Doxorubicin (hydrochloride)_NCI-H23 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Doxorubicin (hydrochloride) perturbation in NCI-H23 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Doxorubicin (hydrochloride)_NCI-H23 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
EEF2 eukaryotic translation elongation factor 2 0.107171
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.10201
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0584309
TPM3 tropomyosin 3 0.0566413
PCBP2 poly(rC) binding protein 2 0.0557514
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0528988
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa 0.0502221
MKI67 marker of proliferation Ki-67 0.0489197
CENPF centromere protein F, 350/400kDa 0.0468042
RRM2 ribonucleotide reductase M2 0.0459951
SMC4 structural maintenance of chromosomes 4 0.0455402
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0427891
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0408976
NCAPD2 non-SMC condensin I complex, subunit D2 0.0387207
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.0379873
TXNRD1 thioredoxin reductase 1 0.0368045
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) 0.0343633
CEP192 centrosomal protein 192kDa 0.0339943
PRKDC protein kinase, DNA-activated, catalytic polypeptide 0.0325801
KPNA4 karyopherin alpha 4 (importin alpha 3) 0.0325707
PHIP pleckstrin homology domain interacting protein 0.0324848
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0323775
ADAR adenosine deaminase, RNA-specific 0.0320822
SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 0.0316996
SNRNP200 small nuclear ribonucleoprotein 200kDa (U5) 0.0316804
TRIO trio Rho guanine nucleotide exchange factor 0.0315261
WNK1 WNK lysine deficient protein kinase 1 0.0308999
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 0.0306201
DIAPH3 diaphanous-related formin 3 0.0303722
XPO1 exportin 1 0.0296583
ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) 0.0295987
MELK maternal embryonic leucine zipper kinase 0.0285641
KDM2A lysine (K)-specific demethylase 2A 0.028303
TPX2 TPX2, microtubule-associated 0.0282286
ZFAND3 zinc finger, AN1-type domain 3 0.0278213
MYH9 myosin, heavy chain 9, non-muscle 0.0278187
CKAP5 cytoskeleton associated protein 5 0.0271314
HSPA8 heat shock 70kDa protein 8 0.0271202
ANP32E acidic (leucine-rich) nuclear phosphoprotein 32 family, member E 0.0271142
MARCHF4 membrane associated ring-CH-type finger 4 0.026907
NOTCH2 notch 2 0.0258583
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0253136
ANLN anillin, actin binding protein 0.0252828
CNOT1 CCR4-NOT transcription complex, subunit 1 0.0247568
MIS18BP1 MIS18 binding protein 1 0.024263
XPOT exportin, tRNA 0.023934
MED13L mediator complex subunit 13-like 0.0237344
TFPI2 tissue factor pathway inhibitor 2 0.0235909
SRPK2 SRSF protein kinase 2 0.0234408
USP9X ubiquitin specific peptidase 9, X-linked 0.0233558
NUP58 nucleoporin 58 0.0232171
GMDS GDP-mannose 4,6-dehydratase 0.023106
DLGAP5 discs, large (Drosophila) homolog-associated protein 5 0.0229619
PCNX1 pecanex 1 0.0227217
EXOC4 exocyst complex component 4 0.0226066
BUB1 BUB1 mitotic checkpoint serine/threonine kinase 0.0223963
PNN pinin, desmosome associated protein 0.0220814
SPTAN1 spectrin, alpha, non-erythrocytic 1 0.0219768
GIGYF2 GRB10 interacting GYF protein 2 0.021965
NCAPG2 non-SMC condensin II complex, subunit G2 0.0219204
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0216778
RFC3 replication factor C (activator 1) 3, 38kDa 0.0213346
IQGAP3 IQ motif containing GTPase activating protein 3 0.0212685
RAD51B RAD51 paralog B 0.0211401
IPO7 importin 7 0.0211057
NUSAP1 nucleolar and spindle associated protein 1 0.0210543
KIF18B kinesin family member 18B 0.0210053
SFPQ splicing factor proline/glutamine-rich 0.0208536
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0206375
CCT3 chaperonin containing TCP1, subunit 3 (gamma) 0.0205915
PTPN11 protein tyrosine phosphatase, non-receptor type 11 0.0205033
DOCK3 dedicator of cytokinesis 3 0.0204857
RLIM ring finger protein, LIM domain interacting 0.0203749
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0203197
MSH6 mutS homolog 6 0.0202565
KIF4A kinesin family member 4A 0.0201582
ZCCHC7 zinc finger, CCHC domain containing 7 0.0201191
TWF1 twinfilin actin binding protein 1 0.0198953
GPSM2 G-protein signaling modulator 2 0.0196774
NCAPH non-SMC condensin I complex, subunit H 0.0196321
SF3B1 splicing factor 3b, subunit 1, 155kDa 0.0196174
ESYT2 extended synaptotagmin-like protein 2 0.019557
GMPS guanine monphosphate synthase 0.0194487
BRD2 bromodomain containing 2 0.0193616
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 0.0193493
PLCB4 phospholipase C, beta 4 0.0193257
CLTC clathrin, heavy chain (Hc) 0.019304
NUMA1 nuclear mitotic apparatus protein 1 0.01921
CPNE1 copine I 0.0192092
TBC1D5 TBC1 domain family, member 5 0.0192015
BBX bobby sox homolog (Drosophila) 0.0191659
ANKRD36 ankyrin repeat domain 36 0.0191615
KMT2D lysine (K)-specific methyltransferase 2D 0.0190957
PFKP phosphofructokinase, platelet 0.018941
EIF4B eukaryotic translation initiation factor 4B 0.0188779
SPAG9 sperm associated antigen 9 0.018793
EIF3A eukaryotic translation initiation factor 3, subunit A 0.0187827
PPP6R3 protein phosphatase 6, regulatory subunit 3 0.0187381
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.0186019
SP3 Sp3 transcription factor 0.0185963

decreased expression

Symbol Name Standardized Value
AKAP12 A kinase (PRKA) anchor protein 12 -0.354554
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.214962
TMSB10 thymosin beta 10 -0.116263
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 -0.106145
YBX3 Y box binding protein 3 -0.0965793
OSMR oncostatin M receptor -0.0928118
TPT1 tumor protein, translationally-controlled 1 -0.0855773
RPL35A ribosomal protein L35a -0.0743931
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0731415
THSD4 thrombospondin, type I, domain containing 4 -0.0690948
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 -0.0641985
HLA-B major histocompatibility complex, class I, B -0.062789
RPL37 ribosomal protein L37 -0.0623935
RPL37A ribosomal protein L37a -0.0594641
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0590494
PTMA prothymosin, alpha -0.0588644
ACTG1 actin gamma 1 -0.0569886
RPS8 ribosomal protein S8 -0.0567738
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.0550165
PHLDB2 pleckstrin homology-like domain, family B, member 2 -0.0527669
IFI6 interferon, alpha-inducible protein 6 -0.0513402
TM4SF1 transmembrane 4 L six family member 1 -0.0507657
RPS3 ribosomal protein S3 -0.0494494
MT2A metallothionein 2A -0.0491547
PDE4D phosphodiesterase 4D, cAMP-specific -0.0488286
PDE10A phosphodiesterase 10A -0.0480412
RPL26 ribosomal protein L26 -0.0476077
RPL31 ribosomal protein L31 -0.0475586
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 -0.0472277
FTL ferritin, light polypeptide -0.0464391
IER3 immediate early response 3 -0.046277
BASP1 brain abundant, membrane attached signal protein 1 -0.0459048
AFF3 AF4/FMR2 family, member 3 -0.0456436
HMGA2 high mobility group AT-hook 2 -0.0453409
TPM4 tropomyosin 4 -0.0451449
RIMS2 regulating synaptic membrane exocytosis 2 -0.0428622
CAVIN1 caveolae associated protein 1 -0.0426426
RPS29 ribosomal protein S29 -0.0417035
VCL vinculin -0.0413254
EML4 echinoderm microtubule associated protein like 4 -0.040916
RPLP1 ribosomal protein, large, P1 -0.0405063
RPL38 ribosomal protein L38 -0.0404033
NCOA7 nuclear receptor coactivator 7 -0.0396182
ERRFI1 ERBB receptor feedback inhibitor 1 -0.0391384
RPL11 ribosomal protein L11 -0.0381123
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta -0.0380176
RPS21 ribosomal protein S21 -0.0379071
RPS10 ribosomal protein S10 -0.0378389
RPL23 ribosomal protein L23 -0.0377792
MYL12A myosin, light chain 12A, regulatory, non-sarcomeric -0.0376037
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0374696
WSB1 WD repeat and SOCS box containing 1 -0.0371553
RPS27A ribosomal protein S27a -0.0371249
RPS19 ribosomal protein S19 -0.0366366
RPS24 ribosomal protein S24 -0.0363102
RPS27 ribosomal protein S27 -0.0357962
STC1 stanniocalcin 1 -0.0354241
RPS6 ribosomal protein S6 -0.0353601
RPL9 ribosomal protein L9 -0.0352004
RPL36A ribosomal protein L36a -0.0350602
RPLP2 ribosomal protein, large, P2 -0.0349511
RBM39 RNA binding motif protein 39 -0.0347386
RPS15 ribosomal protein S15 -0.0346878
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0346872
GNAS GNAS complex locus -0.0335304
S100A10 S100 calcium binding protein A10 -0.0334231
IGF1R insulin-like growth factor 1 receptor -0.0324553
RPL34 ribosomal protein L34 -0.0324541
DOCK5 dedicator of cytokinesis 5 -0.032333
RPL36 ribosomal protein L36 -0.0322547
FBXO11 F-box protein 11 -0.0313092
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.031013
FMNL2 formin-like 2 -0.0306274
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0301479
RPL19 ribosomal protein L19 -0.0299666
RPL12 ribosomal protein L12 -0.0297713
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.0295546
ATG7 autophagy related 7 -0.0290825
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C -0.0289067
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 -0.0287234
RPS25 ribosomal protein S25 -0.0283455
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.0282133
IGF2 insulin-like growth factor 2 -0.0280145
LOC102724023 ES1 protein homolog, mitochondrial -0.0278588
KPNB1 karyopherin (importin) beta 1 -0.027354
VIM vimentin -0.026915
RPL8 ribosomal protein L8 -0.0268609
PARP14 poly (ADP-ribose) polymerase family, member 14 -0.0268093
RYR3 ryanodine receptor 3 -0.0266174
SLC25A37 solute carrier family 25 (mitochondrial iron transporter), member 37 -0.0265792
MARCKS myristoylated alanine-rich protein kinase C substrate -0.0265409
EIF1 eukaryotic translation initiation factor 1 -0.0263754
ARPC2 actin related protein 2/3 complex, subunit 2, 34kDa -0.0260306
RPL30 ribosomal protein L30 -0.0251825
SENP6 SUMO1/sentrin specific peptidase 6 -0.0251471
KLF6 Kruppel-like factor 6 -0.0250881
RPS12 ribosomal protein S12 -0.0241911
COL5A2 collagen, type V, alpha 2 -0.0239717
S100A11 S100 calcium binding protein A11 -0.0236719
ITSN1 intersectin 1 (SH3 domain protein) -0.0235722