Epirubicin (hydrochloride)_CFPAC-1 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Epirubicin (hydrochloride) perturbation in CFPAC-1 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Epirubicin (hydrochloride)_CFPAC-1 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
SMAD3 SMAD family member 3 0.0908219
FNDC3B fibronectin type III domain containing 3B 0.0787288
TGM2 transglutaminase 2 0.0617694
ARHGAP26 Rho GTPase activating protein 26 0.0614064
FTH1 ferritin, heavy polypeptide 1 0.0547995
TNIP1 TNFAIP3 interacting protein 1 0.053549
PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 0.0501923
RAD51B RAD51 paralog B 0.0438341
VEGFA vascular endothelial growth factor A 0.0404235
HSPA8 heat shock 70kDa protein 8 0.0380658
APLP2 amyloid beta (A4) precursor-like protein 2 0.0379983
NDRG1 N-myc downstream regulated 1 0.0379458
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0356712
MYH9 myosin, heavy chain 9, non-muscle 0.0349511
ERRFI1 ERBB receptor feedback inhibitor 1 0.0344921
RPS2 ribosomal protein S2 0.0343831
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0343555
RPS6 ribosomal protein S6 0.0326459
FLNA filamin A, alpha 0.0317567
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0316783
DOCK5 dedicator of cytokinesis 5 0.0303185
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0296396
IFI27 interferon, alpha-inducible protein 27 0.0286827
EGR1 early growth response 1 0.028603
AGRN agrin 0.0284158
HSPG2 heparan sulfate proteoglycan 2 0.0275215
PTPN14 protein tyrosine phosphatase, non-receptor type 14 0.0272208
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0267856
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0264734
TPM3 tropomyosin 3 0.0259792
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0254996
CMIP c-Maf inducing protein 0.02526
PPARD peroxisome proliferator-activated receptor delta 0.025001
SLCO4A1 solute carrier organic anion transporter family, member 4A1 0.02441
NFE2L1 nuclear factor, erythroid 2-like 1 0.0242025
TOP2A topoisomerase (DNA) II alpha 170kDa 0.024091
FOSL2 FOS-like antigen 2 0.0238324
FAM107B family with sequence similarity 107, member B 0.0235966
TNFAIP2 tumor necrosis factor, alpha-induced protein 2 0.0232795
RPS12 ribosomal protein S12 0.0232472
SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 0.0232453
DUSP5 dual specificity phosphatase 5 0.023167
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0231217
MCL1 myeloid cell leukemia 1 0.022982
EPAS1 endothelial PAS domain protein 1 0.0229388
RPL4 ribosomal protein L4 0.0228797
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.022649
PGAM4 phosphoglycerate mutase family member 4 0.0226325
PKM pyruvate kinase, muscle 0.022457
TAPBP TAP binding protein (tapasin) 0.0222535
AXL AXL receptor tyrosine kinase 0.0215101
ZMIZ1 zinc finger, MIZ-type containing 1 0.0209964
APOL1 apolipoprotein L, 1 0.0209759
NAV2 neuron navigator 2 0.020969
TMEM51 transmembrane protein 51 0.020644
OAS3 2'-5'-oligoadenylate synthetase 3, 100kDa 0.020446
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0203398
TNFAIP3 tumor necrosis factor, alpha-induced protein 3 0.0201913
GRB10 growth factor receptor-bound protein 10 0.0201833
ANO6 anoctamin 6 0.0199544
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0199318
ECE1 endothelin converting enzyme 1 0.0195419
TUBA1B tubulin, alpha 1b 0.0192046
RPS17 ribosomal protein S17 0.0191694
LAMA5 laminin, alpha 5 0.0191514
ANKRD11 ankyrin repeat domain 11 0.0191104
CENPF centromere protein F, 350/400kDa 0.0189185
PHLDA1 pleckstrin homology-like domain, family A, member 1 0.0188738
MKI67 marker of proliferation Ki-67 0.0187514
KIAA1217 KIAA1217 0.018594
SRRM2 serine/arginine repetitive matrix 2 0.0183059
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.0181187
PLAT plasminogen activator, tissue 0.0180976
BCL9L B-cell CLL/lymphoma 9-like 0.0180914
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0179917
FOSL1 FOS-like antigen 1 0.0178698
EEF2 eukaryotic translation elongation factor 2 0.0176472
THSD4 thrombospondin, type I, domain containing 4 0.0173637
CCNL1 cyclin L1 0.0173537
DUOX2 dual oxidase 2 0.0171494
CFB complement factor B 0.0170765
LCN2 lipocalin 2 0.0169143
NCOR2 nuclear receptor corepressor 2 0.0168381
CD74 CD74 molecule, major histocompatibility complex, class II invariant chain 0.0167412
TNFRSF6B tumor necrosis factor receptor superfamily, member 6b, decoy 0.0166234
SDK1 sidekick cell adhesion molecule 1 0.0163802
SHB Src homology 2 domain containing adaptor protein B 0.0162573
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0161884
SAMD4A sterile alpha motif domain containing 4A 0.0161754
BABAM2 BRISC and BRCA1 A complex member 2 0.0161151
NOTCH2 notch 2 0.0158251
ZSWIM6 zinc finger, SWIM-type containing 6 0.015516
PCBP2 poly(rC) binding protein 2 0.0154715
EEF1G eukaryotic translation elongation factor 1 gamma 0.0152864
HPCAL1 hippocalcin-like 1 0.015254
SEPTIN9 septin 9 0.0151002
NFKBIZ nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta 0.015043
MKNK2 MAP kinase interacting serine/threonine kinase 2 0.0150345
ZNF395 zinc finger protein 395 0.0146186
ADAM28 ADAM metallopeptidase domain 28 0.0145707

decreased expression

Symbol Name Standardized Value
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.211175
TMSB10 thymosin beta 10 -0.138286
SYNE2 spectrin repeat containing, nuclear envelope 2 -0.124587
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.107645
PTMA prothymosin, alpha -0.105189
MT1X metallothionein 1X -0.0967752
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa -0.0950985
MT2A metallothionein 2A -0.0904382
NPEPPS aminopeptidase puromycin sensitive -0.0898186
LMO7 LIM domain 7 -0.0871356
MMP7 matrix metallopeptidase 7 -0.0819144
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0791244
PGK1 phosphoglycerate kinase 1 -0.0774319
TMSB4X thymosin beta 4, X-linked -0.0769866
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0749063
LAMB3 laminin, beta 3 -0.0745604
CD2AP CD2-associated protein -0.0728347
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0718336
WSB1 WD repeat and SOCS box containing 1 -0.0699166
SPAG9 sperm associated antigen 9 -0.0669381
EIF1 eukaryotic translation initiation factor 1 -0.0666234
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 -0.0631123
FUT8 fucosyltransferase 8 (alpha (1,6) fucosyltransferase) -0.0629704
CP ceruloplasmin (ferroxidase) -0.0618834
ARHGAP5 Rho GTPase activating protein 5 -0.0593667
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.058764
STRN3 striatin, calmodulin binding protein 3 -0.0587597
GFPT1 glutamine--fructose-6-phosphate transaminase 1 -0.0571128
AHNAK AHNAK nucleoprotein -0.0557936
EHBP1 EH domain binding protein 1 -0.0546401
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.053717
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0529166
SMURF1 SMAD specific E3 ubiquitin protein ligase 1 -0.0513552
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0509691
HLA-B major histocompatibility complex, class I, B -0.0506567
WIPF2 WAS/WASL interacting protein family, member 2 -0.0505523
AHNAK2 AHNAK nucleoprotein 2 -0.0503412
KDM5B lysine (K)-specific demethylase 5B -0.0501288
JMJD1C jumonji domain containing 1C -0.0501225
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide -0.0500486
RAB1A RAB1A, member RAS oncogene family -0.0500342
CXCL8 chemokine (C-X-C motif) ligand 8 -0.0498965
ACTG1 actin gamma 1 -0.0497939
RASAL2 RAS protein activator like 2 -0.0489018
RAB7A RAB7A, member RAS oncogene family -0.0488971
ERBIN erbb2 interacting protein -0.0482662
PICALM phosphatidylinositol binding clathrin assembly protein -0.0481603
FTL ferritin, light polypeptide -0.0463287
TSC22D2 TSC22 domain family, member 2 -0.046321
CANX calnexin -0.0461982
PATJ PATJ crumbs cell polarity complex component -0.0455838
ANXA2 annexin A2 -0.0443376
RBM39 RNA binding motif protein 39 -0.0439129
UBE2H ubiquitin-conjugating enzyme E2H -0.0438445
TPT1 tumor protein, translationally-controlled 1 -0.0437519
APP amyloid beta (A4) precursor protein -0.0430641
KMT2C lysine (K)-specific methyltransferase 2C -0.0415411
ITPRID2 ITPR interacting domain containing 2 -0.0412331
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 -0.0411511
ALCAM activated leukocyte cell adhesion molecule -0.0409882
MCU mitochondrial calcium uniporter -0.040793
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0401214
OGA O-GlcNAcase -0.039805
NT5C2 5'-nucleotidase, cytosolic II -0.0394249
KDM3A lysine (K)-specific demethylase 3A -0.0393537
DST dystonin -0.0385975
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) -0.0384392
ADAM9 ADAM metallopeptidase domain 9 -0.0384018
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive -0.0382656
PARD3 par-3 family cell polarity regulator -0.0381159
S100A6 S100 calcium binding protein A6 -0.0374412
GSK3B glycogen synthase kinase 3 beta -0.0372725
DSG2 desmoglein 2 -0.0369109
SLC25A36 solute carrier family 25 (pyrimidine nucleotide carrier), member 36 -0.0367388
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.0366548
TRIO trio Rho guanine nucleotide exchange factor -0.0365424
B2M beta-2-microglobulin -0.0365289
F3 coagulation factor III (thromboplastin, tissue factor) -0.0364307
MAP4K3 mitogen-activated protein kinase kinase kinase kinase 3 -0.0362235
MINDY2 MINDY lysine 48 deubiquitinase 2 -0.035854
SEC31A SEC31 homolog A (S. cerevisiae) -0.0358188
MEF2A myocyte enhancer factor 2A -0.0352724
PTTG1IP pituitary tumor-transforming 1 interacting protein -0.0352109
TMEM123 transmembrane protein 123 -0.0350483
LMAN1 lectin, mannose-binding, 1 -0.0347701
FBXO11 F-box protein 11 -0.0346136
TPM4 tropomyosin 4 -0.034436
RRBP1 ribosome binding protein 1 -0.034224
ABI1 abl-interactor 1 -0.0340984
RAPGEF2 Rap guanine nucleotide exchange factor (GEF) 2 -0.0332331
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0330446
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 -0.0329808
AFF4 AF4/FMR2 family, member 4 -0.032767
BICC1 BicC family RNA binding protein 1 -0.0324208
SPDYA speedy/RINGO cell cycle regulator family member A -0.0315588
FRMD5 FERM domain containing 5 -0.0311264
BZW1 basic leucine zipper and W2 domains 1 -0.0311213
AKAP9 A kinase (PRKA) anchor protein 9 -0.0310795
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.0309874
TJP1 tight junction protein 1 -0.0306947