Epirubicin (hydrochloride)_HT-29 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Epirubicin (hydrochloride) perturbation in HT-29 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Epirubicin (hydrochloride)_HT-29 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
FTH1 ferritin, heavy polypeptide 1 0.121866
RPS6 ribosomal protein S6 0.0895968
TXNRD1 thioredoxin reductase 1 0.0774388
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.070455
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0660308
FTL ferritin, light polypeptide 0.0615683
NAMPT nicotinamide phosphoribosyltransferase 0.0596719
RPL18 ribosomal protein L18 0.0575778
RPS2 ribosomal protein S2 0.054866
PRRC2C proline-rich coiled-coil 2C 0.0540378
PLAUR plasminogen activator, urokinase receptor 0.0532225
RPS3 ribosomal protein S3 0.0507711
GOLGA4 golgin A4 0.0497823
MKI67 marker of proliferation Ki-67 0.0497436
RPS19 ribosomal protein S19 0.0490931
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0477782
RPL4 ribosomal protein L4 0.0473514
CENPF centromere protein F, 350/400kDa 0.0418887
RPL21 ribosomal protein L21 0.0400425
RPS12 ribosomal protein S12 0.0398143
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0396096
EIF3A eukaryotic translation initiation factor 3, subunit A 0.0380726
SRRM1 serine/arginine repetitive matrix 1 0.0372905
YBX3 Y box binding protein 3 0.0349708
NAP1L1 nucleosome assembly protein 1-like 1 0.0340092
OGA O-GlcNAcase 0.0336153
CKAP5 cytoskeleton associated protein 5 0.0335617
RPL12 ribosomal protein L12 0.0327008
RPL32 ribosomal protein L32 0.0321542
KIF5B kinesin family member 5B 0.0315739
MXI1 MAX interactor 1, dimerization protein 0.0315721
RSRC2 arginine/serine-rich coiled-coil 2 0.0315557
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0311505
HMGB2 high mobility group box 2 0.0309124
CKAP2 cytoskeleton associated protein 2 0.0304552
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 0.0301197
RPLP2 ribosomal protein, large, P2 0.0300636
SERF2 small EDRK-rich factor 2 0.0297302
EZR ezrin 0.0292271
RPS16 ribosomal protein S16 0.0289605
PDIA4 protein disulfide isomerase family A, member 4 0.0280116
AP2B1 adaptor-related protein complex 2, beta 1 subunit 0.027558
RPL26 ribosomal protein L26 0.0274155
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 0.0272371
MKNK2 MAP kinase interacting serine/threonine kinase 2 0.0268502
EPRS1 glutamyl-prolyl-tRNA synthetase 1 0.026573
ZNF292 zinc finger protein 292 0.0262431
YBX1 Y box binding protein 1 0.0258074
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa 0.0243929
RPL17-C18ORF32 RPL17-C18orf32 readthrough 0.0243736
TPM3 tropomyosin 3 0.0242905
ZC3H15 zinc finger CCCH-type containing 15 0.0240661
HDLBP high density lipoprotein binding protein 0.0235606
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 0.0235351
NUSAP1 nucleolar and spindle associated protein 1 0.0233404
TPX2 TPX2, microtubule-associated 0.0231454
RAD21 RAD21 homolog (S. pombe) 0.0229003
CREBRF CREB3 regulatory factor 0.0227433
TPI1 triosephosphate isomerase 1 0.0227397
PAPOLA poly(A) polymerase alpha 0.0223857
GSTP1 glutathione S-transferase pi 1 0.0221463
H1-0 H1.0 linker histone 0.0220955
WWC1 WW and C2 domain containing 1 0.0218488
PPIG peptidylprolyl isomerase G (cyclophilin G) 0.0218027
ZC3H11A zinc finger CCCH-type containing 11A 0.0214366
PTPRF protein tyrosine phosphatase, receptor type, F 0.0210723
VAPA VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa 0.020919
NDUFB9 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa 0.0208712
BCLAF1 BCL2-associated transcription factor 1 0.0208051
NFKBIZ nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta 0.0207693
RACK1 receptor for activated C kinase 1 0.0206893
KMT2A lysine (K)-specific methyltransferase 2A 0.0205832
GARS1 glycyl-tRNA synthetase 1 0.0204928
UBE3A ubiquitin protein ligase E3A 0.0203224
KLF6 Kruppel-like factor 6 0.020238
KRT17 keratin 17, type I 0.0201679
NCKAP1 NCK-associated protein 1 0.0199409
ITPKC inositol-trisphosphate 3-kinase C 0.0199334
PARP4 poly (ADP-ribose) polymerase family, member 4 0.0199044
GPX4 glutathione peroxidase 4 0.019804
NCOR1 nuclear receptor corepressor 1 0.0194236
ANLN anillin, actin binding protein 0.0193847
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.019255
ATP5F1E ATP synthase F1 subunit epsilon 0.0192328
BHLHE40 basic helix-loop-helix family, member e40 0.0191096
ELF3 E74-like factor 3 (ets domain transcription factor, epithelial-specific ) 0.0190925
HSPA8 heat shock 70kDa protein 8 0.0190544
YME1L1 YME1-like 1 ATPase 0.0189903
SYAP1 synapse associated protein 1 0.0189744
SF1 splicing factor 1 0.0187569
EEF1G eukaryotic translation elongation factor 1 gamma 0.0187473
ANP32B acidic (leucine-rich) nuclear phosphoprotein 32 family, member B 0.0186942
ZFP91 ZFP91 zinc finger protein 0.0186649
ST14 suppression of tumorigenicity 14 (colon carcinoma) 0.0185836
TOP1 topoisomerase (DNA) I 0.0184044
RTN4 reticulon 4 0.0183297
PDZD8 PDZ domain containing 8 0.0183043
BOD1L1 biorientation of chromosomes in cell division 1-like 1 0.0181783
RPL7 ribosomal protein L7 0.0181458
RPL36 ribosomal protein L36 0.0181134

decreased expression

Symbol Name Standardized Value
MYH14 myosin, heavy chain 14, non-muscle -0.162068
NDRG1 N-myc downstream regulated 1 -0.150546
EXT1 exostosin glycosyltransferase 1 -0.135655
TPT1 tumor protein, translationally-controlled 1 -0.118333
INTS6 integrator complex subunit 6 -0.11744
GMDS GDP-mannose 4,6-dehydratase -0.0977182
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0862341
FNDC3B fibronectin type III domain containing 3B -0.0860985
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0760919
LOC102724023 ES1 protein homolog, mitochondrial -0.0747931
RPL35A ribosomal protein L35a -0.0679025
LAMA4 laminin, alpha 4 -0.0668489
PDE4D phosphodiesterase 4D, cAMP-specific -0.0657033
SLC45A4 solute carrier family 45, member 4 -0.063907
SMAD3 SMAD family member 3 -0.0614771
PTPRK protein tyrosine phosphatase, receptor type, K -0.0599317
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0594342
KRT20 keratin 20, type I -0.0591338
ZBTB20 zinc finger and BTB domain containing 20 -0.0577286
PKM pyruvate kinase, muscle -0.0573152
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0564304
CYP3A5 cytochrome P450, family 3, subfamily A, polypeptide 5 -0.0554451
PDIA3 protein disulfide isomerase family A, member 3 -0.054036
SAMD12 sterile alpha motif domain containing 12 -0.0535121
GCNT3 glucosaminyl (N-acetyl) transferase 3, mucin type -0.0528879
MCL1 myeloid cell leukemia 1 -0.0514507
SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 -0.0513907
LYZ lysozyme -0.0494603
SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) -0.048452
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0479698
CCSER1 coiled-coil serine-rich protein 1 -0.0473701
TRAPPC9 trafficking protein particle complex 9 -0.0468348
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 -0.0446119
SLC38A2 solute carrier family 38, member 2 -0.0441281
FRY furry homolog (Drosophila) -0.0440229
SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 -0.0432675
BAIAP2L1 BAI1-associated protein 2-like 1 -0.0410254
FOXO3 forkhead box O3 -0.0408736
POF1B premature ovarian failure, 1B -0.0405966
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 -0.0405617
PDLIM5 PDZ and LIM domain 5 -0.0405583
TRIB1 tribbles pseudokinase 1 -0.040272
VCL vinculin -0.0399584
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 -0.0396608
TNFRSF21 tumor necrosis factor receptor superfamily, member 21 -0.0395354
CTBP2 C-terminal binding protein 2 -0.0395351
DIAPH2 diaphanous-related formin 2 -0.0394433
PRKCA protein kinase C, alpha -0.038338
ACTG1 actin gamma 1 -0.0383066
RPL31 ribosomal protein L31 -0.0374158
MYO1E myosin IE -0.0372049
DGKH diacylglycerol kinase, eta -0.0371414
EXOC4 exocyst complex component 4 -0.0367124
ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 -0.0364957
KRT8 keratin 8, type II -0.0361275
ERN1 endoplasmic reticulum to nucleus signaling 1 -0.0360203
NF1 neurofibromin 1 -0.0356723
RNF213 ring finger protein 213 -0.0349711
AGR2 anterior gradient 2 -0.0348959
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide -0.0345192
ATXN1 ataxin 1 -0.0345131
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa -0.034312
NUP98 nucleoporin 98kDa -0.0342772
PICALM phosphatidylinositol binding clathrin assembly protein -0.0342039
TRPS1 trichorhinophalangeal syndrome I -0.0338256
ARHGAP26 Rho GTPase activating protein 26 -0.0335615
ACTN4 actinin, alpha 4 -0.0334799
MAGT1 magnesium transporter 1 -0.033479
GNGT1 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 -0.032833
LDHA lactate dehydrogenase A -0.0326248
EGR1 early growth response 1 -0.0321948
GFPT1 glutamine--fructose-6-phosphate transaminase 1 -0.0319922
RPS13 ribosomal protein S13 -0.0317272
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0316632
ADARB1 adenosine deaminase, RNA-specific, B1 -0.0315526
PTK2 protein tyrosine kinase 2 -0.0305296
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0305287
POTEF POTE ankyrin domain family, member F -0.0301803
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0301091
MAML2 mastermind-like 2 (Drosophila) -0.0296989
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 -0.029413
LPP LIM domain containing preferred translocation partner in lipoma -0.0293123
LARP1B La ribonucleoprotein domain family, member 1B -0.0292289
RCOR1 REST corepressor 1 -0.0285903
MMP7 matrix metallopeptidase 7 -0.0280549
VEGFA vascular endothelial growth factor A -0.0280372
FBXO11 F-box protein 11 -0.0280351
UBAP2 ubiquitin associated protein 2 -0.0280101
ARHGAP32 Rho GTPase activating protein 32 -0.0276441
CBL Cbl proto-oncogene, E3 ubiquitin protein ligase -0.0274749
NSMCE2 non-SMC element 2, MMS21 homolog (S. cerevisiae) -0.0274324
LRBA LPS-responsive vesicle trafficking, beach and anchor containing -0.0274023
TJP1 tight junction protein 1 -0.0272256
ANKRD11 ankyrin repeat domain 11 -0.027101
TMEM65 transmembrane protein 65 -0.0270634
MAML3 mastermind-like 3 (Drosophila) -0.0270321
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) -0.0270209
NAALADL2 N-acetylated alpha-linked acidic dipeptidase-like 2 -0.0269667
FOSB FBJ murine osteosarcoma viral oncogene homolog B -0.0264747
PRKN parkin RBR E3 ubiquitin protein ligase -0.0263529