Dyscalculia Gene Set

Dataset DISEASES Text-mining Gene-Disease Association Evidence Scores 2025
Category disease or phenotype associations
Type disease
Description A learning disability involving a math disability can cause such difficulties as learning math concepts (such as quantity, place value, and time), difficulty memorizing math facts, difficulty organizing numbers, and understanding how problems are organized on the page. (Human Disease Ontology, DOID_12568)
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Genes

145 genes co-occuring with the disease Dyscalculia in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.

Symbol Name Standardized Value
TUBGCP5 tubulin, gamma complex associated protein 5 2.592
NIPA2 non imprinted in Prader-Willi/Angelman syndrome 2 2.488
NIPA1 non imprinted in Prader-Willi/Angelman syndrome 1 2.459
CYFIP1 cytoplasmic FMR1 interacting protein 1 2.338
KIAA0319 KIAA0319 2.305
DNAAF4 dynein axonemal assembly factor 4 2.295
CCDC136 coiled-coil domain containing 136 2.145
CHMP2B charged multivesicular body protein 2B 2.13
IGFBP2 insulin-like growth factor binding protein 2, 36kDa 2.105
DCDC2 doublecortin domain containing 2 2.102
MYO18B myosin XVIIIB 2.1
PSEN1 presenilin 1 2.095
PSEN2 presenilin 2 2.073
OSTF1 osteoclast stimulating factor 1 2.023
GRN granulin 1.947
ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila) 1.944
TARDBP TAR DNA binding protein 1.934
MAPT microtubule-associated protein tau 1.933
APP amyloid beta (A4) precursor protein 1.924
APOE apolipoprotein E 1.858
VCP valosin containing protein 1.843
ATP2C2 ATPase, Ca++ transporting, type 2C, member 2 1.823
ZNF385D zinc finger protein 385D 1.82
OR8J3 olfactory receptor, family 8, subfamily J, member 3 1.785
OR5T2 olfactory receptor, family 5, subfamily T, member 2 1.772
GCFC2 GC-rich sequence DNA-binding factor 2 1.76
PRNP prion protein 1.694
MRPL19 mitochondrial ribosomal protein L19 1.674
OR8I2 olfactory receptor, family 8, subfamily I, member 2 1.666
C9ORF72 chromosome 9 open reading frame 72 1.664
BAZ1B bromodomain adjacent to zinc finger domain, 1B 1.663
DIP2A DIP2 disco-interacting protein 2 homolog A (Drosophila) 1.649
FAM43A family with sequence similarity 43, member A 1.648
FMR1 fragile X mental retardation 1 1.636
POLI polymerase (DNA directed) iota 1.596
OR11H2 olfactory receptor, family 11, subfamily H, member 2 1.517
PGPEP1 pyroglutamyl-peptidase I 1.487
NRSN1 neurensin 1 1.472
OR8H2 olfactory receptor, family 8, subfamily H, member 2 1.47
CELF5 CUGBP, Elav-like family member 5 1.47
SORL1 sortilin-related receptor, L(DLR class) A repeats containing 1.469
OR5D16 olfactory receptor, family 5, subfamily D, member 16 1.456
OR5D14 olfactory receptor, family 5, subfamily D, member 14 1.454
OR5AS1 olfactory receptor, family 5, subfamily AS, member 1 1.451
OR8K5 olfactory receptor, family 8, subfamily K, member 5 1.449
RBFOX2 RNA binding protein, fox-1 homolog (C. elegans) 2 1.448
TM4SF20 transmembrane 4 L six family member 20 1.446
OR5F1 olfactory receptor, family 5, subfamily F, member 1 1.434
ZNF74 zinc finger protein 74 1.432
OR5J2 olfactory receptor, family 5, subfamily J, member 2 1.422
OR4A15 olfactory receptor, family 4, subfamily A, member 15 1.421
NKAIN3 Na+/K+ transporting ATPase interacting 3 1.415
LSG1 large 60S subunit nuclear export GTPase 1 1.414
FUS FUS RNA binding protein 1.412
FOXP2 forkhead box P2 1.409
FZD9 frizzled class receptor 9 1.401
PRMT2 protein arginine methyltransferase 2 1.395
OR5W2 olfactory receptor, family 5, subfamily W, member 2 1.393
OR8H3 olfactory receptor, family 8, subfamily H, member 3 1.393
CELF4 CUGBP, Elav-like family member 4 1.39
TREM2 triggering receptor expressed on myeloid cells 2 1.372
ABCA7 ATP-binding cassette, sub-family A (ABC1), member 7 1.35
FLNC filamin C, gamma 1.348
COMT catechol-O-methyltransferase 1.343
PRR29 proline rich 29 1.338
CHCHD10 coiled-coil-helix-coiled-coil-helix domain containing 10 1.328
ZNF277 zinc finger protein 277 1.325
OR4C15 olfactory receptor, family 4, subfamily C, member 15 1.312
HTR3B 5-hydroxytryptamine (serotonin) receptor 3B, ionotropic 1.303
CNTNAP2 contactin associated protein-like 2 1.299
OR4C16 olfactory receptor, family 4, subfamily C, member 16 (gene/pseudogene) 1.274
IKBKG inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma 1.262
OR5D13 olfactory receptor, family 5, subfamily D, member 13 (gene/pseudogene) 1.259
MFSD6 major facilitator superfamily domain containing 6 1.256
CMIP c-Maf inducing protein 1.254
OR5I1 olfactory receptor, family 5, subfamily I, member 1 1.251
LIMK1 LIM domain kinase 1 1.247
DYM dymeclin 1.243
GUCY1A2 guanylate cyclase 1, soluble, alpha 2 1.241
OR5L2 olfactory receptor, family 5, subfamily L, member 2 1.24
CEBPD CCAAT/enhancer binding protein (C/EBP), delta 1.236
CYFIP2 cytoplasmic FMR1 interacting protein 2 1.233
BAIAP2 BAI1-associated protein 2 1.232
NF1 neurofibromin 1 1.23
OR5D18 olfactory receptor, family 5, subfamily D, member 18 1.222
CYREN cell cycle regulator of NHEJ 1.22
EIF2B3 eukaryotic translation initiation factor 2B, subunit 3 gamma, 58kDa 1.216
DGKI diacylglycerol kinase, iota 1.215
OR4A16 olfactory receptor, family 4, subfamily A, member 16 1.213
ZNF737 zinc finger protein 737 1.212
UBQLN2 ubiquilin 2 1.204
AUTS2 autism susceptibility candidate 2 1.202
IRF2BPL interferon regulatory factor 2 binding protein-like 1.201
RTN4 reticulon 4 1.2
SPOCK1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 1.195
RIPOR2 RHO family interacting cell polarization regulator 2 1.19
BIN1 bridging integrator 1 1.182
MPV17L MPV17 mitochondrial membrane protein-like 1.179
EIF2B4 eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa 1.172
MARF1 meiosis regulator and mRNA stability factor 1 1.167
ZNF804A zinc finger protein 804A 1.165
TMEM106B transmembrane protein 106B 1.146
MC5R melanocortin 5 receptor 1.14
DRD4 dopamine receptor D4 1.139
ABCB10 ATP-binding cassette, sub-family B (MDR/TAP), member 10 1.131
GRIK1 glutamate receptor, ionotropic, kainate 1 1.129
DCTN1 dynactin 1 1.125
PCNT pericentrin 1.123
ABI3 ABI family, member 3 1.123
CCPG1 cell cycle progression 1 1.122
PHETA2 PH domain containing endocytic trafficking adaptor 2 1.119
PDXDC1 pyridoxal-dependent decarboxylase domain containing 1 1.118
OR4K5 olfactory receptor, family 4, subfamily K, member 5 1.112
CHMP3 charged multivesicular body protein 3 1.111
RNF103-CHMP3 RNF103-CHMP3 readthrough 1.109
MKRN3 makorin ring finger protein 3 1.108
VEPH1 ventricular zone expressed PH domain-containing 1 1.107
SNCA synuclein, alpha (non A4 component of amyloid precursor) 1.101
PFAS phosphoribosylformylglycinamidine synthase 1.099
OR4K2 olfactory receptor, family 4, subfamily K, member 2 1.098
SQSTM1 sequestosome 1 1.098
S100B S100 calcium binding protein B 1.097
FXR2 fragile X mental retardation, autosomal homolog 2 1.094
GFAP glial fibrillary acidic protein 1.093
CHMP2A charged multivesicular body protein 2A 1.092
NME8 NME/NM23 family member 8 1.088
OR4K1 olfactory receptor, family 4, subfamily K, member 1 1.083
DAZAP1 DAZ associated protein 1 1.081
OR5L1 olfactory receptor, family 5, subfamily L, member 1 (gene/pseudogene) 1.076
C6ORF136 chromosome 6 open reading frame 136 1.072
OR4C11 olfactory receptor, family 4, subfamily C, member 11 1.066
TRIM51 tripartite motif-containing 51 1.061
VWA3B von Willebrand factor A domain containing 3B 1.045
CNTNAP5 contactin associated protein-like 5 1.041
ARC activity-regulated cytoskeleton-associated protein 1.032
NPIPA5 nuclear pore complex interacting protein family, member A5 1.031
MAGEL2 melanoma antigen family L2 1.026
BDNF brain-derived neurotrophic factor 1.024
DLD dihydrolipoamide dehydrogenase 1.024
NRXN1 neurexin 1 1.02
CEP95 centrosomal protein 95kDa 1.018
MAP1B microtubule-associated protein 1B 1.008
GPCPD1 glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) 1.008
FXR1 fragile X mental retardation, autosomal homolog 1 1.005
PCYOX1L prenylcysteine oxidase 1 like 1.0