EB2 Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: Burkitts lymphoma (B lymphocyte primary) (Cell Line Ontology, CLO_0002873)
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Genes

242 genes with high or low copy number in EB2 relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
WDR60 WD repeat domain 60 3.2803
THADA thyroid adenoma associated 3.27263
SULT2B1 sulfotransferase family, cytosolic, 2B, member 1 2.50299
HOMER2 homer scaffolding protein 2 2.42914
GSTT2B glutathione S-transferase theta 2B (gene/pseudogene) 2.06009
CRYBB2P1 crystallin, beta B2 pseudogene 1 2.01032
IGLL3P immunoglobulin lambda-like polypeptide 3, pseudogene 1.97905
RSRP1 arginine/serine-rich protein 1 1.90646
LRP5L low density lipoprotein receptor-related protein 5-like 1.85742
NOMO3 NODAL modulator 3 1.85351
KIR2DL1 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 1 1.81039
CENPBD1P1 CENPB DNA-binding domains containing 1 pseudogene 1 1.7825
MZF1 myeloid zinc finger 1 1.7481
LOC100131691 1.74802
KIR2DS4 killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 4 1.73325
GALNT15 polypeptide N-acetylgalactosaminyltransferase 15 1.68582
KIR3DL2 killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 2 1.66054
ALPP alkaline phosphatase, placental 1.6471
GSTM2 glutathione S-transferase mu 2 (muscle) 1.63259
POMZP3 POM121 and ZP3 fusion 1.60624
THOC3 THO complex 3 1.60372
FSCB fibrous sheath CABYR binding protein 1.59723
CROCC ciliary rootlet coiled-coil, rootletin 1.56288
OR2T35 olfactory receptor, family 2, subfamily T, member 35 1.54921
CCL3L3 chemokine (C-C motif) ligand 3-like 3 1.45934
CCL3L1 chemokine (C-C motif) ligand 3-like 1 1.45934
CCL4L2 chemokine (C-C motif) ligand 4-like 2 1.45815
CCL4L1 chemokine (C-C motif) ligand 4-like 1 1.45815
SHOX short stature homeobox 1.42958

low copy number

Symbol Name Standardized Value
LOC100506207 uncharacterized LOC100506207 -3.21049
PRKCA protein kinase C, alpha -3.17732
RBPJ recombination signal binding protein for immunoglobulin kappa J region -2.85124
SRRM3 serine/arginine repetitive matrix 3 -2.80022
ARHGAP39 Rho GTPase activating protein 39 -2.5986
FGF14-IT1 FGF14 intronic transcript 1 -2.59447
ZMYND11 zinc finger, MYND-type containing 11 -2.59447
APCDD1L-AS1 APCDD1L antisense RNA 1 (head to head) -2.59447
POTEH POTE ankyrin domain family, member H -2.59447
FUT9 fucosyltransferase 9 (alpha (1,3) fucosyltransferase) -2.59447
FRY furry homolog (Drosophila) -2.59427
NAMPT nicotinamide phosphoribosyltransferase -2.43685
LINC01014 long intergenic non-protein coding RNA 1014 -2.40898
INSR insulin receptor -2.3514
UTRN utrophin -2.3514
FGF14 fibroblast growth factor 14 -2.05849
TMEM135 transmembrane protein 135 -2.0088
GRIP1 glutamate receptor interacting protein 1 -2.00401
SIL1 SIL1 nucleotide exchange factor -2.00401
ADAM6 ADAM metallopeptidase domain 6 (pseudogene) -1.91143
DAZ2 deleted in azoospermia 2 -1.88706
ELOVL6 ELOVL fatty acid elongase 6 -1.88276
POLA1 polymerase (DNA directed), alpha 1, catalytic subunit -1.87329
ATP9B ATPase, class II, type 9B -1.82348
DAPK1 death-associated protein kinase 1 -1.81816
MSTO2P misato family member 2, pseudogene -1.75358
DAP3 death associated protein 3 -1.75346
ENTPD3 ectonucleoside triphosphate diphosphohydrolase 3 -1.72188
FGF1 fibroblast growth factor 1 (acidic) -1.71451
ANKRD30BP2 ankyrin repeat domain 30B pseudogene 2 -1.6823
HDGFL1 hepatoma derived growth factor-like 1 -1.65424
KLHL1 kelch-like family member 1 -1.65405
ENTPD3-AS1 ENTPD3 antisense RNA 1 -1.64506
LINC00469 long intergenic non-protein coding RNA 469 -1.63139
RAD51B RAD51 paralog B -1.63094
KAAG1 kidney associated antigen 1 -1.62929
MRS2 MRS2 magnesium transporter -1.62929
ALDH5A1 aldehyde dehydrogenase 5 family, member A1 -1.62916
NRSN1 neurensin 1 -1.62895
ZNF322 zinc finger protein 322 -1.62069
ABT1 activator of basal transcription 1 -1.62069
C6ORF62 chromosome 6 open reading frame 62 -1.59602
TDP2 tyrosyl-DNA phosphodiesterase 2 -1.59601
ACOT13 acyl-CoA thioesterase 13 -1.59601
HIST1H3G histone cluster 1, H3g -1.58827
HIST1H2BI histone cluster 1, H2bi -1.58826
HIST1H4F histone cluster 1, H4f -1.58821
HIST1H2BH histone cluster 1, H2bh -1.58821
HIST1H3F histone cluster 1, H3f -1.58821
HIST1H4G histone cluster 1, H4g -1.58821
HIST1H2AB histone cluster 1, H2ab -1.58819
HCG11 HLA complex group 11 (non-protein coding) -1.58803
HMGN4 high mobility group nucleosomal binding domain 4 -1.58803
BTN1A1 butyrophilin, subfamily 1, member A1 -1.58802
LOC285819 uncharacterized LOC285819 -1.58802
BTN3A2 butyrophilin, subfamily 3, member A2 -1.58799
BTN2A2 butyrophilin, subfamily 2, member A2 -1.58799
BTN2A3P butyrophilin, subfamily 2, member A3, pseudogene -1.58786
HIST1H2APS1 histone cluster 1, H2a, pseudogene 1 -1.58782
SLC17A4 solute carrier family 17, member 4 -1.58772
SLC17A1 solute carrier family 17 (organic anion transporter), member 1 -1.58771
BTN3A3 butyrophilin, subfamily 3, member A3 -1.58699
SCARNA27 small Cajal body-specific RNA 27 -1.5863
EEF1E1 eukaryotic translation elongation factor 1 epsilon 1 -1.58624
EEF1E1-BLOC1S5 EEF1E1-BLOC1S5 readthrough (NMD candidate) -1.5862
BLOC1S5 biogenesis of lysosomal organelles complex-1, subunit 5, muted -1.5862
PIP5K1P1 phosphatidylinositol-4-phosphate 5-kinase, type I, pseudogene 1 -1.58619
CATSPER2 cation channel, sperm associated 2 -1.56836
NRN1 neuritin 1 -1.5668
GMNN geminin, DNA replication inhibitor -1.56554
KIAA0319 KIAA0319 -1.56542
HULC hepatocellular carcinoma up-regulated long non-coding RNA -1.56365
SLC35B3 solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B3 -1.56356
NBAT1 neuroblastoma associated transcript 1 -1.56292
PRL prolactin -1.56275
FAM65B family with sequence similarity 65, member B -1.55939
HIST1H3B histone cluster 1, H3b -1.55852
HIST1H4B histone cluster 1, H4b -1.55849
HIST1H3A histone cluster 1, H3a -1.55847
HIST1H1A histone cluster 1, H1a -1.55847
SLC17A2 solute carrier family 17, member 2 -1.55847
HIST1H4A histone cluster 1, H4a -1.55847
TRIM38 tripartite motif containing 38 -1.55845
HIST1H4H histone cluster 1, H4h -1.55842
HIST1H1C histone cluster 1, H1c -1.55837
BTN3A1 butyrophilin, subfamily 3, member A1 -1.55821
SLC17A3 solute carrier family 17 (organic anion transporter), member 3 -1.55807
HIST1H2AA histone cluster 1, H2aa -1.55795
HIST1H2BA histone cluster 1, H2ba -1.55795
CMAHP cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene -1.55789
SOX4 SRY (sex determining region Y)-box 4 -1.5578
SCGN secretagogin, EF-hand calcium binding protein -1.55776
TXNDC5 thioredoxin domain containing 5 (endoplasmic reticulum) -1.55631
SMIM13 small integral membrane protein 13 -1.55363
ERVFRD-1 endogenous retrovirus group FRD, member 1 -1.55359
ID4 inhibitor of DNA binding 4, dominant negative helix-loop-helix protein -1.55312
LOC100130357 uncharacterized LOC100130357 -1.55244
SIRT5 sirtuin 5 -1.55227
TBC1D7 TBC1 domain family, member 7 -1.55227
NOL7 nucleolar protein 7, 27kDa -1.55224
RANBP9 RAN binding protein 9 -1.55224
SNRNP48 small nuclear ribonucleoprotein 48kDa (U11/U12) -1.54786
RNF182 ring finger protein 182 -1.54703
FAM217A family with sequence similarity 217, member A -1.54481
FAM50B family with sequence similarity 50, member B -1.54479
BMP6 bone morphogenetic protein 6 -1.5405
NHLRC1 NHL repeat containing E3 ubiquitin protein ligase 1 -1.53895
TPMT thiopurine S-methyltransferase -1.53895
PPP1R3G protein phosphatase 1, regulatory subunit 3G -1.53809
SSR1 signal sequence receptor, alpha -1.53803
MIR3691 microRNA 3691 -1.53802
RIOK1 RIO kinase 1 -1.53598
RREB1 ras responsive element binding protein 1 -1.53581
CAGE1 cancer antigen 1 -1.53579
DSG3 desmoglein 3 -1.53299
RNF144B ring finger protein 144B -1.53076
HIST1H1D histone cluster 1, H1d -1.53032
ELOVL2 ELOVL fatty acid elongase 2 -1.52582
MAK male germ cell-associated kinase -1.52579
TMEM14B transmembrane protein 14B -1.52578
TMEM170B transmembrane protein 170B -1.52541
LINC00226 long intergenic non-protein coding RNA 226 -1.52374
HFE hemochromatosis -1.52084
HIST1H4C histone cluster 1, H4c -1.52081
HIST1H1T histone cluster 1, H1t -1.52081
MCUR1 mitochondrial calcium uniporter regulator 1 -1.51965
CD83 CD83 molecule -1.51962
SLC25A33 solute carrier family 25 (pyrimidine nucleotide carrier), member 33 -1.51943
ECI2 enoyl-CoA delta isomerase 2 -1.51756
PRPF4B pre-mRNA processing factor 4B -1.51752
RBM24 RNA binding motif protein 24 -1.51452
KDM1B lysine (K)-specific demethylase 1B -1.51195
KIF13A kinesin family member 13A -1.51192
DEK DEK proto-oncogene -1.51188
DSP desmoplakin -1.51183
TUBB2B tubulin, beta 2B class IIb -1.51137
LINC01011 long intergenic non-protein coding RNA 1011 -1.51136
TUBB2A tubulin, beta 2A class IIa -1.51132
LOC100507194 uncharacterized LOC100507194 -1.51132
HTATSF1P2 HIV-1 Tat specific factor 1 pseudogene 2 -1.5113
NQO2 NAD(P)H dehydrogenase, quinone 2 -1.5113
RPP40 ribonuclease P/MRP 40kDa subunit -1.51117
PRB2 proline-rich protein BstNI subfamily 2 -1.51081
FAM8A1 family with sequence similarity 8, member A1 -1.51071
NUP153 nucleoporin 153kDa -1.51064
BPHL biphenyl hydrolase-like (serine hydrolase) -1.50911
RIPK1 receptor (TNFRSF)-interacting serine-threonine kinase 1 -1.50906
MIR548A1 microRNA 548a-1 -1.50708
HIST1H3E histone cluster 1, H3e -1.50378
CD24 CD24 molecule -1.50333
LY86 lymphocyte antigen 86 -1.49954
TMEM14C transmembrane protein 14C -1.49944
GFOD1 glucose-fructose oxidoreductase domain containing 1 -1.49831
C6ORF201 chromosome 6 open reading frame 201 -1.49152
MIR4645 microRNA 4645 -1.48578
SERPINB9P1 serpin peptidase inhibitor, clade B (ovalbumin), member 9, pseudogene 1 -1.48576
SERPINB9 serpin peptidase inhibitor, clade B (ovalbumin), member 9 -1.48576
SERPINB6 serpin peptidase inhibitor, clade B (ovalbumin), member 6 -1.48575
GPLD1 glycosylphosphatidylinositol specific phospholipase D1 -1.48464
CKMT1A creatine kinase, mitochondrial 1A -1.48416
CDYL chromodomain protein, Y-like -1.48401
HIST1H2BC histone cluster 1, H2bc -1.47861
HIST1H2AC histone cluster 1, H2ac -1.47861
HIST1H2AE histone cluster 1, H2ae -1.47727
HIST1H2BG histone cluster 1, H2bg -1.47727
EDN1 endothelin 1 -1.47509
PAK1IP1 PAK1 interacting protein 1 -1.47454
LINC00518 long intergenic non-protein coding RNA 518 -1.47441
MIR5689 microRNA 5689 -1.47441
TFAP2A transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha) -1.47435
TFAP2A-AS1 TFAP2A antisense RNA 1 -1.47435
MIR4639 microRNA 4639 -1.47371
MYLIP myosin regulatory light chain interacting protein -1.47371
RPL23AP7 ribosomal protein L23a pseudogene 7 -1.4693
PKD1P1 polycystic kidney disease 1 (autosomal dominant) pseudogene 1 -1.45679
BTN2A1 butyrophilin, subfamily 2, member A1 -1.45368
HIST1H4D histone cluster 1, H4d -1.45356
HIST1H2BE histone cluster 1, H2be -1.45356
HIST1H4E histone cluster 1, H4e -1.45352
HIST1H3D histone cluster 1, H3d -1.45352
HIST1H2AD histone cluster 1, H2ad -1.45352
HIST1H2BF histone cluster 1, H2bf -1.45352
GCM2 glial cells missing homolog 2 (Drosophila) -1.45088
GMPR guanosine monophosphate reductase -1.45008
PXDC1 PX domain containing 1 -1.43171
HIST1H1E histone cluster 1, H1e -1.43138
SERPINB1 serpin peptidase inhibitor, clade B (ovalbumin), member 1 -1.43034
ADTRP androgen-dependent TFPI-regulating protein -1.42866
HIVEP1 human immunodeficiency virus type I enhancer binding protein 1 -1.41619
LY86-AS1 LY86 antisense RNA 1 -1.41225
LYRM4 LYR motif containing 4 -1.41177
HIST1H2BB histone cluster 1, H2bb -1.41158
HIST1H3C histone cluster 1, H3c -1.41158
HIST1H2BD histone cluster 1, H2bd -1.4104
WRNIP1 Werner helicase interacting protein 1 -1.40942
CAP2 CAP, adenylate cyclase-associated protein, 2 (yeast) -1.40749
LINC01600 long intergenic non-protein coding RNA 1600 -1.40582
FOXC1 forkhead box C1 -1.39419
F13A1 coagulation factor XIII, A1 polypeptide -1.39195
DTNBP1 dystrobrevin binding protein 1 -1.39188
SYCP2L synaptonemal complex protein 2-like -1.38805
C6ORF52 chromosome 6 open reading frame 52 -1.38799
TYW1 tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) -1.38544
ZNF705G zinc finger protein 705G -1.38132
E2F3 E2F transcription factor 3 -1.36848
ELOVL2-AS1 ELOVL2 antisense RNA 1 -1.36645
NEDD9 neural precursor cell expressed, developmentally down-regulated 9 -1.35113
HUS1B HUS1 checkpoint homolog b (S. pombe) -1.35104
FOXQ1 forkhead box Q1 -1.35099
FOXF2 forkhead box F2 -1.35089
GCNT2 glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group) -1.35076
IRF4 interferon regulatory factor 4 -1.34941
MBOAT1 membrane bound O-acyltransferase domain containing 1 -1.34736