Epirubicin (hydrochloride)_MIA PaCa-2 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Epirubicin (hydrochloride) perturbation in MIA PaCa-2 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Epirubicin (hydrochloride)_MIA PaCa-2 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.139075
RPS6 ribosomal protein S6 0.0896348
MT2A metallothionein 2A 0.0740842
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.0598233
HSPA8 heat shock 70kDa protein 8 0.056059
CENPF centromere protein F, 350/400kDa 0.0547372
RAD51B RAD51 paralog B 0.0512275
PTMA prothymosin, alpha 0.0512271
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0501091
TPI1 triosephosphate isomerase 1 0.0496702
EGR1 early growth response 1 0.0478602
PRRC2C proline-rich coiled-coil 2C 0.0451761
KMT2E lysine (K)-specific methyltransferase 2E 0.0437421
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0429626
RPS12 ribosomal protein S12 0.0420604
SRSF11 serine/arginine-rich splicing factor 11 0.0388336
RPS8 ribosomal protein S8 0.0385017
MKI67 marker of proliferation Ki-67 0.038303
ENO2 enolase 2 (gamma, neuronal) 0.0373445
RPS2 ribosomal protein S2 0.0362042
FTL ferritin, light polypeptide 0.0361518
FTH1 ferritin, heavy polypeptide 1 0.0360839
WNK1 WNK lysine deficient protein kinase 1 0.0351377
RPS19 ribosomal protein S19 0.0334607
RPS23 ribosomal protein S23 0.0334341
PLK2 polo-like kinase 2 0.0333588
BRD4 bromodomain containing 4 0.0331927
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 0.0328767
OSBPL8 oxysterol binding protein-like 8 0.0323267
HLA-A major histocompatibility complex, class I, A 0.0312968
RPS3 ribosomal protein S3 0.0307611
RPL18 ribosomal protein L18 0.0298448
RPL36 ribosomal protein L36 0.0293858
RPS17 ribosomal protein S17 0.0278811
SRPK2 SRSF protein kinase 2 0.0278438
ZC3HAV1 zinc finger CCCH-type, antiviral 1 0.02768
RCOR1 REST corepressor 1 0.02694
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0268725
SRRM2 serine/arginine repetitive matrix 2 0.0264531
UBE2C ubiquitin-conjugating enzyme E2C 0.0263508
SPIDR scaffolding protein involved in DNA repair 0.0260234
RACK1 receptor for activated C kinase 1 0.0256289
PGAM4 phosphoglycerate mutase family member 4 0.0255901
EEF1G eukaryotic translation elongation factor 1 gamma 0.0252292
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 0.024786
EIF4G1 eukaryotic translation initiation factor 4 gamma, 1 0.0246555
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0238323
TTC3 tetratricopeptide repeat domain 3 0.0236254
DHX40 DEAH (Asp-Glu-Ala-His) box polypeptide 40 0.0236146
ZFP36L1 ZFP36 ring finger protein-like 1 0.0234327
HDGF hepatoma-derived growth factor 0.0232153
RPL7A ribosomal protein L7a 0.0228027
NHSL1 NHS-like 1 0.0224831
EEF2 eukaryotic translation elongation factor 2 0.0221498
CCNL1 cyclin L1 0.0220651
RNF213 ring finger protein 213 0.0218913
TMF1 TATA element modulatory factor 1 0.0217274
IFI6 interferon, alpha-inducible protein 6 0.0216662
PRRC2B proline-rich coiled-coil 2B 0.0212136
DIAPH3 diaphanous-related formin 3 0.021135
UPP1 uridine phosphorylase 1 0.0209567
EIF1 eukaryotic translation initiation factor 1 0.020861
RPLP2 ribosomal protein, large, P2 0.0208247
RPS29 ribosomal protein S29 0.0207346
TNIP1 TNFAIP3 interacting protein 1 0.0204152
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0203368
RPL27 ribosomal protein L27 0.0201309
PFN1 profilin 1 0.0201169
ZCCHC7 zinc finger, CCHC domain containing 7 0.0196405
WDR27 WD repeat domain 27 0.0193224
ZFAND3 zinc finger, AN1-type domain 3 0.0191758
POLA1 polymerase (DNA directed), alpha 1, catalytic subunit 0.0190009
CCDC88A coiled-coil domain containing 88A 0.0188636
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0188465
TMCC1 transmembrane and coiled-coil domain family 1 0.018681
BAZ2A bromodomain adjacent to zinc finger domain, 2A 0.0185866
SIPA1L3 signal-induced proliferation-associated 1 like 3 0.0184013
RPL8 ribosomal protein L8 0.0183665
SRSF4 serine/arginine-rich splicing factor 4 0.0182053
RPL21 ribosomal protein L21 0.0180633
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0180057
STRBP spermatid perinuclear RNA binding protein 0.017954
BRCA1 breast cancer 1, early onset 0.0179246
B2M beta-2-microglobulin 0.0178176
RPS27 ribosomal protein S27 0.0178128
DENND2B DENN domain containing 2B 0.0177767
SSH2 slingshot protein phosphatase 2 0.0177314
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0176274
NXN nucleoredoxin 0.0176158
EXOC4 exocyst complex component 4 0.01752
ATXN2 ataxin 2 0.0175118
BHLHE40 basic helix-loop-helix family, member e40 0.0174382
SRRM1 serine/arginine repetitive matrix 1 0.0172629
CENPP centromere protein P 0.016925
EPB41L2 erythrocyte membrane protein band 4.1-like 2 0.0168793
RPL10A ribosomal protein L10a 0.0168405
ARID4B AT rich interactive domain 4B (RBP1-like) 0.01684
PNN pinin, desmosome associated protein 0.016813
PACS1 phosphofurin acidic cluster sorting protein 1 0.0168024
RPS14 ribosomal protein S14 0.0168013

decreased expression

Symbol Name Standardized Value
PSD3 pleckstrin and Sec7 domain containing 3 -0.198907
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.189921
VIM vimentin -0.18119
TMSB4X thymosin beta 4, X-linked -0.169397
DST dystonin -0.145986
CD44 CD44 molecule (Indian blood group) -0.121865
ARHGAP5 Rho GTPase activating protein 5 -0.11749
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.112414
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.10702
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 -0.0983536
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0951741
WARS1 tryptophanyl-tRNA synthetase 1 -0.0935078
AHNAK AHNAK nucleoprotein -0.0854406
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0853864
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0777794
GCNT2 glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group) -0.075159
TP63 tumor protein p63 -0.0748022
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0739546
TM4SF1 transmembrane 4 L six family member 1 -0.0734827
SLC4A7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 -0.0712478
SPAG9 sperm associated antigen 9 -0.0694642
NPAS2 neuronal PAS domain protein 2 -0.0691943
ERRFI1 ERBB receptor feedback inhibitor 1 -0.0671404
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.061777
EMP1 epithelial membrane protein 1 -0.0608328
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 -0.0585283
APP amyloid beta (A4) precursor protein -0.0568777
BIRC3 baculoviral IAP repeat containing 3 -0.0554569
EZR ezrin -0.055194
HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 -0.0539045
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.0527292
HSPD1 heat shock 60kDa protein 1 (chaperonin) -0.0523452
ANXA1 annexin A1 -0.051491
LOC112694756 uncharaterized LOC112694756 -0.0507581
TSC22D1 TSC22 domain family, member 1 -0.0505944
GSK3B glycogen synthase kinase 3 beta -0.0481171
PYGB phosphorylase, glycogen; brain -0.0466359
PGK1 phosphoglycerate kinase 1 -0.0465399
RAB27B RAB27B, member RAS oncogene family -0.0456459
CANX calnexin -0.0448092
KLF6 Kruppel-like factor 6 -0.0435249
ANXA2 annexin A2 -0.0425925
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 -0.0423863
TXNRD1 thioredoxin reductase 1 -0.0418425
TPT1 tumor protein, translationally-controlled 1 -0.0418098
GPAT3 glycerol-3-phosphate acyltransferase 3 -0.0417304
RTN4 reticulon 4 -0.0415818
ADAM10 ADAM metallopeptidase domain 10 -0.0411781
NIBAN2 niban apoptosis regulator 2 -0.0411042
POTEF POTE ankyrin domain family, member F -0.040271
CAPRIN2 caprin family member 2 -0.0400649
LDHA lactate dehydrogenase A -0.0395135
RPL35A ribosomal protein L35a -0.0392379
EREG epiregulin -0.0390878
NT5E 5'-nucleotidase, ecto (CD73) -0.0385536
GCLM glutamate-cysteine ligase, modifier subunit -0.0375624
RPS24 ribosomal protein S24 -0.0375604
HOOK2 hook microtubule-tethering protein 2 -0.0370484
UBE2E3 ubiquitin-conjugating enzyme E2E 3 -0.0363367
USP34 ubiquitin specific peptidase 34 -0.0359799
PTP4A2 protein tyrosine phosphatase type IVA, member 2 -0.0353748
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive -0.0348948
OGA O-GlcNAcase -0.0341482
KDM3A lysine (K)-specific demethylase 3A -0.0337781
PHLDB2 pleckstrin homology-like domain, family B, member 2 -0.0337161
TNFRSF10D tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain -0.0333577
ZMYND8 zinc finger, MYND-type containing 8 -0.0333321
DLG1 discs, large homolog 1 (Drosophila) -0.0332901
ACTG1 actin gamma 1 -0.0332595
SYNCRIP synaptotagmin binding, cytoplasmic RNA interacting protein -0.0325624
RUNX1 runt-related transcription factor 1 -0.0321443
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.031993
MATR3 matrin 3 -0.0316539
AHNAK2 AHNAK nucleoprotein 2 -0.0314115
LMAN1 lectin, mannose-binding, 1 -0.0313177
RAB1A RAB1A, member RAS oncogene family -0.0312596
RB1CC1 RB1-inducible coiled-coil 1 -0.0308623
ESYT2 extended synaptotagmin-like protein 2 -0.0307265
SBF2 SET binding factor 2 -0.0302827
RGS4 regulator of G-protein signaling 4 -0.0296804
MYOF myoferlin -0.0287048
EHBP1 EH domain binding protein 1 -0.0286389
TRIP12 thyroid hormone receptor interactor 12 -0.0286329
TNPO1 transportin 1 -0.0285448
IARS1 isoleucyl-tRNA synthetase 1 -0.0280108
PYGL phosphorylase, glycogen, liver -0.027804
DOCK11 dedicator of cytokinesis 11 -0.0277175
MINDY2 MINDY lysine 48 deubiquitinase 2 -0.0277054
ADAM17 ADAM metallopeptidase domain 17 -0.0273926
AGTPBP1 ATP/GTP binding protein 1 -0.027344
JMJD1C jumonji domain containing 1C -0.0271652
TPM4 tropomyosin 4 -0.0270533
BCAR3 breast cancer anti-estrogen resistance 3 -0.0270103
USP9X ubiquitin specific peptidase 9, X-linked -0.0269018
SMURF1 SMAD specific E3 ubiquitin protein ligase 1 -0.0266119
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.0263499
TOP1 topoisomerase (DNA) I -0.0260573
ATP2B4 ATPase, Ca++ transporting, plasma membrane 4 -0.0256949
ETNK1 ethanolamine kinase 1 -0.0256325
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) -0.0254731