Doxorubicin (hydrochloride)_SHP-77 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Doxorubicin (hydrochloride) perturbation in SHP-77 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Doxorubicin (hydrochloride)_SHP-77 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
TENM1 teneurin transmembrane protein 1 0.0807844
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0775531
CENPF centromere protein F, 350/400kDa 0.0618936
PDE10A phosphodiesterase 10A 0.0488683
PEG10 paternally expressed 10 0.0403225
PCM1 pericentriolar material 1 0.0373155
PCCA propionyl CoA carboxylase, alpha polypeptide 0.0358576
TXNRD1 thioredoxin reductase 1 0.0349651
MKI67 marker of proliferation Ki-67 0.032128
CKAP5 cytoskeleton associated protein 5 0.0319876
PRKDC protein kinase, DNA-activated, catalytic polypeptide 0.0307222
ECT2 epithelial cell transforming 2 0.0306859
NCOR1 nuclear receptor corepressor 1 0.0284116
XPO1 exportin 1 0.0272129
G2E3 G2/M-phase specific E3 ubiquitin protein ligase 0.0270134
PDE4B phosphodiesterase 4B, cAMP-specific 0.0269905
AFF1 AF4/FMR2 family, member 1 0.0267753
MATR3 matrin 3 0.0259886
MIS18BP1 MIS18 binding protein 1 0.0259436
NUF2 NUF2, NDC80 kinetochore complex component 0.0255792
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0251906
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0250565
CADM1 cell adhesion molecule 1 0.0245244
SGO2 shugoshin 2 0.0236147
MYEF2 myelin expression factor 2 0.0228556
SINHCAF SIN3-HDAC complex associated factor 0.022833
MTMR7 myotubularin related protein 7 0.0226788
BUB1B BUB1 mitotic checkpoint serine/threonine kinase B 0.0225837
ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) 0.0225744
SMC4 structural maintenance of chromosomes 4 0.0224283
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0218246
DIAPH3 diaphanous-related formin 3 0.021795
FCHSD2 FCH and double SH3 domains 2 0.0216468
SMOC1 SPARC related modular calcium binding 1 0.0216165
ATP5F1B ATP synthase F1 subunit beta 0.0214058
TTK TTK protein kinase 0.0212295
CHST11 carbohydrate (chondroitin 4) sulfotransferase 11 0.0209452
AOPEP aminopeptidase O (putative) 0.0205873
TPX2 TPX2, microtubule-associated 0.0204274
RTN4 reticulon 4 0.0202314
KDM3A lysine (K)-specific demethylase 3A 0.0198962
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A 0.0194191
SPAG5 sperm associated antigen 5 0.0193667
PBK PDZ binding kinase 0.0191032
PPME1 protein phosphatase methylesterase 1 0.0190131
CDCA2 cell division cycle associated 2 0.0189981
KDM1A lysine (K)-specific demethylase 1A 0.0188442
KNL1 kinetochore scaffold 1 0.0187965
SASH1 SAM and SH3 domain containing 1 0.0187825
BCAS3 breast carcinoma amplified sequence 3 0.0186946
MACF1 microtubule-actin crosslinking factor 1 0.0185867
ANLN anillin, actin binding protein 0.0185107
YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta 0.0184511
GPCPD1 glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) 0.0183635
RAD21 RAD21 homolog (S. pombe) 0.0182452
REV3L REV3-like, polymerase (DNA directed), zeta, catalytic subunit 0.0180421
CDK5RAP2 CDK5 regulatory subunit associated protein 2 0.0180199
NT5C3A 5'-nucleotidase, cytosolic IIIA 0.0179836
KIF11 kinesin family member 11 0.0179639
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.0176349
UBAC2 UBA domain containing 2 0.0175064
SLC7A2 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 0.0173513
HP1BP3 heterochromatin protein 1, binding protein 3 0.0171702
RACGAP1 Rac GTPase activating protein 1 0.0171311
LIFR leukemia inhibitory factor receptor alpha 0.0171278
GAS2L3 growth arrest-specific 2 like 3 0.0169609
H1-0 H1.0 linker histone 0.0169288
MYH10 myosin, heavy chain 10, non-muscle 0.0168983
KIF5B kinesin family member 5B 0.0168514
NUMA1 nuclear mitotic apparatus protein 1 0.0163899
PIAS2 protein inhibitor of activated STAT, 2 0.0163398
GRAMD4 GRAM domain containing 4 0.016184
PGK1 phosphoglycerate kinase 1 0.0161503
AURKA aurora kinase A 0.0160831
NAMPT nicotinamide phosphoribosyltransferase 0.0160671
IQGAP3 IQ motif containing GTPase activating protein 3 0.0159988
CA8 carbonic anhydrase VIII 0.0155718
ZNF292 zinc finger protein 292 0.0155033
CCDC88A coiled-coil domain containing 88A 0.0154442
PCBP2 poly(rC) binding protein 2 0.015415
PAICS phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase 0.0153762
TUBA1B tubulin, alpha 1b 0.0152453
NIPSNAP2 nipsnap homolog 2 0.0152172
PDS5B PDS5 cohesin associated factor B 0.0150334
BUB1 BUB1 mitotic checkpoint serine/threonine kinase 0.0149902
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0148651
NUDT3 nudix (nucleoside diphosphate linked moiety X)-type motif 3 0.0148134
NCKAP1 NCK-associated protein 1 0.0147634
PGAP1 post-GPI attachment to proteins 1 0.014739
CAMTA1 calmodulin binding transcription activator 1 0.014688
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0146078
NPEPPS aminopeptidase puromycin sensitive 0.0145926
MCM8 minichromosome maintenance complex component 8 0.0145391
TUBB tubulin, beta class I 0.0144279
MLLT10 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 0.0142904
PER1 period circadian clock 1 0.0142618
RGS3 regulator of G-protein signaling 3 0.0142069
NCAM1 neural cell adhesion molecule 1 0.01407
SCARB2 scavenger receptor class B, member 2 0.0140341
ASCL1 achaete-scute family bHLH transcription factor 1 0.0140054

decreased expression

Symbol Name Standardized Value
GPC6 glypican 6 -0.181536
NRG1 neuregulin 1 -0.11718
ADARB2 adenosine deaminase, RNA-specific, B2 (non-functional) -0.103811
RORA RAR-related orphan receptor A -0.0942529
MCL1 myeloid cell leukemia 1 -0.090892
NALF1 NALCN channel auxiliary factor 1 -0.0783371
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0762419
SNTG1 syntrophin, gamma 1 -0.0753795
RIMS2 regulating synaptic membrane exocytosis 2 -0.0745831
STC1 stanniocalcin 1 -0.0670205
RPL37A ribosomal protein L37a -0.0646998
SGIP1 SH3-domain GRB2-like (endophilin) interacting protein 1 -0.0598441
DOCK5 dedicator of cytokinesis 5 -0.0590289
TSHZ2 teashirt zinc finger homeobox 2 -0.0590179
SMYD3 SET and MYND domain containing 3 -0.0548699
CAMK1D calcium/calmodulin-dependent protein kinase ID -0.052985
EFNA5 ephrin-A5 -0.0503135
MCTP1 multiple C2 domains, transmembrane 1 -0.0503027
KCNB2 potassium channel, voltage gated Shab related subfamily B, member 2 -0.0494529
KIF26B kinesin family member 26B -0.0474765
RPS3 ribosomal protein S3 -0.0464872
STXBP5 syntaxin binding protein 5 (tomosyn) -0.0445989
IGFBP5 insulin-like growth factor binding protein 5 -0.0443721
LSAMP limbic system-associated membrane protein -0.0442142
GRIK1 glutamate receptor, ionotropic, kainate 1 -0.0438442
NDRG1 N-myc downstream regulated 1 -0.0438308
BACE2 beta-site APP-cleaving enzyme 2 -0.0427808
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.042354
PTCHD4 patched domain containing 4 -0.0421965
ZBTB20 zinc finger and BTB domain containing 20 -0.0421139
GPC5 glypican 5 -0.0416565
PTMA prothymosin, alpha -0.0412294
ERRFI1 ERBB receptor feedback inhibitor 1 -0.0409858
NKAIN2 Na+/K+ transporting ATPase interacting 2 -0.0408962
KCNMB3 potassium channel subfamily M regulatory beta subunit 3 -0.0400346
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0387074
ST18 suppression of tumorigenicity 18, zinc finger -0.0379531
RPL37 ribosomal protein L37 -0.0370961
RPLP1 ribosomal protein, large, P1 -0.036481
RPS6 ribosomal protein S6 -0.0357369
LINGO2 leucine rich repeat and Ig domain containing 2 -0.0356207
CNTNAP2 contactin associated protein-like 2 -0.0351009
KLHL29 kelch-like family member 29 -0.0349448
CDK13 cyclin-dependent kinase 13 -0.0346273
ESRRG estrogen-related receptor gamma -0.0343102
CACNA1A calcium channel, voltage-dependent, P/Q type, alpha 1A subunit -0.0341888
EPHA6 EPH receptor A6 -0.0340609
MAP1B microtubule-associated protein 1B -0.034047
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0337082
MT2A metallothionein 2A -0.0336266
IGFBP2 insulin-like growth factor binding protein 2, 36kDa -0.0336152
NBEA neurobeachin -0.0330034
COL22A1 collagen, type XXII, alpha 1 -0.0329666
RPL26 ribosomal protein L26 -0.0326402
ACTG1 actin gamma 1 -0.0318851
MYCBP2 MYC binding protein 2, E3 ubiquitin protein ligase -0.0314906
EYA2 EYA transcriptional coactivator and phosphatase 2 -0.0309709
CNKSR3 CNKSR family member 3 -0.0307853
HOMER1 homer scaffolding protein 1 -0.0307783
RPS8 ribosomal protein S8 -0.0299225
RPS12 ribosomal protein S12 -0.0298771
APP amyloid beta (A4) precursor protein -0.0297994
VGF VGF nerve growth factor inducible -0.0295232
NAV2 neuron navigator 2 -0.0293725
TOP1 topoisomerase (DNA) I -0.0289295
RPL11 ribosomal protein L11 -0.0286376
SCG2 secretogranin II -0.0283871
TPT1 tumor protein, translationally-controlled 1 -0.0280357
DGKD diacylglycerol kinase, delta 130kDa -0.027959
RPL31 ribosomal protein L31 -0.0278406
SCFD1 sec1 family domain containing 1 -0.0277675
RPH3AL rabphilin 3A-like (without C2 domains) -0.0275856
SDK1 sidekick cell adhesion molecule 1 -0.0274269
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 -0.0273273
DENND4A DENN/MADD domain containing 4A -0.0273267
FAM13A family with sequence similarity 13, member A -0.027188
FTL ferritin, light polypeptide -0.0270829
INHBA inhibin, beta A -0.0269959
RPL30 ribosomal protein L30 -0.0267282
ZFHX3 zinc finger homeobox 3 -0.0266905
EGR1 early growth response 1 -0.0265121
RPS27A ribosomal protein S27a -0.0264693
NELL1 NEL-like 1 (chicken) -0.0261832
RPS17 ribosomal protein S17 -0.0250998
HM13 histocompatibility (minor) 13 -0.0250322
BIRC6 baculoviral IAP repeat containing 6 -0.0247346
ASPH aspartate beta-hydroxylase -0.0243898
RPS27 ribosomal protein S27 -0.0243153
TMSB10 thymosin beta 10 -0.024097
GNL3L guanine nucleotide binding protein-like 3 (nucleolar)-like -0.0236588
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 -0.023174
ARFGEF3 ARFGEF family member 3 -0.0230696
RPL36 ribosomal protein L36 -0.022983
MDGA2 MAM domain containing glycosylphosphatidylinositol anchor 2 -0.022861
PAEP progestagen-associated endometrial protein -0.0228212
AKAP13 A kinase (PRKA) anchor protein 13 -0.0227162
NANOS1 nanos homolog 1 (Drosophila) -0.0225825
NCKAP5 NCK-associated protein 5 -0.0223398
RACK1 receptor for activated C kinase 1 -0.02223
ASIC2 acid sensing (proton gated) ion channel 2 -0.0220436