Folic acid_H4 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Folic acid perturbation in H4 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Folic acid_H4 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
COL6A3 collagen, type VI, alpha 3 0.185199
NLGN1 neuroligin 1 0.0955785
DGKD diacylglycerol kinase, delta 130kDa 0.0780912
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 0.0704281
MKI67 marker of proliferation Ki-67 0.0634896
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 0.0573616
TXNRD1 thioredoxin reductase 1 0.0551432
SMAD3 SMAD family member 3 0.0545806
PKM pyruvate kinase, muscle 0.0531117
RUNX1 runt-related transcription factor 1 0.0472388
NAMPT nicotinamide phosphoribosyltransferase 0.047004
MSN moesin 0.0454149
FAM13A family with sequence similarity 13, member A 0.0431536
PTK2 protein tyrosine kinase 2 0.0403589
ANLN anillin, actin binding protein 0.0394001
NAV2 neuron navigator 2 0.0391264
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0389832
MAP1B microtubule-associated protein 1B 0.0388516
ZNF638 zinc finger protein 638 0.0376673
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) 0.0365042
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0361009
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0350144
ANKRD28 ankyrin repeat domain 28 0.0342333
ANXA2 annexin A2 0.0336758
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0325012
CKAP5 cytoskeleton associated protein 5 0.03218
ANKRD36 ankyrin repeat domain 36 0.0321025
FOXJ3 forkhead box J3 0.0309745
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0309568
FAM219A family with sequence similarity 219, member A 0.0306524
ATXN1 ataxin 1 0.0305282
DNMBP dynamin binding protein 0.0302288
CEP112 centrosomal protein 112kDa 0.0300039
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 0.0297043
COA1 cytochrome c oxidase assembly factor 1 homolog (S. cerevisiae) 0.0293363
NDRG1 N-myc downstream regulated 1 0.0287094
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0286464
ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) 0.0286004
MBNL1 muscleblind-like splicing regulator 1 0.0285993
YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma 0.0283713
RNF220 ring finger protein 220 0.028205
PDE8A phosphodiesterase 8A 0.0280005
USP47 ubiquitin specific peptidase 47 0.0279852
KIF4A kinesin family member 4A 0.0279594
BLTP1 bridge-like lipid transfer protein family member 1 0.0276227
USP24 ubiquitin specific peptidase 24 0.0273559
SMYD3 SET and MYND domain containing 3 0.02731
GALNT2 polypeptide N-acetylgalactosaminyltransferase 2 0.0266684
YEATS2 YEATS domain containing 2 0.0265305
UMAD1 UBAP1-MVB12-associated (UMA) domain containing 1 0.0265231
RNF216 ring finger protein 216 0.0262336
XPO1 exportin 1 0.0256571
ARID1A AT rich interactive domain 1A (SWI-like) 0.0254911
PICALM phosphatidylinositol binding clathrin assembly protein 0.0252934
METTL15 methyltransferase like 15 0.0250684
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.0244134
NFE2L1 nuclear factor, erythroid 2-like 1 0.0243708
GLIS3 GLIS family zinc finger 3 0.0238059
H1-2 H1.2 linker histone, cluster member 0.0237784
FAM20C family with sequence similarity 20, member C 0.0235198
PHC3 polyhomeotic homolog 3 (Drosophila) 0.0233691
SHB Src homology 2 domain containing adaptor protein B 0.0233562
FTO fat mass and obesity associated 0.0233462
ETV6 ets variant 6 0.0231672
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.023086
DST dystonin 0.0228756
SPRED1 sprouty-related, EVH1 domain containing 1 0.0228623
ARID2 AT rich interactive domain 2 (ARID, RFX-like) 0.0228426
FNDC3B fibronectin type III domain containing 3B 0.0228372
KPNA4 karyopherin alpha 4 (importin alpha 3) 0.0228033
GYS1 glycogen synthase 1 (muscle) 0.0227276
RBM39 RNA binding motif protein 39 0.0226033
CENPF centromere protein F, 350/400kDa 0.0225374
JMJD1C jumonji domain containing 1C 0.0223993
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa 0.0223804
GSK3B glycogen synthase kinase 3 beta 0.0222335
PTPRD protein tyrosine phosphatase, receptor type, D 0.0222058
SPRED2 sprouty-related, EVH1 domain containing 2 0.0221124
KLF7 Kruppel-like factor 7 (ubiquitous) 0.0220074
KYNU kynureninase 0.0219297
EEF2 eukaryotic translation elongation factor 2 0.021913
SNX13 sorting nexin 13 0.0218204
PHC2 polyhomeotic homolog 2 (Drosophila) 0.0216253
SSBP2 single-stranded DNA binding protein 2 0.0215796
AVL9 AVL9 homolog (S. cerevisiase) 0.0215732
RNF213 ring finger protein 213 0.021507
ADAM9 ADAM metallopeptidase domain 9 0.0213807
HJURP Holliday junction recognition protein 0.0212686
MYH9 myosin, heavy chain 9, non-muscle 0.0212159
CALN1 calneuron 1 0.0212138
PTPRJ protein tyrosine phosphatase, receptor type, J 0.0212054
HELZ helicase with zinc finger 0.0211711
BIRC2 baculoviral IAP repeat containing 2 0.0211584
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0210952
TNKS tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 0.0210138
PDE4D phosphodiesterase 4D, cAMP-specific 0.0210083
AFF1 AF4/FMR2 family, member 1 0.0209381
PCBP3 poly(rC) binding protein 3 0.0209024
PHF21A PHD finger protein 21A 0.020845
RNF145 ring finger protein 145 0.020711

decreased expression

Symbol Name Standardized Value
VIM vimentin -0.160356
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.14311
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.128348
MT2A metallothionein 2A -0.125824
TMSB10 thymosin beta 10 -0.117727
NALF1 NALCN channel auxiliary factor 1 -0.102689
B2M beta-2-microglobulin -0.0951056
IGFBP3 insulin-like growth factor binding protein 3 -0.0948386
HLA-B major histocompatibility complex, class I, B -0.0799943
FN1 fibronectin 1 -0.0787589
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0786923
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0774999
SEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A -0.0768543
TPT1 tumor protein, translationally-controlled 1 -0.0750462
GARS1 glycyl-tRNA synthetase 1 -0.0614962
IGFBP5 insulin-like growth factor binding protein 5 -0.0607097
GRB10 growth factor receptor-bound protein 10 -0.0606668
SDK1 sidekick cell adhesion molecule 1 -0.0603935
INHBA inhibin, beta A -0.0564574
CALD1 caldesmon 1 -0.0530064
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) -0.0504017
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 -0.0503782
EIF1 eukaryotic translation initiation factor 1 -0.0501059
LOX lysyl oxidase -0.0499033
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.049683
LMAN1 lectin, mannose-binding, 1 -0.0459685
GFPT1 glutamine--fructose-6-phosphate transaminase 1 -0.0455932
TGFBI transforming growth factor, beta-induced, 68kDa -0.0455927
PRSS23 protease, serine, 23 -0.0452473
PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 -0.0446001
FTL ferritin, light polypeptide -0.0444428
CLMP CXADR-like membrane protein -0.0437317
DTNA dystrobrevin, alpha -0.0436203
TIMP3 TIMP metallopeptidase inhibitor 3 -0.0424316
RPS24 ribosomal protein S24 -0.0421114
RPL34 ribosomal protein L34 -0.0404373
HDAC9 histone deacetylase 9 -0.0402264
RPS8 ribosomal protein S8 -0.0399872
GNAS GNAS complex locus -0.0394945
PDIA3 protein disulfide isomerase family A, member 3 -0.0390589
RPS19 ribosomal protein S19 -0.0384903
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.0371893
SDC4 syndecan 4 -0.0370723
IGF2 insulin-like growth factor 2 -0.0364377
TIMP1 TIMP metallopeptidase inhibitor 1 -0.0364353
RPL35A ribosomal protein L35a -0.036215
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 -0.0361948
RPS3 ribosomal protein S3 -0.0360864
S100A6 S100 calcium binding protein A6 -0.0356278
RIGI RNA sensor RIG-I -0.0352424
RPS6 ribosomal protein S6 -0.0351678
CCND1 cyclin D1 -0.0344708
HILPDA hypoxia inducible lipid droplet-associated -0.0335877
EGR1 early growth response 1 -0.0326776
HLA-A major histocompatibility complex, class I, A -0.0323222
HLA-C major histocompatibility complex, class I, C -0.0320313
HYCC1 hyccin PI4KA lipid kinase complex subunit 1 -0.0320002
RPL9 ribosomal protein L9 -0.0313058
PDLIM5 PDZ and LIM domain 5 -0.0312119
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0312065
NAP1L1 nucleosome assembly protein 1-like 1 -0.0310279
S100A10 S100 calcium binding protein A10 -0.0304384
IFIT2 interferon-induced protein with tetratricopeptide repeats 2 -0.0303644
RPLP0 ribosomal protein, large, P0 -0.0297778
AKAP12 A kinase (PRKA) anchor protein 12 -0.0296478
RSL1D1 ribosomal L1 domain containing 1 -0.029285
LIMS1 LIM and senescent cell antigen-like domains 1 -0.0292641
CEMIP cell migration inducing protein, hyaluronan binding -0.0289634
RACK1 receptor for activated C kinase 1 -0.0287322
IL1RAPL1 interleukin 1 receptor accessory protein-like 1 -0.0285857
TMEM158 transmembrane protein 158 (gene/pseudogene) -0.02844
EGFR epidermal growth factor receptor -0.028332
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0279294
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0270648
TMED3 transmembrane emp24 protein transport domain containing 3 -0.0263663
CCNI cyclin I -0.0260883
FUT11 fucosyltransferase 11 (alpha (1,3) fucosyltransferase) -0.0255993
RPL12 ribosomal protein L12 -0.0252701
RPL36A ribosomal protein L36a -0.0250561
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.0250472
INTS6 integrator complex subunit 6 -0.0248452
RPL19 ribosomal protein L19 -0.0245253
TMSB4X thymosin beta 4, X-linked -0.0245124
PTMA prothymosin, alpha -0.0244932
ASPH aspartate beta-hydroxylase -0.0244603
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0239216
SOX5 SRY (sex determining region Y)-box 5 -0.023898
CREB5 cAMP responsive element binding protein 5 -0.0238566
TPI1 triosephosphate isomerase 1 -0.0238134
TMED9 transmembrane emp24 protein transport domain containing 9 -0.0233222
KDELR2 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 -0.0231714
CHCHD2 coiled-coil-helix-coiled-coil-helix domain containing 2 -0.0231587
XYLT1 xylosyltransferase I -0.0230775
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 -0.0227781
TRIM56 tripartite motif containing 56 -0.0226997
RPL23 ribosomal protein L23 -0.0226539
DHRSX dehydrogenase/reductase (SDR family) X-linked -0.0226001
TMEM132B transmembrane protein 132B -0.0225715
HIP1 huntingtin interacting protein 1 -0.0225327
MMP12 matrix metallopeptidase 12 -0.0224521