EX229_SW 1088 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description EX229 perturbation in SW 1088 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the EX229_SW 1088 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.141294
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.103564
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 0.0527626
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0515674
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 0.0482026
TRA2A transformer 2 alpha homolog (Drosophila) 0.0463037
GOLGA4 golgin A4 0.0461948
ADM adrenomedullin 0.0453091
TENT5A terminal nucleotidyltransferase 5A 0.0444895
GFPT1 glutamine--fructose-6-phosphate transaminase 1 0.0418633
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 0.0396548
RPS6 ribosomal protein S6 0.0387174
NAMPT nicotinamide phosphoribosyltransferase 0.0382337
EIF1 eukaryotic translation initiation factor 1 0.0371167
B2M beta-2-microglobulin 0.0364882
CALR calreticulin 0.0361732
PDIA3 protein disulfide isomerase family A, member 3 0.0360263
FTL ferritin, light polypeptide 0.0356887
TFPI2 tissue factor pathway inhibitor 2 0.0323757
CANX calnexin 0.0311634
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0300554
NDRG1 N-myc downstream regulated 1 0.0282888
SND1 staphylococcal nuclease and tudor domain containing 1 0.0279884
NOP58 NOP58 ribonucleoprotein 0.0275082
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0271709
KMT2C lysine (K)-specific methyltransferase 2C 0.0270861
PTGES2 prostaglandin E synthase 2 0.0270831
SRP54 signal recognition particle 54kDa 0.0268063
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0267176
RPS12 ribosomal protein S12 0.0266301
HYCC1 hyccin PI4KA lipid kinase complex subunit 1 0.0266249
FNIP1 folliculin interacting protein 1 0.0265907
CLINT1 clathrin interactor 1 0.0262303
RPL34 ribosomal protein L34 0.0260155
HILPDA hypoxia inducible lipid droplet-associated 0.0258852
GPBP1 GC-rich promoter binding protein 1 0.0258699
COG6 component of oligomeric golgi complex 6 0.0258038
SF3B1 splicing factor 3b, subunit 1, 155kDa 0.0256748
INSIG2 insulin induced gene 2 0.0253965
RPS8 ribosomal protein S8 0.0253907
ZSWIM6 zinc finger, SWIM-type containing 6 0.0253153
GOLGB1 golgin B1 0.0249939
ARRDC3 arrestin domain containing 3 0.0246218
TPT1 tumor protein, translationally-controlled 1 0.0245452
SQSTM1 sequestosome 1 0.0243075
COG5 component of oligomeric golgi complex 5 0.0239506
DLG1 discs, large homolog 1 (Drosophila) 0.0233966
GARS1 glycyl-tRNA synthetase 1 0.0233653
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.0233382
COPA coatomer protein complex, subunit alpha 0.023288
DPM1 dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit 0.0232534
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0231699
CNOT1 CCR4-NOT transcription complex, subunit 1 0.0231377
RPL11 ribosomal protein L11 0.0229283
MTDH metadherin 0.0224909
BACE2 beta-site APP-cleaving enzyme 2 0.0222622
RPL23 ribosomal protein L23 0.0222114
PGM3 phosphoglucomutase 3 0.0219723
AP3B1 adaptor-related protein complex 3, beta 1 subunit 0.0218911
RPL35A ribosomal protein L35a 0.021652
EIF2AK3 eukaryotic translation initiation factor 2-alpha kinase 3 0.0215541
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.0214838
EIF2A eukaryotic translation initiation factor 2A, 65kDa 0.0212057
ALCAM activated leukocyte cell adhesion molecule 0.0210334
CDKAL1 CDK5 regulatory subunit associated protein 1-like 1 0.0206982
TENT2 terminal nucleotidyltransferase 2 0.0203162
ESF1 ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) 0.0202299
LGALS3 lectin, galactoside-binding, soluble, 3 0.0196376
INSIG1 insulin induced gene 1 0.0196249
HERPUD1 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 0.0196079
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 0.0195281
CADM1 cell adhesion molecule 1 0.0194873
RAB1A RAB1A, member RAS oncogene family 0.0194702
UBE2D3 ubiquitin-conjugating enzyme E2D 3 0.0193866
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0191844
CYLD cylindromatosis (turban tumor syndrome) 0.0189951
ANKRD17 ankyrin repeat domain 17 0.018887
BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 0.0188524
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0187352
PRRC2C proline-rich coiled-coil 2C 0.0184399
PIK3R3 phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 0.0183163
INTS6 integrator complex subunit 6 0.0182584
MARCHF6 membrane associated ring-CH-type finger 6 0.0182219
RPL12 ribosomal protein L12 0.0181817
WDR43 WD repeat domain 43 0.0181693
RYBP RING1 and YY1 binding protein 0.0181127
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 0.0179663
VEGFA vascular endothelial growth factor A 0.0178176
SEC23B Sec23 homolog B (S. cerevisiae) 0.0177831
RPL17-C18ORF32 RPL17-C18orf32 readthrough 0.0173098
FUS FUS RNA binding protein 0.0172112
KLHDC10 kelch domain containing 10 0.0170922
UBE2O ubiquitin-conjugating enzyme E2O 0.0170665
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0170207
PRKCE protein kinase C, epsilon 0.01686
ATF4 activating transcription factor 4 0.0168269
AP3S1 adaptor-related protein complex 3, sigma 1 subunit 0.0167829
UBA6 ubiquitin-like modifier activating enzyme 6 0.0165036
EIF3B eukaryotic translation initiation factor 3, subunit B 0.016386
COPB2 coatomer protein complex, subunit beta 2 (beta prime) 0.0162723

decreased expression

Symbol Name Standardized Value
FN1 fibronectin 1 -0.283933
IGFBP3 insulin-like growth factor binding protein 3 -0.165497
COL6A3 collagen, type VI, alpha 3 -0.152162
VIM vimentin -0.136264
TIMP3 TIMP metallopeptidase inhibitor 3 -0.120766
CXCL8 chemokine (C-X-C motif) ligand 8 -0.117955
COL1A1 collagen, type I, alpha 1 -0.108981
LOX lysyl oxidase -0.108762
TMSB10 thymosin beta 10 -0.105744
COL1A2 collagen, type I, alpha 2 -0.102452
PRSS23 protease, serine, 23 -0.0930046
ERRFI1 ERBB receptor feedback inhibitor 1 -0.091459
MT2A metallothionein 2A -0.0902189
POTEF POTE ankyrin domain family, member F -0.0842448
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.0823261
F3 coagulation factor III (thromboplastin, tissue factor) -0.0794999
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 -0.0724701
TGFBI transforming growth factor, beta-induced, 68kDa -0.0705595
GLIS3 GLIS family zinc finger 3 -0.0660443
MT1X metallothionein 1X -0.0654748
PSD3 pleckstrin and Sec7 domain containing 3 -0.0632225
TPM4 tropomyosin 4 -0.0620708
MAP1B microtubule-associated protein 1B -0.0610073
AHNAK AHNAK nucleoprotein -0.0608937
LOXL2 lysyl oxidase-like 2 -0.0598052
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0581875
HMGA2 high mobility group AT-hook 2 -0.0551053
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 -0.0540633
CDH13 cadherin 13 -0.0524245
TPM1 tropomyosin 1 (alpha) -0.0515229
TNS3 tensin 3 -0.0512694
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0509199
P4HA2 prolyl 4-hydroxylase, alpha polypeptide II -0.0500642
COL6A1 collagen, type VI, alpha 1 -0.0484811
CALD1 caldesmon 1 -0.048412
CDK6 cyclin-dependent kinase 6 -0.0478046
CD44 CD44 molecule (Indian blood group) -0.0474997
AKAP12 A kinase (PRKA) anchor protein 12 -0.0467067
VCL vinculin -0.0464565
UBC ubiquitin C -0.0464086
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0463671
COL5A1 collagen, type V, alpha 1 -0.0454841
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0452985
ERC2 ELKS/RAB6-interacting/CAST family member 2 -0.0448558
MARCKS myristoylated alanine-rich protein kinase C substrate -0.0445208
DPYD dihydropyrimidine dehydrogenase -0.0445174
RTN4 reticulon 4 -0.0442881
AKT3 v-akt murine thymoma viral oncogene homolog 3 -0.0421502
CALU calumenin -0.0418178
FBXL7 F-box and leucine-rich repeat protein 7 -0.0416858
CAV1 caveolin 1, caveolae protein, 22kDa -0.0394705
TRIO trio Rho guanine nucleotide exchange factor -0.0390992
FAM20C family with sequence similarity 20, member C -0.0389914
MACF1 microtubule-actin crosslinking factor 1 -0.0389703
LAMC1 laminin, gamma 1 (formerly LAMB2) -0.0384339
DNAH11 dynein, axonemal, heavy chain 11 -0.0383274
NAV1 neuron navigator 1 -0.0372499
ENO1 enolase 1, (alpha) -0.0370873
ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) -0.0367698
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.0366229
ACTG1 actin gamma 1 -0.0365942
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 -0.0365299
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0362693
ITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide) -0.0358886
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.0345633
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) -0.0338579
TMSB4X thymosin beta 4, X-linked -0.03346
HLA-B major histocompatibility complex, class I, B -0.0333811
GRB10 growth factor receptor-bound protein 10 -0.033064
SEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A -0.0329048
COL4A2 collagen, type IV, alpha 2 -0.0325243
FNDC3B fibronectin type III domain containing 3B -0.0322444
EGFR epidermal growth factor receptor -0.032107
HIP1 huntingtin interacting protein 1 -0.0320599
STC1 stanniocalcin 1 -0.0319485
ZBTB20 zinc finger and BTB domain containing 20 -0.0308549
CLIC4 chloride intracellular channel 4 -0.030534
RAI14 retinoic acid induced 14 -0.0303901
SRPK2 SRSF protein kinase 2 -0.0294424
SPTBN1 spectrin, beta, non-erythrocytic 1 -0.0292731
COL5A2 collagen, type V, alpha 2 -0.0290903
ASPH aspartate beta-hydroxylase -0.0290484
TXNIP thioredoxin interacting protein -0.0290009
GSE1 Gse1 coiled-coil protein -0.0285628
ARPC2 actin related protein 2/3 complex, subunit 2, 34kDa -0.0285498
MYH9 myosin, heavy chain 9, non-muscle -0.0283396
PRELID2 PRELI domain containing 2 -0.028275
MICAL2 microtubule associated monooxygenase, calponin and LIM domain containing 2 -0.0282489
RERE arginine-glutamic acid dipeptide (RE) repeats -0.0281833
SEPTIN7 septin 7 -0.0281737
EXT1 exostosin glycosyltransferase 1 -0.02788
ATXN1 ataxin 1 -0.0276897
FTH1 ferritin, heavy polypeptide 1 -0.0273989
PGK1 phosphoglycerate kinase 1 -0.0272256
CCNI cyclin I -0.027008
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0269805
BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) -0.0269019
ANXA5 annexin A5 -0.0268191
TAS2R14 taste receptor, type 2, member 14 -0.0267532
SMAD3 SMAD family member 3 -0.0267311