Fedratinib (hydrochloride hydrate)_RKO Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Fedratinib (hydrochloride hydrate) perturbation in RKO cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Fedratinib (hydrochloride hydrate)_RKO drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
ACTG1 actin gamma 1 0.157297
PABPC1 poly(A) binding protein, cytoplasmic 1 0.139178
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.11372
LAMB3 laminin, beta 3 0.0809469
UBR5 ubiquitin protein ligase E3 component n-recognin 5 0.0801239
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.079769
NUP58 nucleoporin 58 0.0746008
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0685515
RAD21 RAD21 homolog (S. pombe) 0.0674297
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0668387
OGA O-GlcNAcase 0.065144
JMJD1C jumonji domain containing 1C 0.0618194
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.0618108
KDM3A lysine (K)-specific demethylase 3A 0.0603824
ELL2 elongation factor, RNA polymerase II, 2 0.0601891
RLF rearranged L-myc fusion 0.0585999
PSME4 proteasome (prosome, macropain) activator subunit 4 0.0572894
UBA6 ubiquitin-like modifier activating enzyme 6 0.0564201
KMT2C lysine (K)-specific methyltransferase 2C 0.0556869
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha 0.0544927
BHLHE40 basic helix-loop-helix family, member e40 0.0543843
KMT2E lysine (K)-specific methyltransferase 2E 0.0516206
USP3 ubiquitin specific peptidase 3 0.0491643
ZNF292 zinc finger protein 292 0.0486761
PTK2 protein tyrosine kinase 2 0.0481426
ADAM9 ADAM metallopeptidase domain 9 0.0473147
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0460406
TXNRD1 thioredoxin reductase 1 0.0455157
ZFAND3 zinc finger, AN1-type domain 3 0.0450865
SET SET nuclear proto-oncogene 0.044288
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0441633
ATP13A3 ATPase type 13A3 0.0438915
CANX calnexin 0.0431421
TPD52 tumor protein D52 0.0431024
RBM39 RNA binding motif protein 39 0.0423631
RASA2 RAS p21 protein activator 2 0.0417462
KDM2A lysine (K)-specific demethylase 2A 0.041163
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0410773
USP9X ubiquitin specific peptidase 9, X-linked 0.0409526
CALU calumenin 0.0407142
YTHDC1 YTH domain containing 1 0.040501
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1 0.040259
NIPBL Nipped-B homolog (Drosophila) 0.0401125
RNMT RNA (guanine-7-) methyltransferase 0.0400519
MKLN1 muskelin 1, intracellular mediator containing kelch motifs 0.0399453
GOLGA4 golgin A4 0.0394744
RB1CC1 RB1-inducible coiled-coil 1 0.0393955
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0389612
RTN4 reticulon 4 0.0385721
NCKAP1 NCK-associated protein 1 0.0384968
GARS1 glycyl-tRNA synthetase 1 0.0380642
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0368501
WDR45B WD repeat domain 45B 0.0368319
BTAF1 BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa 0.0366838
MAP2K1 mitogen-activated protein kinase kinase 1 0.036674
PRRC2C proline-rich coiled-coil 2C 0.0366594
SBF2 SET binding factor 2 0.0363126
SPTAN1 spectrin, alpha, non-erythrocytic 1 0.0362372
PCBP2 poly(rC) binding protein 2 0.0359419
ZEB1 zinc finger E-box binding homeobox 1 0.0358541
STC1 stanniocalcin 1 0.0354515
MCTP1 multiple C2 domains, transmembrane 1 0.0353253
PRKRIP1 PRKR interacting protein 1 (IL11 inducible) 0.0347943
CCNL1 cyclin L1 0.0345235
BIRC6 baculoviral IAP repeat containing 6 0.0344232
WAC WW domain containing adaptor with coiled-coil 0.0338331
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0338321
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0337623
PICALM phosphatidylinositol binding clathrin assembly protein 0.0337123
RNF19A ring finger protein 19A, RBR E3 ubiquitin protein ligase 0.0334547
TSC22D2 TSC22 domain family, member 2 0.0330003
SPAG9 sperm associated antigen 9 0.0329188
CHD1 chromodomain helicase DNA binding protein 1 0.0328194
FOXJ3 forkhead box J3 0.032671
ANXA5 annexin A5 0.0326709
PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 0.0324651
CKAP5 cytoskeleton associated protein 5 0.0320298
TNFRSF10D tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain 0.0319159
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 0.0317553
ZNF654 zinc finger protein 654 0.0314696
EIF4B eukaryotic translation initiation factor 4B 0.0314667
FOXO3 forkhead box O3 0.0312852
TM9SF3 transmembrane 9 superfamily member 3 0.03124
UBXN7 UBX domain protein 7 0.0309588
MAP4K5 mitogen-activated protein kinase kinase kinase kinase 5 0.0308365
ARFGEF3 ARFGEF family member 3 0.0307662
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 0.0304509
UBR4 ubiquitin protein ligase E3 component n-recognin 4 0.0304248
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.0303541
RBM33 RNA binding motif protein 33 0.0300147
ADAM17 ADAM metallopeptidase domain 17 0.0296352
CNOT4 CCR4-NOT transcription complex, subunit 4 0.0294315
PUM2 pumilio RNA-binding family member 2 0.0294251
CNOT2 CCR4-NOT transcription complex, subunit 2 0.0293791
KDM6A lysine (K)-specific demethylase 6A 0.0292758
HMGB2 high mobility group box 2 0.0290475
RNF145 ring finger protein 145 0.0289621
EPB41L2 erythrocyte membrane protein band 4.1-like 2 0.0289133
CRY1 cryptochrome circadian clock 1 0.0288903
DSCAM Down syndrome cell adhesion molecule 0.0287642

decreased expression

Symbol Name Standardized Value
ZNF438 zinc finger protein 438 -0.151964
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.150508
MT2A metallothionein 2A -0.135542
HMGA2 high mobility group AT-hook 2 -0.0935686
ARHGAP22 Rho GTPase activating protein 22 -0.0851236
FRMD6 FERM domain containing 6 -0.0789869
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0788409
DLC1 DLC1 Rho GTPase activating protein -0.0726787
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0714964
IFI16 interferon, gamma-inducible protein 16 -0.069179
FLNB filamin B, beta -0.0676975
BNC2 basonuclin 2 -0.0646584
TMSB10 thymosin beta 10 -0.0621801
NABP1 nucleic acid binding protein 1 -0.0609554
SLC38A2 solute carrier family 38, member 2 -0.0576107
RAD51B RAD51 paralog B -0.0558386
SP100 SP100 nuclear antigen -0.0552853
MTAP methylthioadenosine phosphorylase -0.0550808
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 -0.0545292
RPL9 ribosomal protein L9 -0.0530735
TPT1 tumor protein, translationally-controlled 1 -0.0501465
STAT1 signal transducer and activator of transcription 1, 91kDa -0.0492055
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.049197
RPS6 ribosomal protein S6 -0.0490491
RPL35A ribosomal protein L35a -0.048578
RPS24 ribosomal protein S24 -0.0473775
SUPT3H suppressor of Ty 3 homolog (S. cerevisiae) -0.0470069
RPLP1 ribosomal protein, large, P1 -0.0457387
FTL ferritin, light polypeptide -0.0431305
NAV3 neuron navigator 3 -0.0425632
FHIT fragile histidine triad -0.0421305
RPS8 ribosomal protein S8 -0.039377
MAPKAP1 mitogen-activated protein kinase associated protein 1 -0.0364814
ZBTB20 zinc finger and BTB domain containing 20 -0.0363987
RPL12 ribosomal protein L12 -0.0361405
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 -0.0358608
RPL31 ribosomal protein L31 -0.0358129
EFNB2 ephrin-B2 -0.0356246
IFI6 interferon, alpha-inducible protein 6 -0.0348896
EXOC4 exocyst complex component 4 -0.0347015
PBX3 pre-B-cell leukemia homeobox 3 -0.0346016
RIGI RNA sensor RIG-I -0.0341947
TM4SF1 transmembrane 4 L six family member 1 -0.0338895
TCF12 transcription factor 12 -0.0337293
RPS21 ribosomal protein S21 -0.0331771
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.032945
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type -0.0319977
HMGA1 high mobility group AT-hook 1 -0.0315759
PHC2 polyhomeotic homolog 2 (Drosophila) -0.0315537
WNT2B wingless-type MMTV integration site family, member 2B -0.0308046
RPL11 ribosomal protein L11 -0.0304556
RPS23 ribosomal protein S23 -0.0298559
CAST calpastatin -0.0295966
SPIDR scaffolding protein involved in DNA repair -0.0293447
ALCAM activated leukocyte cell adhesion molecule -0.0293226
SAMD12 sterile alpha motif domain containing 12 -0.0291343
RPS15 ribosomal protein S15 -0.0291168
RPS19 ribosomal protein S19 -0.0286321
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 -0.0280779
RPS29 ribosomal protein S29 -0.0280565
PHF14 PHD finger protein 14 -0.0278468
CUX1 cut-like homeobox 1 -0.0278102
FRMD4A FERM domain containing 4A -0.0275948
PLSCR1 phospholipid scramblase 1 -0.027149
RPL7A ribosomal protein L7a -0.0271469
SIPA1L1 signal-induced proliferation-associated 1 like 1 -0.0266756
RPLP2 ribosomal protein, large, P2 -0.0264467
ASPH aspartate beta-hydroxylase -0.0263243
RPL37A ribosomal protein L37a -0.0262944
TUBB4B tubulin, beta 4B class IVb -0.0262037
PARP14 poly (ADP-ribose) polymerase family, member 14 -0.0260828
MX1 MX dynamin-like GTPase 1 -0.025899
GPHN gephyrin -0.0258318
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.025822
WWOX WW domain containing oxidoreductase -0.0257875
RASAL2 RAS protein activator like 2 -0.0257348
RAB3IP RAB3A interacting protein -0.0256199
PTPRG protein tyrosine phosphatase, receptor type, G -0.0256121
RPS17 ribosomal protein S17 -0.0254651
RPS25 ribosomal protein S25 -0.0253477
RPS13 ribosomal protein S13 -0.0249245
ISG15 ISG15 ubiquitin-like modifier -0.0247428
PCNX4 pecanex 4 -0.0246385
LRBA LPS-responsive vesicle trafficking, beach and anchor containing -0.0246182
NOP56 NOP56 ribonucleoprotein -0.0246016
KRR1 KRR1, small subunit (SSU) processome component, homolog (yeast) -0.0238589
RPL34 ribosomal protein L34 -0.0237164
GFPT2 glutamine-fructose-6-phosphate transaminase 2 -0.0235313
ANTXR2 anthrax toxin receptor 2 -0.0232772
GALNT18 polypeptide N-acetylgalactosaminyltransferase 18 -0.0230783
UGGT2 UDP-glucose glycoprotein glucosyltransferase 2 -0.0229413
LRMDA leucine rich melanocyte differentiation associated -0.0228933
ANK2 ankyrin 2, neuronal -0.0226982
RPL30 ribosomal protein L30 -0.0222473
CMSS1 cms1 ribosomal small subunit homolog (yeast) -0.0221433
PFN1 profilin 1 -0.0221383
RPS27A ribosomal protein S27a -0.0220175
EGR1 early growth response 1 -0.021971
MX2 MX dynamin-like GTPase 2 -0.0218253
IQCJ-SCHIP1 IQCJ-SCHIP1 readthrough -0.0216622