Ferulic acid_HepG2/C3A Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Ferulic acid perturbation in HepG2/C3A cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Ferulic acid_HepG2/C3A drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
FN1 fibronectin 1 0.269743
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.253189
FNDC3B fibronectin type III domain containing 3B 0.183453
EEF2 eukaryotic translation elongation factor 2 0.150631
VEGFA vascular endothelial growth factor A 0.126981
ERRFI1 ERBB receptor feedback inhibitor 1 0.11466
SPTBN1 spectrin, beta, non-erythrocytic 1 0.114336
SAMD4A sterile alpha motif domain containing 4A 0.114111
LRMDA leucine rich melanocyte differentiation associated 0.109528
PTTG1IP pituitary tumor-transforming 1 interacting protein 0.0959614
MAML2 mastermind-like 2 (Drosophila) 0.0952268
SLC38A2 solute carrier family 38, member 2 0.0912158
BHLHE40 basic helix-loop-helix family, member e40 0.08613
MYH9 myosin, heavy chain 9, non-muscle 0.0843594
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.081529
RALGAPA2 Ral GTPase activating protein, alpha subunit 2 (catalytic) 0.0795466
PEG3 paternally expressed 3 0.0747915
AFDN afadin, adherens junction formation factor 0.0747895
NKD1 naked cuticle homolog 1 (Drosophila) 0.0731195
PLEC plectin 0.0691844
FAT1 FAT atypical cadherin 1 0.0670408
IGF2 insulin-like growth factor 2 0.0661377
ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila) 0.0660645
ATP1A4 ATPase, Na+/K+ transporting, alpha 4 polypeptide 0.0653085
EPAS1 endothelial PAS domain protein 1 0.0644913
NPAS2 neuronal PAS domain protein 2 0.063934
TRIO trio Rho guanine nucleotide exchange factor 0.0635224
CFB complement factor B 0.0631485
C3 complement component 3 0.0619732
APOA2 apolipoprotein A-II 0.0612292
PTPRM protein tyrosine phosphatase, receptor type, M 0.0592091
KRT8 keratin 8, type II 0.0587095
LOC112694756 uncharaterized LOC112694756 0.0585654
SORL1 sortilin-related receptor, L(DLR class) A repeats containing 0.0583296
ELL2 elongation factor, RNA polymerase II, 2 0.0581145
NEDD9 neural precursor cell expressed, developmentally down-regulated 9 0.0561421
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0555587
DDIT4 DNA-damage-inducible transcript 4 0.0536148
ATXN1 ataxin 1 0.0530898
FLNB filamin B, beta 0.052989
A2M alpha-2-macroglobulin 0.0529761
SESTD1 SEC14 and spectrin domains 1 0.0527699
IQSEC1 IQ motif and Sec7 domain 1 0.05274
PTPRF protein tyrosine phosphatase, receptor type, F 0.0510372
TNS1 tensin 1 0.0495459
WDFY2 WD repeat and FYVE domain containing 2 0.0482657
DST dystonin 0.0475532
UBR4 ubiquitin protein ligase E3 component n-recognin 4 0.0475319
MACF1 microtubule-actin crosslinking factor 1 0.0474036
ENO1 enolase 1, (alpha) 0.0472824
DSPP dentin sialophosphoprotein 0.0458437
DOCK4 dedicator of cytokinesis 4 0.0452457
EGR1 early growth response 1 0.0450928
APOB apolipoprotein B 0.0450879
GMDS GDP-mannose 4,6-dehydratase 0.0447314
LPP LIM domain containing preferred translocation partner in lipoma 0.044694
RNF19A ring finger protein 19A, RBR E3 ubiquitin protein ligase 0.0444369
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0444309
RACK1 receptor for activated C kinase 1 0.0441296
RPL23 ribosomal protein L23 0.0441013
PLA2G2A phospholipase A2, group IIA (platelets, synovial fluid) 0.0439248
TM4SF1 transmembrane 4 L six family member 1 0.0431201
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.0429854
MSI2 musashi RNA-binding protein 2 0.0426087
KRT18 keratin 18, type I 0.0425785
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 0.0424442
APOA1 apolipoprotein A-I 0.0408092
FMNL2 formin-like 2 0.0407341
NDRG1 N-myc downstream regulated 1 0.0403976
SHB Src homology 2 domain containing adaptor protein B 0.0392221
PRRC2B proline-rich coiled-coil 2B 0.038837
SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) 0.0386576
RPL3 ribosomal protein L3 0.0383641
IGFBP1 insulin-like growth factor binding protein 1 0.0379903
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 0.0378878
GRB10 growth factor receptor-bound protein 10 0.0376561
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 0.0371776
RNF213 ring finger protein 213 0.0366108
ZMIZ1 zinc finger, MIZ-type containing 1 0.0365428
MT2A metallothionein 2A 0.0362969
KIAA1217 KIAA1217 0.0358116
RERE arginine-glutamic acid dipeptide (RE) repeats 0.0356475
PARD3 par-3 family cell polarity regulator 0.0353879
TANC1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 0.0350865
APOE apolipoprotein E 0.033964
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0329378
EHBP1 EH domain binding protein 1 0.0318464
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) 0.0317283
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0316652
ICAM1 intercellular adhesion molecule 1 0.0315946
RPLP0 ribosomal protein, large, P0 0.0311743
MTUS1 microtubule associated tumor suppressor 1 0.0311171
SF3B1 splicing factor 3b, subunit 1, 155kDa 0.031009
ARHGAP26 Rho GTPase activating protein 26 0.0310016
IGF1R insulin-like growth factor 1 receptor 0.0309742
FLNA filamin A, alpha 0.0308325
ARFGEF3 ARFGEF family member 3 0.030768
RASGRF2 Ras protein-specific guanine nucleotide-releasing factor 2 0.0306925
SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 0.0302399
H1-0 H1.0 linker histone 0.0302285

decreased expression

Symbol Name Standardized Value
SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 -0.197697
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.0553801
AKAP12 A kinase (PRKA) anchor protein 12 -0.0510261
RPS2 ribosomal protein S2 -0.0446333
TPT1 tumor protein, translationally-controlled 1 -0.0386528
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0378736
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0302094
STAU1 staufen double-stranded RNA binding protein 1 -0.0272473
KTN1 kinectin 1 (kinesin receptor) -0.0265096
PAPOLA poly(A) polymerase alpha -0.0262463
GPC6 glypican 6 -0.0261896
UBXN4 UBX domain protein 4 -0.0256801
JMJD1C jumonji domain containing 1C -0.0246409
ENKUR enkurin, TRPC channel interacting protein -0.0243463
PNRC1 proline-rich nuclear receptor coactivator 1 -0.0242681
RPL21 ribosomal protein L21 -0.0240018
RPS24 ribosomal protein S24 -0.0237005
RPS6 ribosomal protein S6 -0.0235651
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 -0.0232497
MAP1LC3B microtubule-associated protein 1 light chain 3 beta -0.0230932
UBE2B ubiquitin-conjugating enzyme E2B -0.022002
GOLGB1 golgin B1 -0.0216657
CSGALNACT2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 -0.0216639
RBM25 RNA binding motif protein 25 -0.0214625
DSTN destrin (actin depolymerizing factor) -0.0213539
GPC3 glypican 3 -0.020521
RSL1D1 ribosomal L1 domain containing 1 -0.0204568
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0204459
PDGFB platelet-derived growth factor beta polypeptide -0.0203749
DNAJC1 DnaJ (Hsp40) homolog, subfamily C, member 1 -0.0198618
HSPD1 heat shock 60kDa protein 1 (chaperonin) -0.0195844
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) -0.0195771
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0192441
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.019222
IFNGR1 interferon gamma receptor 1 -0.018712
VPS13B vacuolar protein sorting 13 homolog B (yeast) -0.0186525
GCLC glutamate-cysteine ligase, catalytic subunit -0.0186028
GOLGA4 golgin A4 -0.0184337
GCC2 GRIP and coiled-coil domain containing 2 -0.0184081
ANKRD1 ankyrin repeat domain 1 (cardiac muscle) -0.0180251
MLLT10 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 -0.0177801
TRA2A transformer 2 alpha homolog (Drosophila) -0.0177149
SOS1 son of sevenless homolog 1 (Drosophila) -0.0176938
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa -0.0175981
EIF5B eukaryotic translation initiation factor 5B -0.0173333
BCLAF1 BCL2-associated transcription factor 1 -0.0171269
PTGES3 prostaglandin E synthase 3 (cytosolic) -0.0170662
PNISR PNN-interacting serine/arginine-rich protein -0.0169243
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.0164841
CSNK1G3 casein kinase 1, gamma 3 -0.0162042
GPBP1 GC-rich promoter binding protein 1 -0.016119
EXOC6B exocyst complex component 6B -0.0159668
ATM ATM serine/threonine kinase -0.0156709
HACD2 3-hydroxyacyl-CoA dehydratase 2 -0.0156282
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0155332
LMO7 LIM domain 7 -0.0154357
CLTC clathrin, heavy chain (Hc) -0.0154054
VMP1 vacuole membrane protein 1 -0.0153848
ATP5F1B ATP synthase F1 subunit beta -0.0153089
RPL4 ribosomal protein L4 -0.015289
SVIL supervillin -0.0151314
TXNRD1 thioredoxin reductase 1 -0.0147486
CDC50A cell division cycle 50 P4-ATPase accessory subunit A -0.0147275
TMF1 TATA element modulatory factor 1 -0.01463
ANKIB1 ankyrin repeat and IBR domain containing 1 -0.0137743
ACTR2 ARP2 actin-related protein 2 homolog (yeast) -0.0137331
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 -0.0137279
EPRS1 glutamyl-prolyl-tRNA synthetase 1 -0.0137199
ERC2 ELKS/RAB6-interacting/CAST family member 2 -0.0137014
ZFR zinc finger RNA binding protein -0.0136389
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0135813
PDS5A PDS5 cohesin associated factor A -0.0133507
MCFD2 multiple coagulation factor deficiency 2 -0.0133316
HSPH1 heat shock 105kDa/110kDa protein 1 -0.0132667
NAP1L1 nucleosome assembly protein 1-like 1 -0.0132101
SPIDR scaffolding protein involved in DNA repair -0.0131347
PRPF40A PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) -0.0130652
GPHN gephyrin -0.0130222
HSPE1 heat shock 10kDa protein 1 -0.0130018
PAFAH1B1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) -0.0128831
PRPF4B pre-mRNA processing factor 4B -0.0128522
CAMK2N1 calcium/calmodulin-dependent protein kinase II inhibitor 1 -0.0128357
RPS16 ribosomal protein S16 -0.012813
RAB10 RAB10, member RAS oncogene family -0.012794
DSG2 desmoglein 2 -0.0127689
PERP PERP, TP53 apoptosis effector -0.0127341
CD2AP CD2-associated protein -0.012665
PCBP2 poly(rC) binding protein 2 -0.012664
SMC5 structural maintenance of chromosomes 5 -0.0126573
ZDHHC20 zinc finger, DHHC-type containing 20 -0.0126002
UBE2V1 ubiquitin-conjugating enzyme E2 variant 1 -0.0124687
DNAJC3 DnaJ (Hsp40) homolog, subfamily C, member 3 -0.0124213
RASA2 RAS p21 protein activator 2 -0.0123453
GFPT1 glutamine--fructose-6-phosphate transaminase 1 -0.0123341
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0121908
LRPPRC leucine-rich pentatricopeptide repeat containing -0.0120436
HMGA1 high mobility group AT-hook 1 -0.0120416
KDM3A lysine (K)-specific demethylase 3A -0.0120289
H1-4 H1.4 linker histone, cluster member -0.0120273
CCDC88A coiled-coil domain containing 88A -0.0119459