Etioplast Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025
Category structural or functional annotations
Type cellular component
Description A plastid arrested in the development of chloroplasts from proplastids due to absence of light or low light conditions. (Gene Ontology, GO_0009513)
External Link http://amigo.geneontology.org/amigo/term/GO:0009513
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Genes

257 proteins co-occuring with the Etioplast cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.

Symbol Name Standardized Value
PRH1 proline-rich protein HaeIII subfamily 1 2.953
PRH2 proline-rich protein HaeIII subfamily 2 2.941
DET1 de-etiolated homolog 1 (Arabidopsis) 2.729
PIF1 PIF1 5'-to-3' DNA helicase 2.537
GLIS3 GLIS family zinc finger 3 2.412
LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 2.41
BFSP2 beaded filament structural protein 2, phakinin 2.398
YME1L1 YME1-like 1 ATPase 2.094
CRY1 cryptochrome circadian clock 1 1.912
GGPS1 geranylgeranyl diphosphate synthase 1 1.907
SAMM50 SAMM50 sorting and assembly machinery component 1.894
CLPP caseinolytic mitochondrial matrix peptidase proteolytic subunit 1.888
MTERF1 mitochondrial transcription termination factor 1 1.794
CRY2 cryptochrome circadian clock 2 1.789
ARFIP2 ADP-ribosylation factor interacting protein 2 1.708
GATA5 GATA binding protein 5 1.645
DDB1 damage-specific DNA binding protein 1, 127kDa 1.607
SLC25A1 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 1.603
FSD2 fibronectin type III and SPRY domain containing 2 1.587
PPOX protoporphyrinogen oxidase 1.516
UROD uroporphyrinogen decarboxylase 1.506
CLPS colipase, pancreatic 1.493
MYB v-myb avian myeloblastosis viral oncogene homolog 1.49
TXN2 thioredoxin 2 1.471
TYRP1 tyrosinase-related protein 1 1.465
HSPA4 heat shock 70kDa protein 4 1.446
MTERF3 mitochondrial transcription termination factor 3 1.428
TBX22 T-box 22 1.414
FUS FUS RNA binding protein 1.406
FAM170A family with sequence similarity 170, member A 1.382
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 1.372
GUSB glucuronidase, beta 1.337
PCDHGA5 protocadherin gamma subfamily A, 5 1.314
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 1.293
PGM1 phosphoglucomutase 1 1.29
PTRH2 peptidyl-tRNA hydrolase 2 1.282
UGP2 UDP-glucose pyrophosphorylase 2 1.28
SPCS1 signal peptidase complex subunit 1 homolog (S. cerevisiae) 1.278
CPOX coproporphyrinogen oxidase 1.244
ACKR4 atypical chemokine receptor 4 1.237
AFMID arylformamidase 1.222
ALAD aminolevulinate dehydratase 1.218
LOC102724560 cystathionine beta-synthase 1.215
SRP54 signal recognition particle 54kDa 1.207
DNAJA3 DnaJ (Hsp40) homolog, subfamily A, member 3 1.205
PRPF19 pre-mRNA processing factor 19 1.192
MTERF2 mitochondrial transcription termination factor 2 1.188
BBX bobby sox homolog (Drosophila) 1.184
HSPA6 heat shock 70kDa protein 6 (HSP70B') 1.182
HSPD1 heat shock 60kDa protein 1 (chaperonin) 1.181
STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 1.179
FBN1 fibrillin 1 1.175
ZNF346 zinc finger protein 346 1.174
ADCY10 adenylate cyclase 10 (soluble) 1.173
MARS1 methionyl-tRNA synthetase 1 1.172
SFRP4 secreted frizzled-related protein 4 1.161
TALDO1 transaldolase 1 1.153
HPD 4-hydroxyphenylpyruvate dioxygenase 1.149
RPS16 ribosomal protein S16 1.139
CYTH3 cytohesin 3 1.132
SP100 SP100 nuclear antigen 1.121
PRPS1L1 phosphoribosyl pyrophosphate synthetase 1-like 1 1.117
NRIP1 nuclear receptor interacting protein 1 1.113
BLVRA biliverdin reductase A 1.111
INO80 INO80 complex subunit 1.11
OVCA2 ovarian tumor suppressor candidate 2 1.11
PCDHB16 protocadherin beta 16 1.109
BBOX1 butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1 1.102
LYL1 lymphoblastic leukemia associated hematopoiesis regulator 1 1.101
VCP valosin containing protein 1.092
MYBPH myosin binding protein H 1.084
PADI1 peptidyl arginine deiminase, type I 1.082
TRIT1 tRNA isopentenyltransferase 1 1.075
ABI3 ABI family, member 3 1.075
PXDNL peroxidasin-like 1.066
PXDN peroxidasin 1.065
CES1 carboxylesterase 1 1.051
PCDHB11 protocadherin beta 11 1.049
SCARA3 scavenger receptor class A, member 3 1.034
DHX8 DEAH (Asp-Glu-Ala-His) box polypeptide 8 1.031
TRNT1 tRNA nucleotidyl transferase, CCA-adding, 1 1.028
EBF1 early B-cell factor 1 1.027
NME3 NME/NM23 nucleoside diphosphate kinase 3 1.023
HBS1L HBS1-like translational GTPase 1.002
LGALS1 lectin, galactoside-binding, soluble, 1 1.002
CHMP1B charged multivesicular body protein 1B 1.001
ST8SIA4 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 0.985
LSM4 LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) 0.98
COX15 cytochrome c oxidase assembly homolog 15 (yeast) 0.979
KAT6B K(lysine) acetyltransferase 6B 0.975
DNAJC19 DnaJ (Hsp40) homolog, subfamily C, member 19 0.969
TM4SF18 transmembrane 4 L six family member 18 0.958
SCO2 SCO2 cytochrome c oxidase assembly protein 0.953
CHMP1A charged multivesicular body protein 1A 0.95
FECH ferrochelatase 0.95
PSMD11 proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 0.94
TRIM25 tripartite motif containing 25 0.936
LAX1 lymphocyte transmembrane adaptor 1 0.935
HMBS hydroxymethylbilane synthase 0.933
RPS15 ribosomal protein S15 0.933
AIRE autoimmune regulator 0.93
CYP26A1 cytochrome P450, family 26, subfamily A, polypeptide 1 0.929
POLR2F polymerase (RNA) II (DNA directed) polypeptide F 0.919
DLL3 delta-like 3 (Drosophila) 0.913
FBF1 Fas (TNFRSF6) binding factor 1 0.897
EBF3 early B-cell factor 3 0.895
MAT1A methionine adenosyltransferase I, alpha 0.888
CCRL2 chemokine (C-C motif) receptor-like 2 0.885
TIMM17A translocase of inner mitochondrial membrane 17 homolog A (yeast) 0.88
NSUN4 NOP2/Sun domain family, member 4 0.88
CKAP2 cytoskeleton associated protein 2 0.877
SRI sorcin 0.874
HMGCR 3-hydroxy-3-methylglutaryl-CoA reductase 0.871
AMY2B amylase, alpha 2B (pancreatic) 0.865
TOMM40 translocase of outer mitochondrial membrane 40 homolog (yeast) 0.856
CHRM2 cholinergic receptor, muscarinic 2 0.847
GOLPH3 golgi phosphoprotein 3 (coat-protein) 0.838
AMY1B amylase, alpha 1B (salivary) 0.835
NUDT4 nudix (nucleoside diphosphate linked moiety X)-type motif 4 0.834
CRHR2 corticotropin releasing hormone receptor 2 0.83
AMY2A amylase, alpha 2A (pancreatic) 0.828
TAC4 tachykinin 4 (hemokinin) 0.824
SLCO1A2 solute carrier organic anion transporter family, member 1A2 0.82
RTP2 receptor (chemosensory) transporter protein 2 0.819
PREB prolactin regulatory element binding 0.81
SLC35B3 solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B3 0.801
PNPLA7 patatin-like phospholipase domain containing 7 0.799
MBTPS2 membrane-bound transcription factor peptidase, site 2 0.797
EPRS1 glutamyl-prolyl-tRNA synthetase 1 0.788
GSR glutathione reductase 0.781
VDAC3 voltage-dependent anion channel 3 0.774
FBN2 fibrillin 2 0.773
SNRPA1 small nuclear ribonucleoprotein polypeptide A' 0.773
HEBP1 heme binding protein 1 0.772
MYC v-myc avian myelocytomatosis viral oncogene homolog 0.767
NOM1 nucleolar protein with MIF4G domain 1 0.766
GLYCTK glycerate kinase 0.765
ADH1A alcohol dehydrogenase 1A (class I), alpha polypeptide 0.764
SRXN1 sulfiredoxin 1 0.763
TTPA tocopherol (alpha) transfer protein 0.752
NFYA nuclear transcription factor Y, alpha 0.748
URB1 URB1 ribosome biogenesis 1 homolog (S. cerevisiae) 0.74
GATA1 GATA binding protein 1 (globin transcription factor 1) 0.734
SMR3B submaxillary gland androgen regulated protein 3B 0.731
DNAJB1 DnaJ (Hsp40) homolog, subfamily B, member 1 0.725
TKT transketolase 0.725
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.717
PPIG peptidylprolyl isomerase G (cyclophilin G) 0.715
CLEC5A C-type lectin domain family 5, member A 0.715
ANG angiogenin, ribonuclease, RNase A family, 5 0.713
GZMM granzyme M (lymphocyte met-ase 1) 0.707
MATN3 matrilin 3 0.703
ACP4 acid phosphatase 4 0.697
ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 0.696
SERPINB9 serpin peptidase inhibitor, clade B (ovalbumin), member 9 0.695
EEF1A2 eukaryotic translation elongation factor 1 alpha 2 0.693
MRPL1 mitochondrial ribosomal protein L1 0.691
GET3 guided entry of tail-anchored proteins factor 3, ATPase 0.691
CALML6 calmodulin-like 6 0.69
TIMM8A translocase of inner mitochondrial membrane 8 homolog A (yeast) 0.69
CALML4 calmodulin-like 4 0.69
CALML5 calmodulin-like 5 0.689
MTRF1 mitochondrial translational release factor 1 0.688
PGP phosphoglycolate phosphatase 0.688
CALML3 calmodulin-like 3 0.688
BCKDHA branched chain keto acid dehydrogenase E1, alpha polypeptide 0.688
N4BP1 NEDD4 binding protein 1 0.682
HSPBP1 HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1 0.68
LOX lysyl oxidase 0.68
COX6B1 cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) 0.679
PPA1 pyrophosphatase (inorganic) 1 0.677
MRPL11 mitochondrial ribosomal protein L11 0.672
HSPA8 heat shock 70kDa protein 8 0.672
NRDE2 NRDE-2, necessary for RNA interference, domain containing 0.671
RNASE13 ribonuclease, RNase A family, 13 (non-active) 0.667
CALM3 calmodulin 3 (phosphorylase kinase, delta) 0.665
GGH gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase) 0.652
MSMB microseminoprotein, beta- 0.65
DDX28 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 0.649
MINDY4 MINDY lysine 48 deubiquitinase 4 0.647
ATP5IF1 ATP synthase inhibitory factor subunit 1 0.647
LOXHD1 lipoxygenase homology domains 1 0.642
SUMO4 small ubiquitin-like modifier 4 0.641
CRPPA CDP-L-ribitol pyrophosphorylase A 0.641
BNC1 basonuclin 1 0.639
PPP2R3B protein phosphatase 2, regulatory subunit B'', beta 0.638
RB1 retinoblastoma 1 0.63
REM2 RAS (RAD and GEM)-like GTP binding 2 0.627
SHROOM2 shroom family member 2 0.627
MDH2 malate dehydrogenase 2, NAD (mitochondrial) 0.626
SFTPA2 surfactant protein A2 0.626
NFYC nuclear transcription factor Y, gamma 0.622
QSOX2 quiescin Q6 sulfhydryl oxidase 2 0.621
CTRL chymotrypsin-like 0.62
CHRDL2 chordin-like 2 0.619
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.619
NIPSNAP2 nipsnap homolog 2 0.619
TOMM70 translocase of outer mitochondrial membrane 70 0.618
MED8 mediator complex subunit 8 0.61
TIMELESS timeless circadian clock 0.607
RBKS ribokinase 0.607
MITF microphthalmia-associated transcription factor 0.605
EBF2 early B-cell factor 2 0.604
PFDN2 prefoldin subunit 2 0.603
HSD17B4 hydroxysteroid (17-beta) dehydrogenase 4 0.601
CARD16 caspase recruitment domain family, member 16 0.6
GABARAPL2 GABA(A) receptor-associated protein-like 2 0.599
PAM16 presequence translocase-associated motor 16 homolog (S. cerevisiae) 0.591
IDE insulin-degrading enzyme 0.588
GABARAPL1 GABA(A) receptor-associated protein like 1 0.588
PRSS23 protease, serine, 23 0.585
STIP1 stress-induced phosphoprotein 1 0.585
NIPSNAP1 nipsnap homolog 1 (C. elegans) 0.584
PFKL phosphofructokinase, liver 0.58
PTPRE protein tyrosine phosphatase, receptor type, E 0.58
CYP17A1 cytochrome P450, family 17, subfamily A, polypeptide 1 0.574
ZIC1 Zic family member 1 0.567
GLUL glutamate-ammonia ligase 0.565
GRPEL1 GrpE-like 1, mitochondrial (E. coli) 0.565
ARRB1 arrestin, beta 1 0.558
MAP2K5 mitogen-activated protein kinase kinase 5 0.558
OTP orthopedia homeobox 0.556
CACNB3 calcium channel, voltage-dependent, beta 3 subunit 0.555
PARK7 parkinson protein 7 0.552
CENPV centromere protein V 0.549
PSG7 pregnancy specific beta-1-glycoprotein 7 (gene/pseudogene) 0.549
GDPGP1 GDP-D-glucose phosphorylase 1 0.546
EML1 echinoderm microtubule associated protein like 1 0.545
SLPI secretory leukocyte peptidase inhibitor 0.544
SLC35B2 solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2 0.54
EARS2 glutamyl-tRNA synthetase 2, mitochondrial 0.54
CREB3L4 cAMP responsive element binding protein 3-like 4 0.539
DNM1L dynamin 1-like 0.539
PSG8 pregnancy specific beta-1-glycoprotein 8 0.535
COL2A1 collagen, type II, alpha 1 0.535
NUS1 nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) 0.534
PPIC peptidylprolyl isomerase C (cyclophilin C) 0.529
CYCS cytochrome c, somatic 0.526
PPP4R3B protein phosphatase 4 regulatory subunit 3B 0.526
UBQLN3 ubiquilin 3 0.525
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 0.525
TKTL2 transketolase-like 2 0.523
MLF1 myeloid leukemia factor 1 0.523
ATP12A ATPase, H+/K+ transporting, nongastric, alpha polypeptide 0.522
ATP4A ATPase, H+/K+ exchanging, alpha polypeptide 0.522
FDX2 ferredoxin 2 0.521
EVA1A eva-1 homolog A (C. elegans) 0.517
SPINK1 serine peptidase inhibitor, Kazal type 1 0.512
CIB1 calcium and integrin binding 1 (calmyrin) 0.512
PSG2 pregnancy specific beta-1-glycoprotein 2 0.512
HMBOX1 homeobox containing 1 0.508
REM1 RAS (RAD and GEM)-like GTP-binding 1 0.504
TNFRSF10B tumor necrosis factor receptor superfamily, member 10b 0.503
HMGN5 high mobility group nucleosome binding domain 5 0.502
POLR2J polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa 0.502
MORC1 MORC family CW-type zinc finger 1 0.501
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 0.501