Epirubicin (hydrochloride)_NCI-H2030 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Epirubicin (hydrochloride) perturbation in NCI-H2030 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Epirubicin (hydrochloride)_NCI-H2030 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
FTH1 ferritin, heavy polypeptide 1 0.0972769
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0819662
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0811538
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0453956
MKI67 marker of proliferation Ki-67 0.0395983
RPL4 ribosomal protein L4 0.0286674
CENPF centromere protein F, 350/400kDa 0.0285944
TUBA1B tubulin, alpha 1b 0.0270086
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 0.0247883
YBX1 Y box binding protein 1 0.0222595
UBE2C ubiquitin-conjugating enzyme E2C 0.0208318
FGB fibrinogen beta chain 0.0192944
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 0.0189223
ANLN anillin, actin binding protein 0.0187337
RPS12 ribosomal protein S12 0.0185179
AP2B1 adaptor-related protein complex 2, beta 1 subunit 0.017846
NUSAP1 nucleolar and spindle associated protein 1 0.0175775
TPX2 TPX2, microtubule-associated 0.0173804
DLGAP5 discs, large (Drosophila) homolog-associated protein 5 0.0169762
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.0169458
TUBB tubulin, beta class I 0.0166163
KNL1 kinetochore scaffold 1 0.0165649
TPM3 tropomyosin 3 0.0156323
RPS2 ribosomal protein S2 0.0147639
TPI1 triosephosphate isomerase 1 0.0141265
CENPE centromere protein E, 312kDa 0.0139429
PFN1 profilin 1 0.0133825
EEF1G eukaryotic translation elongation factor 1 gamma 0.013224
HMGB2 high mobility group box 2 0.0131194
HMGB1 high mobility group box 1 0.0130855
RFWD3 ring finger and WD repeat domain 3 0.0127495
HADHA hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit 0.0124328
NQO1 NAD(P)H dehydrogenase, quinone 1 0.0119589
NCAPD2 non-SMC condensin I complex, subunit D2 0.011787
GSTP1 glutathione S-transferase pi 1 0.0116412
PGAM4 phosphoglycerate mutase family member 4 0.0116002
KLF6 Kruppel-like factor 6 0.0113176
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0112822
EPB41L2 erythrocyte membrane protein band 4.1-like 2 0.0112231
AURKA aurora kinase A 0.0111586
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0109813
THBS1 thrombospondin 1 0.0108927
SGO2 shugoshin 2 0.0108383
ANP32E acidic (leucine-rich) nuclear phosphoprotein 32 family, member E 0.0108367
RPL18 ribosomal protein L18 0.0108016
NAMPT nicotinamide phosphoribosyltransferase 0.0107175
TAGLN2 transgelin 2 0.0106735
BUB1 BUB1 mitotic checkpoint serine/threonine kinase 0.0104483
SERF2 small EDRK-rich factor 2 0.0100772
DNMT1 DNA (cytosine-5-)-methyltransferase 1 0.010016
PRC1 protein regulator of cytokinesis 1 0.00999811
HSPA8 heat shock 70kDa protein 8 0.0099636
GTSE1 G-2 and S-phase expressed 1 0.00990071
KIF23 kinesin family member 23 0.00975344
RPS3 ribosomal protein S3 0.00973612
PRRC2A proline-rich coiled-coil 2A 0.0096643
PA2G4 proliferation-associated 2G4, 38kDa 0.00958059
CLU clusterin 0.0091984
CKAP2L cytoskeleton associated protein 2-like 0.00919717
EIF4H eukaryotic translation initiation factor 4H 0.0091712
STMN1 stathmin 1 0.00900943
RACK1 receptor for activated C kinase 1 0.00899576
CCT5 chaperonin containing TCP1, subunit 5 (epsilon) 0.00898301
PSME2 proteasome (prosome, macropain) activator subunit 2 (PA28 beta) 0.00896545
PCBP2 poly(rC) binding protein 2 0.00874935
NDC80 NDC80 kinetochore complex component 0.00855514
CMC2 C-x(9)-C motif containing 2 0.00854927
CLSPN claspin 0.00852996
ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) 0.00848789
MMS22L MMS22-like, DNA repair protein 0.00846538
TMA7 translation machinery associated 7 homolog (S. cerevisiae) 0.00845649
KIF20A kinesin family member 20A 0.00836795
WBP11 WW domain binding protein 11 0.00827034
CENPU centromere protein U 0.00824565
KIF11 kinesin family member 11 0.00822729
RANBP1 RAN binding protein 1 0.00799693
FGA fibrinogen alpha chain 0.00791049
LMNA lamin A/C 0.00780163
KPNA2 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) 0.00772203
NFE2L1 nuclear factor, erythroid 2-like 1 0.00771279
STIL SCL/TAL1 interrupting locus 0.00766093
NARS1 asparaginyl-tRNA synthetase 1 0.00751798
PTTG1 pituitary tumor-transforming 1 0.00751482
KIF4A kinesin family member 4A 0.0074882
GPX4 glutathione peroxidase 4 0.00745941
AXL AXL receptor tyrosine kinase 0.00742722
ANKZF1 ankyrin repeat and zinc finger domain containing 1 0.00740738
DIAPH3 diaphanous-related formin 3 0.0073814
GANAB glucosidase, alpha; neutral AB 0.00738129
TUBG1 tubulin, gamma 1 0.00737002
KDELR1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 0.00728154
KIAA0586 KIAA0586 0.00720435
CDKN3 cyclin-dependent kinase inhibitor 3 0.00718934
CDK1 cyclin-dependent kinase 1 0.00710384
KIFC1 kinesin family member C1 0.0070708
HMMR hyaluronan-mediated motility receptor (RHAMM) 0.00702684
PER1 period circadian clock 1 0.00690835
APRT adenine phosphoribosyltransferase 0.0069021
BUB1B BUB1 mitotic checkpoint serine/threonine kinase B 0.00684438
EXO1 exonuclease 1 0.00682284

decreased expression

Symbol Name Standardized Value
MT2A metallothionein 2A -0.255255
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) -0.20445
PDE4D phosphodiesterase 4D, cAMP-specific -0.168938
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.157148
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0944909
THSD4 thrombospondin, type I, domain containing 4 -0.0866761
DOCK4 dedicator of cytokinesis 4 -0.0854803
SAMD4A sterile alpha motif domain containing 4A -0.0828789
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0823606
FNDC3B fibronectin type III domain containing 3B -0.0817535
ACTG1 actin gamma 1 -0.0716445
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive -0.0695215
PM20D1 peptidase M20 domain containing 1 -0.0690044
GRAMD1B GRAM domain containing 1B -0.0643748
POTEF POTE ankyrin domain family, member F -0.0639208
ZFAND3 zinc finger, AN1-type domain 3 -0.0607989
CMIP c-Maf inducing protein -0.0602265
FMNL2 formin-like 2 -0.0586525
EIF1 eukaryotic translation initiation factor 1 -0.0570779
ERBIN erbb2 interacting protein -0.056854
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 -0.056045
IGFBP3 insulin-like growth factor binding protein 3 -0.05589
SVIL supervillin -0.0555235
LPP LIM domain containing preferred translocation partner in lipoma -0.0554992
TRIO trio Rho guanine nucleotide exchange factor -0.0533711
IER3 immediate early response 3 -0.0522792
MCL1 myeloid cell leukemia 1 -0.0518327
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0507653
COPA coatomer protein complex, subunit alpha -0.0502784
UBASH3B ubiquitin associated and SH3 domain containing B -0.0489246
LDHA lactate dehydrogenase A -0.0486162
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) -0.0485368
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 -0.0480559
ANKRD11 ankyrin repeat domain 11 -0.0470042
USP34 ubiquitin specific peptidase 34 -0.0469709
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0469592
WAC WW domain containing adaptor with coiled-coil -0.0469142
PARD3 par-3 family cell polarity regulator -0.0459917
DOCK5 dedicator of cytokinesis 5 -0.0451209
RBM39 RNA binding motif protein 39 -0.0444276
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0442228
RICTOR RPTOR independent companion of MTOR, complex 2 -0.0433599
RPL35A ribosomal protein L35a -0.0425493
PDLIM5 PDZ and LIM domain 5 -0.0425035
S100A6 S100 calcium binding protein A6 -0.0420174
DENND4A DENN/MADD domain containing 4A -0.0419051
RPL19 ribosomal protein L19 -0.0417346
KTN1 kinectin 1 (kinesin receptor) -0.04161
BIRC6 baculoviral IAP repeat containing 6 -0.0404031
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) -0.0402646
PYGL phosphorylase, glycogen, liver -0.0391362
ELL2 elongation factor, RNA polymerase II, 2 -0.0389842
TMSB10 thymosin beta 10 -0.0387701
PUM2 pumilio RNA-binding family member 2 -0.0372481
FTL ferritin, light polypeptide -0.0371356
FBXO11 F-box protein 11 -0.0370991
EGFR epidermal growth factor receptor -0.0370608
MYOF myoferlin -0.0368372
RPL31 ribosomal protein L31 -0.0365923
MACF1 microtubule-actin crosslinking factor 1 -0.0365859
GOLGA4 golgin A4 -0.0360317
FLNB filamin B, beta -0.0356127
MKLN1 muskelin 1, intracellular mediator containing kelch motifs -0.0354954
PTK2 protein tyrosine kinase 2 -0.0353772
NDRG1 N-myc downstream regulated 1 -0.0353392
MARK3 MAP/microtubule affinity-regulating kinase 3 -0.0353017
AKAP13 A kinase (PRKA) anchor protein 13 -0.0352197
RPLP1 ribosomal protein, large, P1 -0.0352175
RAB1A RAB1A, member RAS oncogene family -0.0342337
ARHGAP26 Rho GTPase activating protein 26 -0.0341689
SHANK2 SH3 and multiple ankyrin repeat domains 2 -0.0338867
TPT1 tumor protein, translationally-controlled 1 -0.0336291
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 -0.0335033
GLG1 golgi glycoprotein 1 -0.0333613
VIM vimentin -0.0333394
HLA-B major histocompatibility complex, class I, B -0.033231
DST dystonin -0.0328444
UBR5 ubiquitin protein ligase E3 component n-recognin 5 -0.0327069
PTPRM protein tyrosine phosphatase, receptor type, M -0.0325388
TPM4 tropomyosin 4 -0.0321253
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 -0.0318858
VPS13B vacuolar protein sorting 13 homolog B (yeast) -0.0318811
EXT1 exostosin glycosyltransferase 1 -0.0318699
JMJD1C jumonji domain containing 1C -0.0316134
RPS8 ribosomal protein S8 -0.031504
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0313606
RPS25 ribosomal protein S25 -0.0313106
SMOC1 SPARC related modular calcium binding 1 -0.0312451
SEC31A SEC31 homolog A (S. cerevisiae) -0.0304428
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase -0.0302444
IGF2 insulin-like growth factor 2 -0.0301536
S100A10 S100 calcium binding protein A10 -0.0299865
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0298376
RERE arginine-glutamic acid dipeptide (RE) repeats -0.0297979
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.0296619
BRD2 bromodomain containing 2 -0.0293556
RPL23 ribosomal protein L23 -0.0292611
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0292357
GLIS3 GLIS family zinc finger 3 -0.0291543
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase -0.0289089