Epirubicin (hydrochloride)_NCI-H460 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Epirubicin (hydrochloride) perturbation in NCI-H460 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Epirubicin (hydrochloride)_NCI-H460 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 0.104056
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa 0.0781131
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 0.0507693
ARID4B AT rich interactive domain 4B (RBP1-like) 0.0443765
RPS6 ribosomal protein S6 0.0427355
NAP1L1 nucleosome assembly protein 1-like 1 0.0378545
RPS12 ribosomal protein S12 0.0365883
PCBP2 poly(rC) binding protein 2 0.0297962
TMSB10 thymosin beta 10 0.0295409
B2M beta-2-microglobulin 0.0293706
KDM6A lysine (K)-specific demethylase 6A 0.0292456
FTL ferritin, light polypeptide 0.0290945
GPHN gephyrin 0.0289011
HLA-A major histocompatibility complex, class I, A 0.0264799
RPL37A ribosomal protein L37a 0.026478
RPS19 ribosomal protein S19 0.0257412
FLNA filamin A, alpha 0.0247545
PRPF40A PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) 0.0242053
GNAS GNAS complex locus 0.0239883
PTPRG protein tyrosine phosphatase, receptor type, G 0.0239102
EIF4A1 eukaryotic translation initiation factor 4A1 0.023198
REV3L REV3-like, polymerase (DNA directed), zeta, catalytic subunit 0.0230025
TPI1 triosephosphate isomerase 1 0.0227668
SRPK2 SRSF protein kinase 2 0.0226726
WSB1 WD repeat and SOCS box containing 1 0.022323
TOP1 topoisomerase (DNA) I 0.0223012
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0221985
MAST4 microtubule associated serine/threonine kinase family member 4 0.0219304
CD46 CD46 molecule, complement regulatory protein 0.0216492
FBXO22 F-box protein 22 0.0215559
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 0.0214588
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0205199
NTN1 netrin 1 0.0201017
POLH polymerase (DNA directed), eta 0.0198295
CSNK1G1 casein kinase 1, gamma 1 0.0193671
RPS2 ribosomal protein S2 0.0188368
YBX1 Y box binding protein 1 0.0188235
RPS4X ribosomal protein S4, X-linked 0.0186601
PTMA prothymosin, alpha 0.0186346
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0185992
FUS FUS RNA binding protein 0.0184954
CAMTA1 calmodulin binding transcription activator 1 0.0183153
TIGAR TP53 induced glycolysis regulatory phosphatase 0.0182684
TPT1 tumor protein, translationally-controlled 1 0.0178903
RPL9 ribosomal protein L9 0.017828
PKM pyruvate kinase, muscle 0.0177857
APAF1 apoptotic peptidase activating factor 1 0.0177797
CCNL1 cyclin L1 0.017669
YBX3 Y box binding protein 3 0.0172829
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.0171089
ASTN2 astrotactin 2 0.0170599
TNFRSF10B tumor necrosis factor receptor superfamily, member 10b 0.0170443
E2F7 E2F transcription factor 7 0.0169627
SFTPA2 surfactant protein A2 0.0168384
AK1 adenylate kinase 1 0.0166783
TPM3 tropomyosin 3 0.0165088
HLA-B major histocompatibility complex, class I, B 0.0164628
MLEC malectin 0.0163605
RRM2B ribonucleotide reductase M2 B (TP53 inducible) 0.0162717
GLS2 glutaminase 2 (liver, mitochondrial) 0.0162198
NOPCHAP1 NOP protein chaperone 1 0.0161945
RPS21 ribosomal protein S21 0.0161931
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0161706
LMNA lamin A/C 0.0161699
XPR1 xenotropic and polytropic retrovirus receptor 1 0.0159185
BAZ1A bromodomain adjacent to zinc finger domain, 1A 0.0155796
RPLP2 ribosomal protein, large, P2 0.0154995
CASK calcium/calmodulin-dependent serine protein kinase (MAGUK family) 0.0151789
SLC25A5 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 0.0151765
ATP5F1B ATP synthase F1 subunit beta 0.0150864
RBPJ recombination signal binding protein for immunoglobulin kappa J region 0.0150849
PA2G4 proliferation-associated 2G4, 38kDa 0.0149719
UBASH3B ubiquitin associated and SH3 domain containing B 0.0148325
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 0.0145816
EIF1 eukaryotic translation initiation factor 1 0.0145514
OGA O-GlcNAcase 0.0143305
SLC5A3 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 0.0142518
PNN pinin, desmosome associated protein 0.0142302
HELZ helicase with zinc finger 0.0141576
LARGE1 LARGE xylosyl- and glucuronyltransferase 1 0.0141574
PIK3C2A phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha 0.0141157
ASCC3 activating signal cointegrator 1 complex subunit 3 0.0139286
RPS3 ribosomal protein S3 0.0139135
TLE4 transducin-like enhancer of split 4 0.0138818
NSUN6 NOP2/Sun domain family, member 6 0.0137882
ADAM23 ADAM metallopeptidase domain 23 0.013781
RPS8 ribosomal protein S8 0.0137433
RPS17 ribosomal protein S17 0.0137213
ZMAT3 zinc finger, matrin-type 3 0.0136102
PRKCA protein kinase C, alpha 0.0135528
ATP5F1E ATP synthase F1 subunit epsilon 0.0135018
SERINC5 serine incorporator 5 0.0135017
SLC30A1 solute carrier family 30 (zinc transporter), member 1 0.0134758
BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) 0.013427
WDR43 WD repeat domain 43 0.0132775
TNFRSF10D tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain 0.0132492
DDX3Y DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked 0.0132299
RPL12 ribosomal protein L12 0.013218
SPECC1 sperm antigen with calponin homology and coiled-coil domains 1 0.0132177
PFN1 profilin 1 0.013203

decreased expression

Symbol Name Standardized Value
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.23823
PDE4D phosphodiesterase 4D, cAMP-specific -0.229264
EFNA5 ephrin-A5 -0.174917
PSD3 pleckstrin and Sec7 domain containing 3 -0.162129
CDH11 cadherin 11, type 2, OB-cadherin (osteoblast) -0.157891
FN1 fibronectin 1 -0.14045
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.136356
ASPH aspartate beta-hydroxylase -0.123485
GDA guanine deaminase -0.110564
PDE10A phosphodiesterase 10A -0.0991009
DST dystonin -0.0854349
COL5A2 collagen, type V, alpha 2 -0.0851005
LIMCH1 LIM and calponin homology domains 1 -0.084048
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 -0.0836565
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 -0.0713899
CDH13 cadherin 13 -0.0696745
TRIO trio Rho guanine nucleotide exchange factor -0.0666917
MAML3 mastermind-like 3 (Drosophila) -0.0634745
PDLIM5 PDZ and LIM domain 5 -0.0628649
IGFBP3 insulin-like growth factor binding protein 3 -0.0622262
SPOCK1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 -0.0611763
MYOF myoferlin -0.0607138
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) -0.0601577
NPAS2 neuronal PAS domain protein 2 -0.0590672
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0580001
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0561692
COL8A1 collagen, type VIII, alpha 1 -0.0557032
KYNU kynureninase -0.0551198
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0537863
ELL2 elongation factor, RNA polymerase II, 2 -0.0537022
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 -0.0535843
FNDC3B fibronectin type III domain containing 3B -0.053
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0527609
DOCK4 dedicator of cytokinesis 4 -0.049934
EPB41L3 erythrocyte membrane protein band 4.1-like 3 -0.0499231
NRCAM neuronal cell adhesion molecule -0.049227
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 -0.0491556
SPTBN1 spectrin, beta, non-erythrocytic 1 -0.0488011
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0484663
SMYD3 SET and MYND domain containing 3 -0.0477033
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0466943
PRKN parkin RBR E3 ubiquitin protein ligase -0.0431618
SLC38A2 solute carrier family 38, member 2 -0.0395201
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0386409
NT5C2 5'-nucleotidase, cytosolic II -0.0378678
PCBP3 poly(rC) binding protein 3 -0.037711
SH3KBP1 SH3-domain kinase binding protein 1 -0.0363308
CXCL8 chemokine (C-X-C motif) ligand 8 -0.0361044
FNDC3A fibronectin type III domain containing 3A -0.035637
TGFBR1 transforming growth factor, beta receptor 1 -0.0347738
BASP1 brain abundant, membrane attached signal protein 1 -0.0343558
NCOA7 nuclear receptor coactivator 7 -0.0342742
CANX calnexin -0.0342653
RTN1 reticulon 1 -0.0342223
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase -0.0336176
P3H2 prolyl 3-hydroxylase 2 -0.0335412
FLNB filamin B, beta -0.0334462
SLC44A1 solute carrier family 44 (choline transporter), member 1 -0.0329683
VCL vinculin -0.0326282
CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 -0.0320868
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 -0.0320732
PLEKHA5 pleckstrin homology domain containing, family A member 5 -0.0318784
TM4SF1 transmembrane 4 L six family member 1 -0.0316356
ADGRD1 adhesion G protein-coupled receptor D1 -0.0312382
COL4A6 collagen, type IV, alpha 6 -0.0302385
SLC39A8 solute carrier family 39 (zinc transporter), member 8 -0.0294382
ZEB2 zinc finger E-box binding homeobox 2 -0.0290726
SLC7A2 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 -0.0289491
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 -0.0286645
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) -0.028433
ATXN1 ataxin 1 -0.0283894
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.0279902
SMAD2 SMAD family member 2 -0.0278801
SAMD4A sterile alpha motif domain containing 4A -0.0274458
NEK7 NIMA-related kinase 7 -0.0273296
CHL1 cell adhesion molecule L1-like -0.0272902
PM20D1 peptidase M20 domain containing 1 -0.027036
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.0269239
MFF mitochondrial fission factor -0.0265343
DGKD diacylglycerol kinase, delta 130kDa -0.0260953
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) -0.0257576
CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 -0.025198
GRAMD1B GRAM domain containing 1B -0.0245199
GLIS3 GLIS family zinc finger 3 -0.0245091
PALLD palladin, cytoskeletal associated protein -0.0241603
DOCK5 dedicator of cytokinesis 5 -0.0240964
NHS Nance-Horan syndrome (congenital cataracts and dental anomalies) -0.0238926
GFPT1 glutamine--fructose-6-phosphate transaminase 1 -0.0238883
MAP7 microtubule-associated protein 7 -0.023886
COL4A5 collagen, type IV, alpha 5 -0.0236814
CTSC cathepsin C -0.022785
AKT3 v-akt murine thymoma viral oncogene homolog 3 -0.0226399
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 -0.0225493
PRKAA2 protein kinase, AMP-activated, alpha 2 catalytic subunit -0.0224389
RAB3B RAB3B, member RAS oncogene family -0.0224057
BCAR3 breast cancer anti-estrogen resistance 3 -0.0220897
EXT1 exostosin glycosyltransferase 1 -0.0219879
ITPRID2 ITPR interacting domain containing 2 -0.0219202
TXNRD1 thioredoxin reductase 1 -0.0218238
LDHA lactate dehydrogenase A -0.0211434