Entrectinib_MIA PaCa-2 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Entrectinib perturbation in MIA PaCa-2 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Entrectinib_MIA PaCa-2 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
TM4SF1 transmembrane 4 L six family member 1 0.141574
TXNRD1 thioredoxin reductase 1 0.139357
ERRFI1 ERBB receptor feedback inhibitor 1 0.131357
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.106504
SLC4A7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 0.0991114
VIM vimentin 0.084591
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0708888
RAI1 retinoic acid induced 1 0.0676877
CENPF centromere protein F, 350/400kDa 0.065828
ARHGAP5 Rho GTPase activating protein 5 0.064335
SLC38A2 solute carrier family 38, member 2 0.0635103
EZR ezrin 0.0594835
RTN4 reticulon 4 0.059259
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.058558
FTH1 ferritin, heavy polypeptide 1 0.0575234
MKI67 marker of proliferation Ki-67 0.0537571
JUN jun proto-oncogene 0.0510076
TMEM41B transmembrane protein 41B 0.0496283
TRIP12 thyroid hormone receptor interactor 12 0.0452822
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0434922
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 0.0415892
FMNL2 formin-like 2 0.0402824
USP34 ubiquitin specific peptidase 34 0.0400233
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0397243
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0395596
CSNK1A1 casein kinase 1, alpha 1 0.0394372
ZEB1 zinc finger E-box binding homeobox 1 0.0387588
ZFP36L1 ZFP36 ring finger protein-like 1 0.0374316
JMJD1C jumonji domain containing 1C 0.0363189
CAPRIN2 caprin family member 2 0.0358183
BIRC2 baculoviral IAP repeat containing 2 0.0352969
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 0.033418
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) 0.0333277
FLNB filamin B, beta 0.0331938
SPAG9 sperm associated antigen 9 0.0323994
EIF3A eukaryotic translation initiation factor 3, subunit A 0.0322183
CAPN2 calpain 2, (m/II) large subunit 0.0316758
SRRM2 serine/arginine repetitive matrix 2 0.0316112
EIF4H eukaryotic translation initiation factor 4H 0.0312359
PGK1 phosphoglycerate kinase 1 0.0308994
SLC20A1 solute carrier family 20 (phosphate transporter), member 1 0.0308023
PTP4A2 protein tyrosine phosphatase type IVA, member 2 0.0306862
BCAR3 breast cancer anti-estrogen resistance 3 0.030338
MT1X metallothionein 1X 0.0302721
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 0.0300438
PSD3 pleckstrin and Sec7 domain containing 3 0.0297228
EGR1 early growth response 1 0.0295926
KPNA4 karyopherin alpha 4 (importin alpha 3) 0.0293975
HSPA8 heat shock 70kDa protein 8 0.0292929
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0292784
WWTR1 WW domain containing transcription regulator 1 0.0288542
NAMPT nicotinamide phosphoribosyltransferase 0.0288141
MACF1 microtubule-actin crosslinking factor 1 0.0288053
SMC4 structural maintenance of chromosomes 4 0.0286622
RAB7A RAB7A, member RAS oncogene family 0.0275654
CKAP5 cytoskeleton associated protein 5 0.027342
UPP1 uridine phosphorylase 1 0.0272975
EEF2 eukaryotic translation elongation factor 2 0.0268719
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.0268382
VMP1 vacuole membrane protein 1 0.0268353
FNIP1 folliculin interacting protein 1 0.0266129
RBM25 RNA binding motif protein 25 0.0264219
RB1CC1 RB1-inducible coiled-coil 1 0.0260985
PTPN12 protein tyrosine phosphatase, non-receptor type 12 0.0258863
ITPR3 inositol 1,4,5-trisphosphate receptor, type 3 0.0257515
HPCAL1 hippocalcin-like 1 0.0256848
PRRC2C proline-rich coiled-coil 2C 0.0256368
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 0.0254974
GARS1 glycyl-tRNA synthetase 1 0.0254961
IL1RAPL1 interleukin 1 receptor accessory protein-like 1 0.0253322
ATP2B4 ATPase, Ca++ transporting, plasma membrane 4 0.0253237
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 0.0248944
SPRY4 sprouty homolog 4 (Drosophila) 0.0247737
ZMYND8 zinc finger, MYND-type containing 8 0.0245306
SPRED2 sprouty-related, EVH1 domain containing 2 0.0241916
MIS18BP1 MIS18 binding protein 1 0.0239838
PYGL phosphorylase, glycogen, liver 0.0239545
CLTC clathrin, heavy chain (Hc) 0.0238144
MYH9 myosin, heavy chain 9, non-muscle 0.0235834
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 0.0235163
PPIA peptidylprolyl isomerase A (cyclophilin A) 0.0231525
KLF6 Kruppel-like factor 6 0.0229912
EREG epiregulin 0.0229715
YBX3 Y box binding protein 3 0.0229032
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.0228585
CKAP2 cytoskeleton associated protein 2 0.0226812
ANLN anillin, actin binding protein 0.0225333
NUP58 nucleoporin 58 0.0224949
TPX2 TPX2, microtubule-associated 0.0221984
UBR4 ubiquitin protein ligase E3 component n-recognin 4 0.0220263
CEP170 centrosomal protein 170kDa 0.0219135
APP amyloid beta (A4) precursor protein 0.0215271
PLK2 polo-like kinase 2 0.0215271
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha 0.0214172
CSDE1 cold shock domain containing E1, RNA-binding 0.0212555
CDK19 cyclin-dependent kinase 19 0.0212514
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0211819
KIF14 kinesin family member 14 0.0210112
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 0.0209604
TRA2B transformer 2 beta homolog (Drosophila) 0.0209432

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.143103
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.104981
CADM2 cell adhesion molecule 2 -0.04454
DST dystonin -0.0430484
TXNIP thioredoxin interacting protein -0.0418933
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C -0.0385678
CALR calreticulin -0.0381901
TP63 tumor protein p63 -0.036812
RPLP1 ribosomal protein, large, P1 -0.0367681
PKM pyruvate kinase, muscle -0.0367599
ZDHHC14 zinc finger, DHHC-type containing 14 -0.0358535
WSB1 WD repeat and SOCS box containing 1 -0.0355516
TMSB10 thymosin beta 10 -0.0341993
DPYD dihydropyrimidine dehydrogenase -0.0323428
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0321327
CFAP299 cilia and flagella associated protein 299 -0.0302715
GOLGA4 golgin A4 -0.0296883
FTL ferritin, light polypeptide -0.0282066
RPS19 ribosomal protein S19 -0.0270365
HILPDA hypoxia inducible lipid droplet-associated -0.026604
SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 -0.0249358
GNPDA1 glucosamine-6-phosphate deaminase 1 -0.0248342
RPL23 ribosomal protein L23 -0.0246737
TIMP2 TIMP metallopeptidase inhibitor 2 -0.0246519
POTEF POTE ankyrin domain family, member F -0.0239352
EGFR epidermal growth factor receptor -0.0230944
PARP14 poly (ADP-ribose) polymerase family, member 14 -0.0222228
ENO2 enolase 2 (gamma, neuronal) -0.0219083
MT1E metallothionein 1E -0.0219082
IFITM1 interferon induced transmembrane protein 1 -0.0215207
PTMA prothymosin, alpha -0.0212015
RPL31 ribosomal protein L31 -0.0209388
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.0209313
EPHA4 EPH receptor A4 -0.0206982
AKAP9 A kinase (PRKA) anchor protein 9 -0.0206078
TNS3 tensin 3 -0.0202279
IFI6 interferon, alpha-inducible protein 6 -0.0194687
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 -0.0193536
RPS8 ribosomal protein S8 -0.0190452
RPS12 ribosomal protein S12 -0.0188042
TTC3 tetratricopeptide repeat domain 3 -0.0186883
RPS6 ribosomal protein S6 -0.0183964
DDX60L DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like -0.0183116
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.018232
PDIA3 protein disulfide isomerase family A, member 3 -0.0177737
FNDC3B fibronectin type III domain containing 3B -0.017643
RPL28 ribosomal protein L28 -0.0176059
WARS1 tryptophanyl-tRNA synthetase 1 -0.0173779
RPS25 ribosomal protein S25 -0.0170752
COL5A2 collagen, type V, alpha 2 -0.0169905
LDHA lactate dehydrogenase A -0.016927
RPS24 ribosomal protein S24 -0.0168906
RPS29 ribosomal protein S29 -0.0167783
MBD5 methyl-CpG binding domain protein 5 -0.0166351
MYOF myoferlin -0.0164568
RPL27A ribosomal protein L27a -0.0164104
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.016338
RPL37 ribosomal protein L37 -0.0160601
PRELID2 PRELI domain containing 2 -0.0160593
ASTN2 astrotactin 2 -0.0160124
RPL37A ribosomal protein L37a -0.0159496
RPS16 ribosomal protein S16 -0.0155274
UBR2 ubiquitin protein ligase E3 component n-recognin 2 -0.0155117
CUX1 cut-like homeobox 1 -0.0152273
RPS27 ribosomal protein S27 -0.0151039
SRP54 signal recognition particle 54kDa -0.014904
NDRG1 N-myc downstream regulated 1 -0.0148943
KDM2A lysine (K)-specific demethylase 2A -0.0148352
RPS17 ribosomal protein S17 -0.0148242
ZMIZ2 zinc finger, MIZ-type containing 2 -0.0146863
PDIA6 protein disulfide isomerase family A, member 6 -0.0146357
RPL39 ribosomal protein L39 -0.0143533
LPP LIM domain containing preferred translocation partner in lipoma -0.0139435
PLIN2 perilipin 2 -0.0138146
RPL11 ribosomal protein L11 -0.0137429
AEBP2 AE binding protein 2 -0.0136997
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa -0.0135704
NPAS2 neuronal PAS domain protein 2 -0.0135585
RPS10 ribosomal protein S10 -0.0135199
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive -0.0133031
TNFAIP2 tumor necrosis factor, alpha-induced protein 2 -0.013212
B2M beta-2-microglobulin -0.01302
SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 -0.0129687
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0129213
SOD2 superoxide dismutase 2, mitochondrial -0.0128948
PTPRJ protein tyrosine phosphatase, receptor type, J -0.0127903
HSPG2 heparan sulfate proteoglycan 2 -0.0127229
RPL35 ribosomal protein L35 -0.012672
KTN1 kinectin 1 (kinesin receptor) -0.0126344
HLA-A major histocompatibility complex, class I, A -0.0126036
TNRC6B trinucleotide repeat containing 6B -0.0125715
DDX60 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 -0.0124839
SEC22A SEC22 vesicle trafficking protein homolog A (S. cerevisiae) -0.0124007
TNFRSF6B tumor necrosis factor receptor superfamily, member 6b, decoy -0.0123191
TRIM56 tripartite motif containing 56 -0.0122138
DNAH14 dynein, axonemal, heavy chain 14 -0.0121593
RPS28 ribosomal protein S28 -0.0120942
PHC3 polyhomeotic homolog 3 (Drosophila) -0.012054
FTO fat mass and obesity associated -0.0120422
RPL38 ribosomal protein L38 -0.0120286