Fumaric acid_AN3 CA Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Fumaric acid perturbation in AN3 CA cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Fumaric acid_AN3 CA drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
TMSB4X thymosin beta 4, X-linked 0.145403
VEGFA vascular endothelial growth factor A 0.129208
EEF2 eukaryotic translation elongation factor 2 0.105242
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0958078
MEST mesoderm specific transcript 0.0874167
RPL3 ribosomal protein L3 0.0754832
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0685175
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0634776
COL1A2 collagen, type I, alpha 2 0.0609049
LOC112694756 uncharaterized LOC112694756 0.0594913
SFTPA2 surfactant protein A2 0.0501292
DBN1 drebrin 1 0.0491743
NONO non-POU domain containing, octamer-binding 0.0486106
TNIP1 TNFAIP3 interacting protein 1 0.0481954
SRRM2 serine/arginine repetitive matrix 2 0.0455474
CALR calreticulin 0.045194
MGP matrix Gla protein 0.0412012
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 0.0399864
NCOR2 nuclear receptor corepressor 2 0.039826
CAPRIN1 cell cycle associated protein 1 0.0390041
RPL4 ribosomal protein L4 0.0385572
HNRNPD heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) 0.0378843
KAZN kazrin, periplakin interacting protein 0.0375089
HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 0.0365021
RBM39 RNA binding motif protein 39 0.036489
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 0.0346989
GSE1 Gse1 coiled-coil protein 0.0339443
H1-2 H1.2 linker histone, cluster member 0.0335867
MYH9 myosin, heavy chain 9, non-muscle 0.0335774
H1-4 H1.4 linker histone, cluster member 0.0335494
FGFR2 fibroblast growth factor receptor 2 0.033376
RPS4X ribosomal protein S4, X-linked 0.0327417
ARID1A AT rich interactive domain 1A (SWI-like) 0.0327124
NUMA1 nuclear mitotic apparatus protein 1 0.0323393
DOCK1 dedicator of cytokinesis 1 0.0315925
FUS FUS RNA binding protein 0.0314958
CEP250 centrosomal protein 250kDa 0.0313886
RAD21 RAD21 homolog (S. pombe) 0.0307189
SET SET nuclear proto-oncogene 0.0306926
PLEC plectin 0.0305835
SF3B1 splicing factor 3b, subunit 1, 155kDa 0.0303222
LUC7L3 LUC7-like 3 (S. cerevisiae) 0.0300181
BCOR BCL6 corepressor 0.0298787
PTTG1IP pituitary tumor-transforming 1 interacting protein 0.0298574
RACK1 receptor for activated C kinase 1 0.0297998
HYOU1 hypoxia up-regulated 1 0.0295284
PRRC2A proline-rich coiled-coil 2A 0.0292265
YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma 0.0291785
TOP2B topoisomerase (DNA) II beta 180kDa 0.0290225
OGA O-GlcNAcase 0.0289708
RBM33 RNA binding motif protein 33 0.0288134
YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta 0.0273473
EIF4H eukaryotic translation initiation factor 4H 0.0272071
HOXC6 homeobox C6 0.0270659
CHD3 chromodomain helicase DNA binding protein 3 0.0269384
SREK1 splicing regulatory glutamine/lysine-rich protein 1 0.0264614
MACF1 microtubule-actin crosslinking factor 1 0.0262289
HSPA8 heat shock 70kDa protein 8 0.02611
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.0260381
MIDEAS mitotic deacetylase associated SANT domain protein 0.0260105
INCENP inner centromere protein antigens 135/155kDa 0.0259376
EEF1G eukaryotic translation elongation factor 1 gamma 0.0256522
EWSR1 EWS RNA-binding protein 1 0.0253511
APBB2 amyloid beta (A4) precursor protein-binding, family B, member 2 0.0253388
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0251504
DDIT4 DNA-damage-inducible transcript 4 0.0250752
ATG5 autophagy related 5 0.0249758
PNN pinin, desmosome associated protein 0.0249437
DHRS3 dehydrogenase/reductase (SDR family) member 3 0.024833
CNBP CCHC-type zinc finger, nucleic acid binding protein 0.0246978
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0244654
RPL13A ribosomal protein L13a 0.0244348
HOXA3 homeobox A3 0.0236613
PLCG1 phospholipase C, gamma 1 0.0234564
SGCE sarcoglycan, epsilon 0.023051
SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 0.0230249
PER1 period circadian clock 1 0.022993
TUBB tubulin, beta class I 0.0229709
SPAG5 sperm associated antigen 5 0.0229487
TP53BP1 tumor protein p53 binding protein 1 0.0225943
MARCHF6 membrane associated ring-CH-type finger 6 0.0225931
CNN3 calponin 3, acidic 0.0225024
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa 0.0223987
EYA1 EYA transcriptional coactivator and phosphatase 1 0.0223681
SNX3 sorting nexin 3 0.0223559
MINK1 misshapen-like kinase 1 0.0222728
RSRC2 arginine/serine-rich coiled-coil 2 0.0220123
RPL37 ribosomal protein L37 0.0217731
GTF3C1 general transcription factor IIIC, polypeptide 1, alpha 220kDa 0.0217355
DDX41 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 0.0216681
TRIP12 thyroid hormone receptor interactor 12 0.0216403
FAM120B family with sequence similarity 120B 0.0214926
SEPTIN2 septin 2 0.0213348
SPTY2D1 SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae) 0.0213045
BTAF1 BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa 0.0212546
SUPT5H suppressor of Ty 5 homolog (S. cerevisiae) 0.0212472
SQSTM1 sequestosome 1 0.0212046
RPL11 ribosomal protein L11 0.021156
EIF3E eukaryotic translation initiation factor 3, subunit E 0.0210045
OS9 osteosarcoma amplified 9, endoplasmic reticulum lectin 0.0208817

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.201986
PRKG1 protein kinase, cGMP-dependent, type I -0.173055
HMGA2 high mobility group AT-hook 2 -0.11047
VIM vimentin -0.0924173
CADM2 cell adhesion molecule 2 -0.0893967
JMJD1C jumonji domain containing 1C -0.0854964
IER3 immediate early response 3 -0.0725562
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0680399
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0638828
IGF2 insulin-like growth factor 2 -0.0610391
MKLN1 muskelin 1, intracellular mediator containing kelch motifs -0.0582186
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 -0.0565546
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0563925
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0543956
RAB7A RAB7A, member RAS oncogene family -0.0486949
TRIO trio Rho guanine nucleotide exchange factor -0.0473361
MYOF myoferlin -0.0468589
GMDS GDP-mannose 4,6-dehydratase -0.0461571
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0457408
SBF2 SET binding factor 2 -0.044906
ANKHD1 ankyrin repeat and KH domain containing 1 -0.0445715
NIPBL Nipped-B homolog (Drosophila) -0.0442097
HMGA1 high mobility group AT-hook 1 -0.0430314
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0420314
RPS6 ribosomal protein S6 -0.0418983
MSRB3 methionine sulfoxide reductase B3 -0.0416844
TULP4 tubby like protein 4 -0.040566
TSC22D1 TSC22 domain family, member 1 -0.0404135
SLC38A2 solute carrier family 38, member 2 -0.0402944
PDE4B phosphodiesterase 4B, cAMP-specific -0.039485
CDK13 cyclin-dependent kinase 13 -0.0387046
BMPR1A bone morphogenetic protein receptor, type IA -0.0385773
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0383874
PDE4D phosphodiesterase 4D, cAMP-specific -0.0372169
NAP1L1 nucleosome assembly protein 1-like 1 -0.0357158
CBFB core-binding factor, beta subunit -0.0347596
PHF3 PHD finger protein 3 -0.0337598
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 -0.0336901
MYCBP2 MYC binding protein 2, E3 ubiquitin protein ligase -0.0336238
HMGB1 high mobility group box 1 -0.0329709
CCNI cyclin I -0.0328484
PUM2 pumilio RNA-binding family member 2 -0.0323482
FBXO11 F-box protein 11 -0.0321482
PARD3 par-3 family cell polarity regulator -0.0317482
ZFAND3 zinc finger, AN1-type domain 3 -0.0314394
TPT1 tumor protein, translationally-controlled 1 -0.0309963
SPDYA speedy/RINGO cell cycle regulator family member A -0.0309553
CENPF centromere protein F, 350/400kDa -0.0305362
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0304707
TIAM2 T-cell lymphoma invasion and metastasis 2 -0.0302062
WASF2 WAS protein family, member 2 -0.0302043
INTS6 integrator complex subunit 6 -0.0299202
BAZ1A bromodomain adjacent to zinc finger domain, 1A -0.0297399
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.0295593
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) -0.0292964
CTBP2 C-terminal binding protein 2 -0.0291049
FNDC3B fibronectin type III domain containing 3B -0.0290102
MAP4 microtubule-associated protein 4 -0.0289104
OSBPL8 oxysterol binding protein-like 8 -0.0285868
FBXL2 F-box and leucine-rich repeat protein 2 -0.0284105
KTN1 kinectin 1 (kinesin receptor) -0.0283481
ZNF207 zinc finger protein 207 -0.027985
STRN3 striatin, calmodulin binding protein 3 -0.0276811
RPS23 ribosomal protein S23 -0.0275121
CDK6 cyclin-dependent kinase 6 -0.027466
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 -0.0271601
COL5A2 collagen, type V, alpha 2 -0.0271485
USP15 ubiquitin specific peptidase 15 -0.0271323
WAC WW domain containing adaptor with coiled-coil -0.027105
AK1 adenylate kinase 1 -0.0270069
RSF1 remodeling and spacing factor 1 -0.0269749
TCF12 transcription factor 12 -0.0267681
RPS8 ribosomal protein S8 -0.0267522
FBXW7 F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase -0.026699
ZFR zinc finger RNA binding protein -0.0266778
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0264921
TET1 tet methylcytosine dioxygenase 1 -0.0263815
CDKAL1 CDK5 regulatory subunit associated protein 1-like 1 -0.0262066
ADIPOR2 adiponectin receptor 2 -0.0261794
CENPE centromere protein E, 312kDa -0.0259273
BRAF B-Raf proto-oncogene, serine/threonine kinase -0.0258768
PAN3 PAN3 poly(A) specific ribonuclease subunit -0.0258622
TUT4 terminal uridylyl transferase 4 -0.025748
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0257094
ARHGAP12 Rho GTPase activating protein 12 -0.0256497
ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) -0.0256455
USP47 ubiquitin specific peptidase 47 -0.025517
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive -0.025469
CUX1 cut-like homeobox 1 -0.0254557
CDC73 cell division cycle 73 -0.0253592
ANO6 anoctamin 6 -0.0253456
KLHL24 kelch-like family member 24 -0.0251072
EFNA5 ephrin-A5 -0.0250938
VTI1A vesicle transport through interaction with t-SNAREs 1A -0.0250386
MICU1 mitochondrial calcium uptake 1 -0.0250251
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0246996
AGO3 argonaute RISC catalytic component 3 -0.0246177
RREB1 ras responsive element binding protein 1 -0.0245591
RANBP17 RAN binding protein 17 -0.0244721
ZFP36L1 ZFP36 ring finger protein-like 1 -0.0244187