Encorafenib_HepG2/C3A Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Encorafenib perturbation in HepG2/C3A cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Encorafenib_HepG2/C3A drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
IGF2 insulin-like growth factor 2 0.520393
C3 complement component 3 0.162311
APOB apolipoprotein B 0.105314
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.0976496
SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 0.0949835
ENO1 enolase 1, (alpha) 0.0936829
LRMDA leucine rich melanocyte differentiation associated 0.090124
TF transferrin 0.0828412
CP ceruloplasmin (ferroxidase) 0.0800944
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.0790719
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) 0.0775488
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 0.0696254
FN1 fibronectin 1 0.0643222
SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 0.0633672
TPT1 tumor protein, translationally-controlled 1 0.0577575
ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila) 0.0566029
DSPP dentin sialophosphoprotein 0.0522145
FTL ferritin, light polypeptide 0.0521871
IGFBP1 insulin-like growth factor binding protein 1 0.0497421
EGR1 early growth response 1 0.0486173
MBNL1 muscleblind-like splicing regulator 1 0.048557
RPS8 ribosomal protein S8 0.0466104
GPC3 glypican 3 0.0458117
EEF2 eukaryotic translation elongation factor 2 0.0453601
EIF1 eukaryotic translation initiation factor 1 0.043726
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0435147
RPL23 ribosomal protein L23 0.0434189
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0431112
LDHA lactate dehydrogenase A 0.0425645
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide 0.0418117
RPL37 ribosomal protein L37 0.0410789
YME1L1 YME1-like 1 ATPase 0.0404072
RPL37A ribosomal protein L37a 0.0389887
RPS12 ribosomal protein S12 0.0385449
ZMIZ1 zinc finger, MIZ-type containing 1 0.0379406
TXNRD1 thioredoxin reductase 1 0.036177
SRRM1 serine/arginine repetitive matrix 1 0.0361206
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0358693
FOXP1 forkhead box P1 0.0357838
RRAS2 related RAS viral (r-ras) oncogene homolog 2 0.0357321
TNFSF14 tumor necrosis factor (ligand) superfamily, member 14 0.0356291
SLC38A1 solute carrier family 38, member 1 0.0351665
A2M alpha-2-macroglobulin 0.034344
SMURF1 SMAD specific E3 ubiquitin protein ligase 1 0.0340988
ARFGEF3 ARFGEF family member 3 0.0337378
SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) 0.033512
CFB complement factor B 0.0330216
RPL31 ribosomal protein L31 0.0327048
NEDD9 neural precursor cell expressed, developmentally down-regulated 9 0.0323612
PTPRK protein tyrosine phosphatase, receptor type, K 0.0321469
AHSG alpha-2-HS-glycoprotein 0.0320398
APLP2 amyloid beta (A4) precursor-like protein 2 0.0318899
GK glycerol kinase 0.0314456
PTMA prothymosin, alpha 0.0311148
TNRC6B trinucleotide repeat containing 6B 0.0307537
SQSTM1 sequestosome 1 0.0307037
RAD51B RAD51 paralog B 0.0306825
AEBP2 AE binding protein 2 0.0305382
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.030448
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0295289
GPAM glycerol-3-phosphate acyltransferase, mitochondrial 0.0293777
ZFR zinc finger RNA binding protein 0.0291186
JMJD1C jumonji domain containing 1C 0.0288272
RACK1 receptor for activated C kinase 1 0.0288223
RPL30 ribosomal protein L30 0.0284752
EIF2S2 eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa 0.0284516
EIF5B eukaryotic translation initiation factor 5B 0.0277126
CLIC4 chloride intracellular channel 4 0.0276976
RPLP0 ribosomal protein, large, P0 0.027495
PTCHD4 patched domain containing 4 0.0274042
DNAJB1 DnaJ (Hsp40) homolog, subfamily B, member 1 0.0271893
CADM1 cell adhesion molecule 1 0.0271581
CSPP1 centrosome and spindle pole associated protein 1 0.0271554
SEPTIN9 septin 9 0.0271114
CELF1 CUGBP, Elav-like family member 1 0.0267001
LMCD1 LIM and cysteine-rich domains 1 0.0265494
RPL5 ribosomal protein L5 0.026421
KIF5B kinesin family member 5B 0.0263544
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0262641
SOD2 superoxide dismutase 2, mitochondrial 0.0262177
SDC4 syndecan 4 0.0261357
DIP2B DIP2 disco-interacting protein 2 homolog B (Drosophila) 0.0260753
TNFAIP3 tumor necrosis factor, alpha-induced protein 3 0.0256732
RPL26 ribosomal protein L26 0.0255235
CAPZB capping protein (actin filament) muscle Z-line, beta 0.0252034
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.0251486
ID2 inhibitor of DNA binding 2, dominant negative helix-loop-helix protein 0.0250347
JAK1 Janus kinase 1 0.0247321
RBBP4 retinoblastoma binding protein 4 0.0244638
MRTFA myocardin related transcription factor A 0.0242574
CCNY cyclin Y 0.0241801
RPL19 ribosomal protein L19 0.0240912
SLC23A1 solute carrier family 23 (ascorbic acid transporter), member 1 0.0237678
MAN1A1 mannosidase, alpha, class 1A, member 1 0.0236544
RALGAPA2 Ral GTPase activating protein, alpha subunit 2 (catalytic) 0.023355
BHLHE40 basic helix-loop-helix family, member e40 0.0228917
BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 0.0228109
PCBP2 poly(rC) binding protein 2 0.0227468
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0226533
PTP4A1 protein tyrosine phosphatase type IVA, member 1 0.0226501

decreased expression

Symbol Name Standardized Value
AKAP12 A kinase (PRKA) anchor protein 12 -0.188828
EHBP1 EH domain binding protein 1 -0.109743
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0932428
GMDS GDP-mannose 4,6-dehydratase -0.0810809
ASPH aspartate beta-hydroxylase -0.0658737
MAML2 mastermind-like 2 (Drosophila) -0.0632365
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.0616578
TIMP1 TIMP metallopeptidase inhibitor 1 -0.0601588
FRMD5 FERM domain containing 5 -0.0590453
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0453155
SPATS2L spermatogenesis associated, serine-rich 2-like -0.04
MT2A metallothionein 2A -0.0393297
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0391274
TM4SF1 transmembrane 4 L six family member 1 -0.032722
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0297485
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) -0.0294975
RASGRF2 Ras protein-specific guanine nucleotide-releasing factor 2 -0.0273664
FAT1 FAT atypical cadherin 1 -0.0268574
PTPRN2 protein tyrosine phosphatase, receptor type, N polypeptide 2 -0.0267737
ITGA1 integrin, alpha 1 -0.0244812
ITGA6 integrin, alpha 6 -0.0233743
MKLN1 muskelin 1, intracellular mediator containing kelch motifs -0.0225985
NPAS2 neuronal PAS domain protein 2 -0.0223781
RERE arginine-glutamic acid dipeptide (RE) repeats -0.021285
RAI14 retinoic acid induced 14 -0.0211118
ITGB5 integrin, beta 5 -0.0210567
ELL2 elongation factor, RNA polymerase II, 2 -0.0204216
SAMD4A sterile alpha motif domain containing 4A -0.020202
VCAN versican -0.0194453
FERMT1 fermitin family member 1 -0.0194084
RAB3B RAB3B, member RAS oncogene family -0.0193177
PRAG1 PEAK1 related, kinase-activating pseudokinase 1 -0.0189258
SIPA1L1 signal-induced proliferation-associated 1 like 1 -0.0189058
RNASET2 ribonuclease T2 -0.0184833
DTNA dystrobrevin, alpha -0.0183752
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) -0.0179033
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 -0.0178024
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0176771
MALT1 MALT1 paracaspase -0.0168317
ACTN1 actinin, alpha 1 -0.0166886
MAP4K3 mitogen-activated protein kinase kinase kinase kinase 3 -0.0163105
NHSL1 NHS-like 1 -0.0161579
STAU1 staufen double-stranded RNA binding protein 1 -0.0159983
STK17A serine/threonine kinase 17a -0.0159551
LARGE1 LARGE xylosyl- and glucuronyltransferase 1 -0.0154209
LAMB1 laminin, beta 1 -0.0153566
DOCK4 dedicator of cytokinesis 4 -0.0151224
NBAS neuroblastoma amplified sequence -0.015106
DSTN destrin (actin depolymerizing factor) -0.015071
SNX9 sorting nexin 9 -0.0149922
ESYT2 extended synaptotagmin-like protein 2 -0.0149718
CNKSR3 CNKSR family member 3 -0.0148228
DIDO1 death inducer-obliterator 1 -0.0147698
KIF1B kinesin family member 1B -0.014753
SEPTIN10 septin 10 -0.0147449
ADGRG6 adhesion G protein-coupled receptor G6 -0.0147059
TPD52 tumor protein D52 -0.0146429
AFF1 AF4/FMR2 family, member 1 -0.0145402
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 -0.0143372
BRIP1 BRCA1 interacting protein C-terminal helicase 1 -0.014245
ZBTB20 zinc finger and BTB domain containing 20 -0.0142289
MARCKS myristoylated alanine-rich protein kinase C substrate -0.0142095
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 -0.0142089
CYTH1 cytohesin 1 -0.0141729
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0141669
SUPT3H suppressor of Ty 3 homolog (S. cerevisiae) -0.0141334
CAPRIN2 caprin family member 2 -0.0140512
SH3RF1 SH3 domain containing ring finger 1 -0.0139475
PHLDB2 pleckstrin homology-like domain, family B, member 2 -0.0138263
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 -0.0137096
H1-0 H1.0 linker histone -0.0135825
STK39 serine threonine kinase 39 -0.0135455
RALGPS2 Ral GEF with PH domain and SH3 binding motif 2 -0.0134085
KIF26B kinesin family member 26B -0.0133344
ARHGAP21 Rho GTPase activating protein 21 -0.0132352
AHNAK AHNAK nucleoprotein -0.0132268
ATP1A4 ATPase, Na+/K+ transporting, alpha 4 polypeptide -0.0130961
PKP4 plakophilin 4 -0.0128494
ITCH itchy E3 ubiquitin protein ligase -0.012842
ZNF804A zinc finger protein 804A -0.0128353
HDAC4 histone deacetylase 4 -0.0126633
CNOT2 CCR4-NOT transcription complex, subunit 2 -0.0125206
SHB Src homology 2 domain containing adaptor protein B -0.0124916
CLASP1 cytoplasmic linker associated protein 1 -0.0122429
NUP58 nucleoporin 58 -0.0121983
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa -0.0121899
PATJ PATJ crumbs cell polarity complex component -0.012104
FNDC3A fibronectin type III domain containing 3A -0.0119013
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 -0.0118878
CAP1 CAP, adenylate cyclase-associated protein 1 (yeast) -0.0118072
IQSEC1 IQ motif and Sec7 domain 1 -0.0118054
TPM3 tropomyosin 3 -0.0116555
PMM2 phosphomannomutase 2 -0.0116301
MPZL2 myelin protein zero-like 2 -0.0116298
BRD2 bromodomain containing 2 -0.0115988
SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 -0.0115939
SEC31A SEC31 homolog A (S. cerevisiae) -0.0115742
FMNL2 formin-like 2 -0.0115253
LRBA LPS-responsive vesicle trafficking, beach and anchor containing -0.0115138
CLTC clathrin, heavy chain (Hc) -0.0114737