Epirubicin (hydrochloride)_C32 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Epirubicin (hydrochloride) perturbation in C32 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Epirubicin (hydrochloride)_C32 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.14366
VGF VGF nerve growth factor inducible 0.0948831
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 0.0654509
MT2A metallothionein 2A 0.0594277
AKAP12 A kinase (PRKA) anchor protein 12 0.0541307
FMNL2 formin-like 2 0.0482746
EGR1 early growth response 1 0.0466975
PTMA prothymosin, alpha 0.0427243
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0402258
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 0.037437
CABIN1 calcineurin binding protein 1 0.0372572
PTCHD4 patched domain containing 4 0.0367091
TIMP3 TIMP metallopeptidase inhibitor 3 0.0354216
RPS6 ribosomal protein S6 0.033362
RPS8 ribosomal protein S8 0.0317524
RPS19 ribosomal protein S19 0.0316579
BACE2 beta-site APP-cleaving enzyme 2 0.0315533
BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 0.030309
FTL ferritin, light polypeptide 0.029952
ESYT2 extended synaptotagmin-like protein 2 0.0297622
RPS12 ribosomal protein S12 0.0297092
GDF15 growth differentiation factor 15 0.0295797
RPL37A ribosomal protein L37a 0.0274782
FLNB filamin B, beta 0.0273925
UBR5 ubiquitin protein ligase E3 component n-recognin 5 0.0268356
POM121C POM121 transmembrane nucleoporin C 0.026632
RUNX1 runt-related transcription factor 1 0.0265207
RPL36 ribosomal protein L36 0.0264669
SLC5A3 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 0.0262134
HLA-B major histocompatibility complex, class I, B 0.0252871
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0243222
HSPG2 heparan sulfate proteoglycan 2 0.0239127
SND1 staphylococcal nuclease and tudor domain containing 1 0.0238663
BHLHE40 basic helix-loop-helix family, member e40 0.0234199
IFRD1 interferon-related developmental regulator 1 0.0229806
FBXO42 F-box protein 42 0.0226737
CD74 CD74 molecule, major histocompatibility complex, class II invariant chain 0.0222634
STXBP1 syntaxin binding protein 1 0.0222573
SRRM2 serine/arginine repetitive matrix 2 0.0222443
MRPS6 mitochondrial ribosomal protein S6 0.022211
PTPN14 protein tyrosine phosphatase, non-receptor type 14 0.0219332
SBF2 SET binding factor 2 0.0217106
PARVB parvin, beta 0.021575
HILPDA hypoxia inducible lipid droplet-associated 0.0213387
WNK1 WNK lysine deficient protein kinase 1 0.0213034
TNPO3 transportin 3 0.020972
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.020776
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0206993
RPLP1 ribosomal protein, large, P1 0.0204496
RPS29 ribosomal protein S29 0.0202911
PTK2 protein tyrosine kinase 2 0.0196606
UBA6 ubiquitin-like modifier activating enzyme 6 0.0195583
TPR translocated promoter region, nuclear basket protein 0.0194806
RPS3 ribosomal protein S3 0.0193957
CEBPD CCAAT/enhancer binding protein (C/EBP), delta 0.0193626
NBAS neuroblastoma amplified sequence 0.0189455
GALNT11 polypeptide N-acetylgalactosaminyltransferase 11 0.0189238
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.0188759
CTBP2 C-terminal binding protein 2 0.0188439
SOX5 SRY (sex determining region Y)-box 5 0.0188158
RPS2 ribosomal protein S2 0.0186993
BRWD1 bromodomain and WD repeat domain containing 1 0.0185157
NFE2L1 nuclear factor, erythroid 2-like 1 0.0183355
OSBPL8 oxysterol binding protein-like 8 0.0180839
RPS13 ribosomal protein S13 0.0179615
RPLP2 ribosomal protein, large, P2 0.0178003
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa 0.0177517
KTN1 kinectin 1 (kinesin receptor) 0.0176089
TRIO trio Rho guanine nucleotide exchange factor 0.017597
RPL12 ribosomal protein L12 0.0172099
RPL28 ribosomal protein L28 0.0171877
NCOR2 nuclear receptor corepressor 2 0.0168517
CDC42BPB CDC42 binding protein kinase beta (DMPK-like) 0.0167635
PPM1D protein phosphatase, Mg2+/Mn2+ dependent, 1D 0.0164398
ENO2 enolase 2 (gamma, neuronal) 0.0163492
RPL10A ribosomal protein L10a 0.0163092
ZC3H7A zinc finger CCCH-type containing 7A 0.0162624
RPL30 ribosomal protein L30 0.0162596
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0161917
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0159867
SSBP3 single stranded DNA binding protein 3 0.0158012
RPL26 ribosomal protein L26 0.0157397
RPS17 ribosomal protein S17 0.0157172
SERF2 small EDRK-rich factor 2 0.0157055
DDIT4 DNA-damage-inducible transcript 4 0.0154968
WSB1 WD repeat and SOCS box containing 1 0.0154931
PEA15 phosphoprotein enriched in astrocytes 15 0.0154872
OGA O-GlcNAcase 0.0152441
PRRC2C proline-rich coiled-coil 2C 0.0152376
ANKRD12 ankyrin repeat domain 12 0.0152268
RPL9 ribosomal protein L9 0.0151864
YBX3 Y box binding protein 3 0.0151235
ZFAND3 zinc finger, AN1-type domain 3 0.0150531
CTTNBP2 cortactin binding protein 2 0.0150038
CPED1 cadherin-like and PC-esterase domain containing 1 0.0149361
SRRM1 serine/arginine repetitive matrix 1 0.0148537
LRPPRC leucine-rich pentatricopeptide repeat containing 0.0148022
NAP1L1 nucleosome assembly protein 1-like 1 0.0147401
MEF2A myocyte enhancer factor 2A 0.0147175
IGFBP5 insulin-like growth factor binding protein 5 0.014643

decreased expression

Symbol Name Standardized Value
FN1 fibronectin 1 -0.491255
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.126416
GPC6 glypican 6 -0.121653
FMN1 formin 1 -0.113082
NLGN1 neuroligin 1 -0.110807
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 -0.104394
MDGA2 MAM domain containing glycosylphosphatidylinositol anchor 2 -0.102623
MACROD2 MACRO domain containing 2 -0.101993
TNNC1 troponin C type 1 (slow) -0.0904527
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0850539
DST dystonin -0.0782561
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0714114
NPC1 Niemann-Pick disease, type C1 -0.0713973
IFI16 interferon, gamma-inducible protein 16 -0.0700385
NAMPT nicotinamide phosphoribosyltransferase -0.0661854
PGK1 phosphoglycerate kinase 1 -0.0636177
DCT dopachrome tautomerase -0.0616541
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0606716
HMCN1 hemicentin 1 -0.0584681
EHBP1 EH domain binding protein 1 -0.0543104
PRELID2 PRELI domain containing 2 -0.0502122
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.0500634
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0494339
PCDH7 protocadherin 7 -0.048451
AHNAK AHNAK nucleoprotein -0.048374
ACSL3 acyl-CoA synthetase long-chain family member 3 -0.0437352
ANKRD28 ankyrin repeat domain 28 -0.0436122
NAV3 neuron navigator 3 -0.0429869
NPAS2 neuronal PAS domain protein 2 -0.0403069
EPS8 epidermal growth factor receptor pathway substrate 8 -0.0397191
LDHA lactate dehydrogenase A -0.0395938
ASPH aspartate beta-hydroxylase -0.0392871
HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 -0.0386458
APP amyloid beta (A4) precursor protein -0.0378934
OSMR oncostatin M receptor -0.0377311
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 -0.037176
IGFBP3 insulin-like growth factor binding protein 3 -0.0366911
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 -0.0366039
LRAT lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase) -0.0360529
TNFRSF19 tumor necrosis factor receptor superfamily, member 19 -0.0357877
WDPCP WD repeat containing planar cell polarity effector -0.033617
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 -0.0332452
SRPK2 SRSF protein kinase 2 -0.032399
CDK14 cyclin-dependent kinase 14 -0.0323423
NAV1 neuron navigator 1 -0.0322031
CPEB2 cytoplasmic polyadenylation element binding protein 2 -0.0318106
TANC1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 -0.0309731
DPYD dihydropyrimidine dehydrogenase -0.030896
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0307277
UHMK1 U2AF homology motif (UHM) kinase 1 -0.0302647
LAMB1 laminin, beta 1 -0.0302163
GPNMB glycoprotein (transmembrane) nmb -0.0298787
ARHGAP5 Rho GTPase activating protein 5 -0.0293146
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.0292548
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0292348
TNIK TRAF2 and NCK interacting kinase -0.0291193
OXR1 oxidation resistance 1 -0.0289754
SPTBN1 spectrin, beta, non-erythrocytic 1 -0.0289604
GSN gelsolin -0.0286972
PDIA3 protein disulfide isomerase family A, member 3 -0.0278763
PI15 peptidase inhibitor 15 -0.0277065
BRIP1 BRCA1 interacting protein C-terminal helicase 1 -0.027444
LSAMP limbic system-associated membrane protein -0.0273616
IGF1R insulin-like growth factor 1 receptor -0.0270333
SSH1 slingshot protein phosphatase 1 -0.0265991
SMYD3 SET and MYND domain containing 3 -0.0265438
TMEM178B transmembrane protein 178B -0.0264945
ENO1 enolase 1, (alpha) -0.0264905
LUC7L2 LUC7-like 2 (S. cerevisiae) -0.0263793
NRP2 neuropilin 2 -0.0260584
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0260041
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) -0.0260033
ZBTB20 zinc finger and BTB domain containing 20 -0.0259784
ZSWIM5 zinc finger, SWIM-type containing 5 -0.0257742
CANX calnexin -0.0253978
PKM pyruvate kinase, muscle -0.0250655
RAD21 RAD21 homolog (S. pombe) -0.0249569
PRKDC protein kinase, DNA-activated, catalytic polypeptide -0.0248046
CAPRIN1 cell cycle associated protein 1 -0.0247291
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 -0.0245895
ANXA2 annexin A2 -0.0245577
TSC22D1 TSC22 domain family, member 1 -0.0245484
UTRN utrophin -0.0242947
TULP4 tubby like protein 4 -0.0241936
RNF213 ring finger protein 213 -0.0241851
HBP1 HMG-box transcription factor 1 -0.0240514
CDH19 cadherin 19, type 2 -0.0236603
ACTN4 actinin, alpha 4 -0.0234482
DDX17 DEAD (Asp-Glu-Ala-Asp) box helicase 17 -0.0234361
LEF1 lymphoid enhancer-binding factor 1 -0.0230269
GMDS GDP-mannose 4,6-dehydratase -0.0229251
SYPL1 synaptophysin-like 1 -0.0228947
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 -0.0227836
PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 -0.0222162
EGLN3 egl-9 family hypoxia-inducible factor 3 -0.0216367
MOXD1 monooxygenase, DBH-like 1 -0.0215051
LIFR leukemia inhibitory factor receptor alpha -0.0214069
NAV2 neuron navigator 2 -0.0213618
IQGAP1 IQ motif containing GTPase activating protein 1 -0.0209801
MTPN myotrophin -0.020815