Epirubicin (hydrochloride)_NCI-H2347 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Epirubicin (hydrochloride) perturbation in NCI-H2347 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Epirubicin (hydrochloride)_NCI-H2347 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.145447
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.117124
BHLHE40 basic helix-loop-helix family, member e40 0.112518
RPS3 ribosomal protein S3 0.0619007
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0591663
RPS6 ribosomal protein S6 0.0540544
NAMPT nicotinamide phosphoribosyltransferase 0.0522283
TOP2A topoisomerase (DNA) II alpha 170kDa 0.049406
FAM13A family with sequence similarity 13, member A 0.0486388
HMGB2 high mobility group box 2 0.0477811
RPS2 ribosomal protein S2 0.0471189
ERRFI1 ERBB receptor feedback inhibitor 1 0.0457165
HSPA8 heat shock 70kDa protein 8 0.044081
MT2A metallothionein 2A 0.0432545
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0400227
ZNF292 zinc finger protein 292 0.0373821
DDIT4 DNA-damage-inducible transcript 4 0.034415
ELL2 elongation factor, RNA polymerase II, 2 0.0339426
RPL4 ribosomal protein L4 0.0337497
ASPH aspartate beta-hydroxylase 0.0335413
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0331583
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 0.0329199
G2E3 G2/M-phase specific E3 ubiquitin protein ligase 0.0327678
RACK1 receptor for activated C kinase 1 0.0318857
ANLN anillin, actin binding protein 0.03077
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.0305609
USP3 ubiquitin specific peptidase 3 0.0299242
RNF145 ring finger protein 145 0.0297184
EEF1G eukaryotic translation elongation factor 1 gamma 0.029658
FTH1 ferritin, heavy polypeptide 1 0.0288467
MSMO1 methylsterol monooxygenase 1 0.0284587
NUP58 nucleoporin 58 0.0276765
PAPOLA poly(A) polymerase alpha 0.0272229
PABPC1 poly(A) binding protein, cytoplasmic 1 0.026657
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 0.026101
RPS8 ribosomal protein S8 0.0260022
QKI QKI, KH domain containing, RNA binding 0.0257103
LAMB3 laminin, beta 3 0.0253826
AREG amphiregulin 0.0249045
RPL13A ribosomal protein L13a 0.0246509
TFG TRK-fused gene 0.0246239
RPS12 ribosomal protein S12 0.0243029
UBE2C ubiquitin-conjugating enzyme E2C 0.0237832
HNRNPDL heterogeneous nuclear ribonucleoprotein D-like 0.0234535
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0233643
PNISR PNN-interacting serine/arginine-rich protein 0.0231853
TPX2 TPX2, microtubule-associated 0.0228427
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.022715
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0223604
SEMA7A semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group) 0.02229
FTL ferritin, light polypeptide 0.0222629
GARS1 glycyl-tRNA synthetase 1 0.0222259
RLF rearranged L-myc fusion 0.0217547
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A 0.0216264
RPL21 ribosomal protein L21 0.0216064
MARCHF6 membrane associated ring-CH-type finger 6 0.0214551
TNIP1 TNFAIP3 interacting protein 1 0.0213333
H1-4 H1.4 linker histone, cluster member 0.0211463
GPX4 glutathione peroxidase 4 0.0210943
TMA7 translation machinery associated 7 homolog (S. cerevisiae) 0.0209324
NAP1L1 nucleosome assembly protein 1-like 1 0.0208476
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 0.0203116
WBP11 WW domain binding protein 11 0.0200643
EIF4H eukaryotic translation initiation factor 4H 0.0198939
PGAM4 phosphoglycerate mutase family member 4 0.0195711
YBX3 Y box binding protein 3 0.0194939
RYBP RING1 and YY1 binding protein 0.0191647
EZR ezrin 0.018875
MAP4K5 mitogen-activated protein kinase kinase kinase kinase 5 0.0188446
CKAP5 cytoskeleton associated protein 5 0.0186528
EGR1 early growth response 1 0.0185655
FOSL1 FOS-like antigen 1 0.0182265
KDM3A lysine (K)-specific demethylase 3A 0.0181069
UBA6 ubiquitin-like modifier activating enzyme 6 0.0179053
MKI67 marker of proliferation Ki-67 0.0178852
RIPK2 receptor-interacting serine-threonine kinase 2 0.0177819
FAM162A family with sequence similarity 162, member A 0.0174417
RPL28 ribosomal protein L28 0.0173644
YBX1 Y box binding protein 1 0.0171821
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 0.0171776
CENPE centromere protein E, 312kDa 0.0171244
CLIP4 CAP-GLY domain containing linker protein family, member 4 0.0166822
RYK receptor-like tyrosine kinase 0.0163905
PTTG1 pituitary tumor-transforming 1 0.016288
NDRG1 N-myc downstream regulated 1 0.0161623
DLGAP5 discs, large (Drosophila) homolog-associated protein 5 0.0161448
TOP2B topoisomerase (DNA) II beta 180kDa 0.0161435
AHDC1 AT hook, DNA binding motif, containing 1 0.0161389
FBXO33 F-box protein 33 0.0160519
TUBA1B tubulin, alpha 1b 0.0160411
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0157831
PNN pinin, desmosome associated protein 0.0157684
BRD2 bromodomain containing 2 0.0155745
RPS27 ribosomal protein S27 0.0155192
MIER1 mesoderm induction early response 1, transcriptional regulator 0.0155165
NFKBIZ nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta 0.0155144
LUC7L3 LUC7-like 3 (S. cerevisiae) 0.0153315
SUCO SUN domain containing ossification factor 0.0153052
RPL37A ribosomal protein L37a 0.0151317
MXD1 MAX dimerization protein 1 0.0149861

decreased expression

Symbol Name Standardized Value
POTEF POTE ankyrin domain family, member F -0.23183
LPP LIM domain containing preferred translocation partner in lipoma -0.147956
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.134756
IFI27 interferon, alpha-inducible protein 27 -0.134001
TMSB10 thymosin beta 10 -0.129785
FN1 fibronectin 1 -0.112076
EXT1 exostosin glycosyltransferase 1 -0.111087
ERBIN erbb2 interacting protein -0.101809
FBXO32 F-box protein 32 -0.097251
LIMCH1 LIM and calponin homology domains 1 -0.093272
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.085433
SAMD4A sterile alpha motif domain containing 4A -0.0824011
ACTG1 actin gamma 1 -0.0801584
IFI16 interferon, gamma-inducible protein 16 -0.0750007
KRT7 keratin 7, type II -0.0734024
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0732015
S100A6 S100 calcium binding protein A6 -0.0731952
TPM4 tropomyosin 4 -0.0706312
RPL35A ribosomal protein L35a -0.0687561
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0682814
SMURF1 SMAD specific E3 ubiquitin protein ligase 1 -0.0664397
UBC ubiquitin C -0.0663476
SOX4 SRY (sex determining region Y)-box 4 -0.0663143
CCND1 cyclin D1 -0.0616861
GRB10 growth factor receptor-bound protein 10 -0.06127
IFI6 interferon, alpha-inducible protein 6 -0.0609969
MYO6 myosin VI -0.058865
UBE2H ubiquitin-conjugating enzyme E2H -0.0584076
MAP1B microtubule-associated protein 1B -0.0577328
RALGPS2 Ral GEF with PH domain and SH3 binding motif 2 -0.0562735
CD2AP CD2-associated protein -0.0561758
EFNA5 ephrin-A5 -0.0558541
PARP14 poly (ADP-ribose) polymerase family, member 14 -0.0552691
MACC1 metastasis associated in colon cancer 1 -0.0552447
F3 coagulation factor III (thromboplastin, tissue factor) -0.05311
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.0529284
ZBTB20 zinc finger and BTB domain containing 20 -0.0528016
SEC31A SEC31 homolog A (S. cerevisiae) -0.051982
RNF213 ring finger protein 213 -0.0518895
IGFBP3 insulin-like growth factor binding protein 3 -0.0512441
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0507112
TMSB4X thymosin beta 4, X-linked -0.0503633
ARHGAP5 Rho GTPase activating protein 5 -0.0502367
MX2 MX dynamin-like GTPase 2 -0.0497047
LMO7 LIM domain 7 -0.0491224
TMEM165 transmembrane protein 165 -0.0483283
GOLGB1 golgin B1 -0.044768
MYO1E myosin IE -0.0439653
ALCAM activated leukocyte cell adhesion molecule -0.0438826
APLP2 amyloid beta (A4) precursor-like protein 2 -0.0435113
AKAP13 A kinase (PRKA) anchor protein 13 -0.0434819
RAB7A RAB7A, member RAS oncogene family -0.043185
DDX60 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 -0.0429938
KMT2C lysine (K)-specific methyltransferase 2C -0.041367
CSNK1A1 casein kinase 1, alpha 1 -0.041144
OCLN occludin -0.0411317
VCL vinculin -0.0409991
ETV6 ets variant 6 -0.0406277
MAP3K13 mitogen-activated protein kinase kinase kinase 13 -0.0399207
HLA-B major histocompatibility complex, class I, B -0.0398005
MAML2 mastermind-like 2 (Drosophila) -0.0395552
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 -0.0394231
LGALS3 lectin, galactoside-binding, soluble, 3 -0.0393837
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 -0.0392028
AKAP9 A kinase (PRKA) anchor protein 9 -0.0386963
PTMA prothymosin, alpha -0.0384554
ARHGEF3 Rho guanine nucleotide exchange factor (GEF) 3 -0.0378856
RAB11FIP1 RAB11 family interacting protein 1 (class I) -0.0377398
KRT8 keratin 8, type II -0.0376033
NF1 neurofibromin 1 -0.0374384
RPL23 ribosomal protein L23 -0.037334
KDM2A lysine (K)-specific demethylase 2A -0.0372348
PGBD5 piggyBac transposable element derived 5 -0.0371837
ARHGAP20 Rho GTPase activating protein 20 -0.0369555
PLSCR1 phospholipid scramblase 1 -0.0367914
PTK2 protein tyrosine kinase 2 -0.0365678
MACF1 microtubule-actin crosslinking factor 1 -0.0363705
SVIL supervillin -0.0361614
ANKRD17 ankyrin repeat domain 17 -0.0360472
AHNAK AHNAK nucleoprotein -0.035899
MICAL3 microtubule associated monooxygenase, calponin and LIM domain containing 3 -0.0358887
MX1 MX dynamin-like GTPase 1 -0.0356143
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 -0.0354508
HSPB1 heat shock 27kDa protein 1 -0.0352599
PDLIM5 PDZ and LIM domain 5 -0.0351612
RALA v-ral simian leukemia viral oncogene homolog A (ras related) -0.0350089
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) -0.0350056
MCU mitochondrial calcium uniporter -0.0348154
FBXO34 F-box protein 34 -0.0346812
VEGFA vascular endothelial growth factor A -0.0345665
WSB1 WD repeat and SOCS box containing 1 -0.0338911
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa -0.0336728
PPP2R3A protein phosphatase 2, regulatory subunit B'', alpha -0.0334398
ARF4 ADP-ribosylation factor 4 -0.032593
MDK midkine (neurite growth-promoting factor 2) -0.0323558
RAI14 retinoic acid induced 14 -0.0322746
EDIL3 EGF-like repeats and discoidin I-like domains 3 -0.0322331
ITCH itchy E3 ubiquitin protein ligase -0.0321477
TRIO trio Rho guanine nucleotide exchange factor -0.0321184
CTSB cathepsin B -0.0318247