 2 0.010597
ADM adrenomedullin 0.0105101
SLC39A14 solute carrier family 39 (zinc transporter), member 14 0.0104295
CAMK1D calcium/calmodulin-dependent protein kinase ID 0.0103813
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0103783
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like 0.0103361
CCL5 chemokine (C-C motif) ligand 5 0.0103359
RAD51B RAD51 paralog B 0.010006
RSRC2 arginine/serine-rich coiled-coil 2 0.00999532
VEGFA vascular endothelial growth factor A 0.00987437
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 0.00984401
UBASH3B ubiquitin associated and SH3 domain containing B 0.0096264
SMOC1 SPARC related modular calcium binding 1 0.00944197
CHST11 carbohydrate (chondroitin 4) sulfotransferase 11 0.00940203
RBM25 RNA binding motif protein 25 0.00935922
CCNL1 cyclin L1 0.00923932
GOLGA4 golgin A4 0.00920572
WAC WW domain containing adaptor with coiled-coil 0.00919596
TRIO trio Rho guanine nucleotide exchange factor 0.00914014
HMGA1 high mobility group AT-hook 1 0.00903108
PNN pinin, desmosome associated protein 0.00899821
ITGB5 integrin, beta 5 0.00891264
CITED2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 0.00874453
RPS27 ribosomal protein S27 0.0086658
P4HB prolyl 4-hydroxylase, beta polypeptide 0.00846398
EIF3E eukaryotic translation initiation factor 3, subunit E 0.00846068
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 0.00845575
KIRREL1 kirre like nephrin family adhesion molecule 1 0.00844645
RPS2 ribosomal protein S2 0.00842517
PRKCA protein kinase C, alpha 0.00834757
ANKRD11 ankyrin repeat domain 11 0.00825212
MYO1B myosin IB 0.00824724
RAP1GAP2 RAP1 GTPase activating protein 2 0.00824525
SPIRE1 spire-type actin nucleation factor 1 0.00821762
ELOVL5 ELOVL fatty acid elongase 5 0.00820945
MED15 mediator complex subunit 15 0.00813686
UBA6 ubiquitin-like modifier activating enzyme 6 0.00795423
HM13 histocompatibility (minor) 13 0.00790002
DHX15 DEAH (Asp-Glu-Ala-His) box helicase 15 0.00781489
BMPR1B bone morphogenetic protein receptor, type IB 0.00778034
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 0.00776044
DOCK4 dedicator of cytokinesis 4 0.00762819
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.00760232
ANGPTL4 angiopoietin-like 4 0.00759157
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 0.00757688
PPDPF pancreatic progenitor cell differentiation and proliferation factor 0.00754179
NR2C1 nuclear receptor subfamily 2, group C, member 1 0.00752946
BAIAP2L1 BAI1-associated protein 2-like 1 0.00748078
FLNB filamin B, beta 0.00743863
SREBF2 sterol regulatory element binding transcription factor 2 0.00730307
USP37 ubiquitin specific peptidase 37 0.00729355
KMT2C lysine (K)-specific methyltransferase 2C 0.00729134
SRRM1 serine/arginine repetitive matrix 1 0.00722176
TNS3 tensin 3 0.00705166
RPRD1B regulation of nuclear pre-mRNA domain containing 1B 0.00704094
TGFBI transforming growth factor, beta-induced, 68kDa 0.00695945
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.00692331
CXCL1 chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) 0.00676799
PMM2 phosphomannomutase 2 0.00674234
ENO2 enolase 2 (gamma, neuronal) 0.00671923
TERF2IP telomeric repeat binding factor 2, interacting protein 0.00667965
ANKRD33B ankyrin repeat domain 33B 0.00667147
BZW2 basic leucine zipper and W2 domains 2 0.00662824
CASC3 cancer susceptibility candidate 3 0.00656939
USP36 ubiquitin specific peptidase 36 0.00655375
RAB8B RAB8B, member RAS oncogene family 0.00649924
HMGA2 high mobility group AT-hook 2 0.00648477
ZFP36 ZFP36 ring finger protein 0.0064724
LOXL2 lysyl oxidase-like 2 0.00642365
PCBP2 poly(rC) binding protein 2 0.00639561

decreased expression

Symbol Name Standardized Value
GRAMD1B GRAM domain containing 1B -0.184874
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.163206
PM20D1 peptidase M20 domain containing 1 -0.136133
PDE4D phosphodiesterase 4D, cAMP-specific -0.125915
TM4SF1 transmembrane 4 L six family member 1 -0.12301
VIM vimentin -0.117603
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.10889
RPS27A ribosomal protein S27a -0.106391
TXNRD1 thioredoxin reductase 1 -0.0980212
UBC ubiquitin C -0.0937131
RPL23 ribosomal protein L23 -0.0899308
MT2A metallothionein 2A -0.0849588
FTL ferritin, light polypeptide -0.0807603
TMSB10 thymosin beta 10 -0.0752111
FGB fibrinogen beta chain -0.0630186
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0628066
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.059855
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0594888
AHNAK AHNAK nucleoprotein -0.0586544
PTMA prothymosin, alpha -0.0579721
ENO1 enolase 1, (alpha) -0.056945
ASPH aspartate beta-hydroxylase -0.056607
TFPI2 tissue factor pathway inhibitor 2 -0.0527607
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.050558
AP2B1 adaptor-related protein complex 2, beta 1 subunit -0.0466552
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0460789
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 -0.0453595
AKAP12 A kinase (PRKA) anchor protein 12 -0.0427585
CALM2 calmodulin 2 (phosphorylase kinase, delta) -0.0418544
RPL19 ribosomal protein L19 -0.0418202
PRKDC protein kinase, DNA-activated, catalytic polypeptide -0.0410944
LANCL1 LanC lantibiotic synthetase component C-like 1 (bacterial) -0.0404755
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C -0.039334
RTN4 reticulon 4 -0.0391969
ACTG1 actin gamma 1 -0.0374
S100A6 S100 calcium binding protein A6 -0.0369659
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) -0.0364066
XRCC5 X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining) -0.0362543
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0361573
PKM pyruvate kinase, muscle -0.035742
FAM107B family with sequence similarity 107, member B -0.0348105
POTEF POTE ankyrin domain family, member F -0.0339954
PDIA6 protein disulfide isomerase family A, member 6 -0.0334561
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0322374
CCT5 chaperonin containing TCP1, subunit 5 (epsilon) -0.0314537
SFPQ splicing factor proline/glutamine-rich -0.0308087
CFLAR CASP8 and FADD-like apoptosis regulator -0.0299746
BIRC3 baculoviral IAP repeat containing 3 -0.0299108
RPL4 ribosomal protein L4 -0.0298344
SLC38A2 solute carrier family 38, member 2 -0.029677
WWOX WW domain containing oxidoreductase -0.0293277
IER3 immediate early response 3 -0.0285432
TNPO1 transportin 1 -0.028517
ACTR2 ARP2 actin-related protein 2 homolog (yeast) -0.0281045
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0276417
BICC1 BicC family RNA binding protein 1 -0.0265263
NTN4 netrin 4 -0.0263408
MAP3K20 mitogen-activated protein kinase kinase kinase 20 -0.025799
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.025707
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.0255845
YBX1 Y box binding protein 1 -0.0251387
SRP14 signal recognition particle 14kDa (homologous Alu RNA binding protein) -0.0249467
CALU calumenin -0.024528
EIF4A1 eukaryotic translation initiation factor 4A1 -0.0240723
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 -0.023114
MKI67 marker of proliferation Ki-67 -0.0230287
KIF5B kinesin family member 5B -0.0225799
AREG amphiregulin -0.0224792
DST dystonin -0.0223857
NAP1L1 nucleosome assembly protein 1-like 1 -0.0217858
LRPPRC leucine-rich pentatricopeptide repeat containing -0.0216634
TPM3 tropomyosin 3 -0.0216538
RHOA ras homolog family member A -0.0214285
RPS25 ribosomal protein S25 -0.0210002
RPL15 ribosomal protein L15 -0.0209677
C15ORF48 chromosome 15 open reading frame 48 -0.020895
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 -0.0208613
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) -0.0207868
TUBA1B tubulin, alpha 1b -0.0207637
AHR aryl hydrocarbon receptor -0.0206746
JMJD1C jumonji domain containing 1C -0.0206397
CCT8 chaperonin containing TCP1, subunit 8 (theta) -0.0206333
NUSAP1 nucleolar and spindle associated protein 1 -0.0206301
NFE2L2 nuclear factor, erythroid 2-like 2 -0.0205099
PTGES3 prostaglandin E synthase 3 (cytosolic) -0.0204769
MACF1 microtubule-actin crosslinking factor 1 -0.0203942
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0203395
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle -0.0202978
SERBP1 SERPINE1 mRNA binding protein 1 -0.0200892
PDIA4 protein disulfide isomerase family A, member 4 -0.0199754
CCT4 chaperonin containing TCP1, subunit 4 (delta) -0.0199352
EEF2 eukaryotic translation elongation factor 2 -0.0197842
NIPBL Nipped-B homolog (Drosophila) -0.0197379
SRGN serglycin -0.0196982
DLGAP5 discs, large (Drosophila) homolog-associated protein 5 -0.0196146
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 -0.0195485
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0193015
NNMT nicotinamide N-methyltransferase -0.0192129
NEGR1 neuronal growth regulator 1 -0.0191978
FGG fibrinogen gamma chain -0.0191561