Folic acid_SW 1088 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Folic acid perturbation in SW 1088 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Folic acid_SW 1088 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
COL6A3 collagen, type VI, alpha 3 0.21201
ERRFI1 ERBB receptor feedback inhibitor 1 0.0956925
MYH9 myosin, heavy chain 9, non-muscle 0.0759859
EFNA5 ephrin-A5 0.0680107
NRXN3 neurexin 3 0.0646583
GLIS3 GLIS family zinc finger 3 0.0627465
TRIO trio Rho guanine nucleotide exchange factor 0.0567794
PSD3 pleckstrin and Sec7 domain containing 3 0.0566873
EGFR epidermal growth factor receptor 0.0559421
AHNAK AHNAK nucleoprotein 0.0544256
GSE1 Gse1 coiled-coil protein 0.0542192
SMYD3 SET and MYND domain containing 3 0.0532094
RUNX1 runt-related transcription factor 1 0.0509457
HMGA2 high mobility group AT-hook 2 0.0509332
PRELID2 PRELI domain containing 2 0.0507699
COL5A1 collagen, type V, alpha 1 0.045886
SETBP1 SET binding protein 1 0.0445071
LOXL2 lysyl oxidase-like 2 0.0438337
SMAD3 SMAD family member 3 0.0425785
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0424407
MACF1 microtubule-actin crosslinking factor 1 0.0422378
PTPN12 protein tyrosine phosphatase, non-receptor type 12 0.0421989
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.0384898
EXT1 exostosin glycosyltransferase 1 0.0374699
KLF7 Kruppel-like factor 7 (ubiquitous) 0.037311
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0370733
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0356784
FN1 fibronectin 1 0.0353697
IL6ST interleukin 6 signal transducer 0.0345666
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0340898
KYNU kynureninase 0.0337577
EXOC4 exocyst complex component 4 0.0332881
SPRED2 sprouty-related, EVH1 domain containing 2 0.0330453
JARID2 jumonji, AT rich interactive domain 2 0.0324612
GLS2 glutaminase 2 (liver, mitochondrial) 0.0323566
ATP13A3 ATPase type 13A3 0.0323413
PRICKLE2 prickle homolog 2 (Drosophila) 0.0314372
IGFBP3 insulin-like growth factor binding protein 3 0.0310677
SLC4A7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 0.0303805
CDH11 cadherin 11, type 2, OB-cadherin (osteoblast) 0.0297719
MEF2A myocyte enhancer factor 2A 0.0292448
BRIP1 BRCA1 interacting protein C-terminal helicase 1 0.0291789
BBS9 Bardet-Biedl syndrome 9 0.0291019
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0290918
SHB Src homology 2 domain containing adaptor protein B 0.0287458
TNS3 tensin 3 0.0286793
AUTS2 autism susceptibility candidate 2 0.0286399
FNDC3B fibronectin type III domain containing 3B 0.0285176
MAP1B microtubule-associated protein 1B 0.0284158
HIP1 huntingtin interacting protein 1 0.0283759
HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 0.0282266
MBD5 methyl-CpG binding domain protein 5 0.028018
FAM13A family with sequence similarity 13, member A 0.0277469
LOX lysyl oxidase 0.0276586
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.027658
HPCAL1 hippocalcin-like 1 0.0275677
USP34 ubiquitin specific peptidase 34 0.0265362
ZBTB20 zinc finger and BTB domain containing 20 0.0263855
PALM2AKAP2 PALM2 and AKAP2 fusion 0.0262606
MSN moesin 0.0261229
ELL2 elongation factor, RNA polymerase II, 2 0.0252723
MYCBP2 MYC binding protein 2, E3 ubiquitin protein ligase 0.0251263
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0245809
PTPRM protein tyrosine phosphatase, receptor type, M 0.0240309
DPYD dihydropyrimidine dehydrogenase 0.02377
SAMD4A sterile alpha motif domain containing 4A 0.0236427
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0236388
FBXL7 F-box and leucine-rich repeat protein 7 0.0235965
DNAH11 dynein, axonemal, heavy chain 11 0.0235635
NCOR2 nuclear receptor corepressor 2 0.0235621
CACNA1C calcium channel, voltage-dependent, L type, alpha 1C subunit 0.0234251
ANO6 anoctamin 6 0.0231265
VEGFC vascular endothelial growth factor C 0.0230134
ATXN1 ataxin 1 0.0225879
GFPT2 glutamine-fructose-6-phosphate transaminase 2 0.0225831
ALK anaplastic lymphoma receptor tyrosine kinase 0.022309
PDGFC platelet derived growth factor C 0.0222244
ACTN1 actinin, alpha 1 0.022101
NF1 neurofibromin 1 0.0219292
UBR5 ubiquitin protein ligase E3 component n-recognin 5 0.0219009
ASPH aspartate beta-hydroxylase 0.021793
DST dystonin 0.0214851
FMNL2 formin-like 2 0.0214661
VCL vinculin 0.0213771
ABLIM3 actin binding LIM protein family, member 3 0.0210898
ESYT2 extended synaptotagmin-like protein 2 0.0210648
PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 0.0210523
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 0.0208861
ZEB2 zinc finger E-box binding homeobox 2 0.0208631
CDK14 cyclin-dependent kinase 14 0.020636
PTPN14 protein tyrosine phosphatase, non-receptor type 14 0.0204245
HIPK2 homeodomain interacting protein kinase 2 0.0204175
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1 0.0203624
ANTXR2 anthrax toxin receptor 2 0.0203569
METTL15 methyltransferase like 15 0.0201167
RBMS1 RNA binding motif, single stranded interacting protein 1 0.0198622
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0195884
SSBP2 single-stranded DNA binding protein 2 0.0195677
STK17A serine/threonine kinase 17a 0.0195545
NRP1 neuropilin 1 0.0194221

decreased expression

Symbol Name Standardized Value
VIM vimentin -0.211395
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.171782
HLA-B major histocompatibility complex, class I, B -0.163909
MT2A metallothionein 2A -0.151056
TMSB10 thymosin beta 10 -0.150562
B2M beta-2-microglobulin -0.14001
FTL ferritin, light polypeptide -0.0999697
PTMA prothymosin, alpha -0.0988399
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0957223
SPARC secreted protein, acidic, cysteine-rich (osteonectin) -0.0905487
CXCL8 chemokine (C-X-C motif) ligand 8 -0.0821243
TMEM158 transmembrane protein 158 (gene/pseudogene) -0.0738304
TPT1 tumor protein, translationally-controlled 1 -0.0728326
POTEF POTE ankyrin domain family, member F -0.0557043
ENO1 enolase 1, (alpha) -0.0548683
MT1X metallothionein 1X -0.0543342
PDIA3 protein disulfide isomerase family A, member 3 -0.0481366
S100A9 S100 calcium binding protein A9 -0.0471376
LGALS1 lectin, galactoside-binding, soluble, 1 -0.0462859
TGFBI transforming growth factor, beta-induced, 68kDa -0.0459944
RPS6 ribosomal protein S6 -0.0453494
EIF1 eukaryotic translation initiation factor 1 -0.0443335
S100A6 S100 calcium binding protein A6 -0.0441536
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.044152
ACTG1 actin gamma 1 -0.0441087
VDAC1 voltage-dependent anion channel 1 -0.0440762
HLA-C major histocompatibility complex, class I, C -0.043793
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0400693
RPS8 ribosomal protein S8 -0.0390906
HLA-A major histocompatibility complex, class I, A -0.038337
SEPTIN7 septin 7 -0.0383031
RPL35A ribosomal protein L35a -0.0380146
GNAS GNAS complex locus -0.0377558
RPL37A ribosomal protein L37a -0.0374279
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.0364759
ADM adrenomedullin -0.036387
RPL31 ribosomal protein L31 -0.0356125
RPL36 ribosomal protein L36 -0.0350694
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 -0.0349629
GOLGA4 golgin A4 -0.0340603
RPLP1 ribosomal protein, large, P1 -0.034013
RPL15 ribosomal protein L15 -0.0335028
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0334627
LMNA lamin A/C -0.0330311
RPL11 ribosomal protein L11 -0.0328419
LDHA lactate dehydrogenase A -0.0324672
RPLP2 ribosomal protein, large, P2 -0.0315183
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0311444
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 -0.0306888
S100A10 S100 calcium binding protein A10 -0.0297398
RACK1 receptor for activated C kinase 1 -0.0296905
RRBP1 ribosome binding protein 1 -0.0295724
RPS27A ribosomal protein S27a -0.0292381
PKM pyruvate kinase, muscle -0.029048
TIMP1 TIMP metallopeptidase inhibitor 1 -0.0283027
RPS14 ribosomal protein S14 -0.0279467
CALM1 calmodulin 1 (phosphorylase kinase, delta) -0.0276653
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta -0.0276506
RPL34 ribosomal protein L34 -0.027575
PFN1 profilin 1 -0.0274492
RPS19 ribosomal protein S19 -0.0272137
RPS23 ribosomal protein S23 -0.0269835
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0268538
DSTN destrin (actin depolymerizing factor) -0.0267494
PPDPF pancreatic progenitor cell differentiation and proliferation factor -0.0265426
TUBA1B tubulin, alpha 1b -0.0262663
RPL12 ribosomal protein L12 -0.0255914
RPS12 ribosomal protein S12 -0.0251435
ATF4 activating transcription factor 4 -0.0246632
UBC ubiquitin C -0.0244659
RPL26 ribosomal protein L26 -0.0243385
PLOD1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 -0.0241982
CHCHD2 coiled-coil-helix-coiled-coil-helix domain containing 2 -0.0241421
PSMA7 proteasome (prosome, macropain) subunit, alpha type, 7 -0.024085
LOC102724023 ES1 protein homolog, mitochondrial -0.0240568
PTP4A2 protein tyrosine phosphatase type IVA, member 2 -0.0238297
CALR calreticulin -0.0236846
MYADM myeloid-associated differentiation marker -0.0235428
RPS25 ribosomal protein S25 -0.0234481
RPL19 ribosomal protein L19 -0.0233898
RPS13 ribosomal protein S13 -0.0233703
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0231391
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.0228678
RPL37 ribosomal protein L37 -0.0228437
CD63 CD63 molecule -0.0227991
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0227763
TMSB4X thymosin beta 4, X-linked -0.0227515
SERF2 small EDRK-rich factor 2 -0.0226585
RPS21 ribosomal protein S21 -0.0225468
TIMP3 TIMP metallopeptidase inhibitor 3 -0.0224735
RPL32 ribosomal protein L32 -0.0224034
HM13 histocompatibility (minor) 13 -0.0220194
RPLP0 ribosomal protein, large, P0 -0.021703
PDIA6 protein disulfide isomerase family A, member 6 -0.021376
PRSS23 protease, serine, 23 -0.0213176
CAVIN1 caveolae associated protein 1 -0.0212118
CIRSR corepressor of RBPJ and splicing regulator -0.021114
KPNB1 karyopherin (importin) beta 1 -0.0211128
RSL1D1 ribosomal L1 domain containing 1 -0.0210372
ATP5F1E ATP synthase F1 subunit epsilon -0.0210343