Fumaric acid_CFPAC-1 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Fumaric acid perturbation in CFPAC-1 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Fumaric acid_CFPAC-1 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
MYH9 myosin, heavy chain 9, non-muscle 0.138522
NDRG1 N-myc downstream regulated 1 0.136245
APOL1 apolipoprotein L, 1 0.13453
IGFBP3 insulin-like growth factor binding protein 3 0.124701
LOC112694756 uncharaterized LOC112694756 0.120123
HLA-B major histocompatibility complex, class I, B 0.116509
HLA-A major histocompatibility complex, class I, A 0.11416
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.106545
SMAD3 SMAD family member 3 0.105118
TMSB4X thymosin beta 4, X-linked 0.0968116
TNIP1 TNFAIP3 interacting protein 1 0.0910312
PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 0.0775887
TGM2 transglutaminase 2 0.0763394
PLAU plasminogen activator, urokinase 0.0746066
HLA-C major histocompatibility complex, class I, C 0.0706155
VEGFA vascular endothelial growth factor A 0.0689052
APP amyloid beta (A4) precursor protein 0.0684609
B2M beta-2-microglobulin 0.0676915
PTTG1IP pituitary tumor-transforming 1 interacting protein 0.0664743
PLEC plectin 0.0644415
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0600734
KRT8 keratin 8, type II 0.0599134
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0579876
LAMB3 laminin, beta 3 0.0571004
FHIP1A FHF complex subunit HOOK interacting protein 1A 0.0564123
PGK1 phosphoglycerate kinase 1 0.0564016
APLP2 amyloid beta (A4) precursor-like protein 2 0.0563852
PPARD peroxisome proliferator-activated receptor delta 0.0555398
ANXA11 annexin A11 0.0527596
SEMA4B sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 0.052004
APOL2 apolipoprotein L, 2 0.0501732
FLNB filamin B, beta 0.0463588
RPL3 ribosomal protein L3 0.0462849
SAMD4A sterile alpha motif domain containing 4A 0.0444865
BACE2 beta-site APP-cleaving enzyme 2 0.0428441
EZR ezrin 0.0421467
SRRM2 serine/arginine repetitive matrix 2 0.0421096
ANKRD11 ankyrin repeat domain 11 0.041405
LASP1 LIM and SH3 protein 1 0.0391304
PFKP phosphofructokinase, platelet 0.0383112
PLAUR plasminogen activator, urokinase receptor 0.0377993
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0376708
OPTN optineurin 0.0375499
AHNAK2 AHNAK nucleoprotein 2 0.0374926
MACF1 microtubule-actin crosslinking factor 1 0.0373904
AKAP12 A kinase (PRKA) anchor protein 12 0.0371218
NCOR2 nuclear receptor corepressor 2 0.0370567
SLC5A3 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 0.0361044
QSOX1 quiescin Q6 sulfhydryl oxidase 1 0.0359281
NIBAN2 niban apoptosis regulator 2 0.0358607
HPCAL1 hippocalcin-like 1 0.0355609
NFKBIZ nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta 0.0353788
NONO non-POU domain containing, octamer-binding 0.0352575
BCL2L1 BCL2-like 1 0.035093
KRT19 keratin 19, type I 0.0350808
KIRREL1 kirre like nephrin family adhesion molecule 1 0.0346913
GRB10 growth factor receptor-bound protein 10 0.034529
RBPJ recombination signal binding protein for immunoglobulin kappa J region 0.0343306
PRPF38B pre-mRNA processing factor 38B 0.0341487
F3 coagulation factor III (thromboplastin, tissue factor) 0.0337801
CIB1 calcium and integrin binding 1 (calmyrin) 0.0337107
MCL1 myeloid cell leukemia 1 0.0336035
ACTG1 actin gamma 1 0.0329695
BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 0.0327803
ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) 0.0326563
ADAM8 ADAM metallopeptidase domain 8 0.0323696
HSPG2 heparan sulfate proteoglycan 2 0.0319519
EEF2 eukaryotic translation elongation factor 2 0.0314197
NUMA1 nuclear mitotic apparatus protein 1 0.0310261
TMEM51 transmembrane protein 51 0.0309879
HRNR hornerin 0.030706
MED15 mediator complex subunit 15 0.030689
CEP250 centrosomal protein 250kDa 0.0304313
ENO1 enolase 1, (alpha) 0.0303126
CD74 CD74 molecule, major histocompatibility complex, class II invariant chain 0.0297808
JUN jun proto-oncogene 0.0296164
CMIP c-Maf inducing protein 0.0294832
ESYT2 extended synaptotagmin-like protein 2 0.0288511
SPAG9 sperm associated antigen 9 0.0287527
HSPA8 heat shock 70kDa protein 8 0.0281993
FOSL1 FOS-like antigen 1 0.0279008
MXD1 MAX dimerization protein 1 0.0276971
RPL4 ribosomal protein L4 0.0273512
BRD2 bromodomain containing 2 0.0271559
PKM pyruvate kinase, muscle 0.0271415
LDHA lactate dehydrogenase A 0.0269097
SEMA7A semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group) 0.0268303
FLNA filamin A, alpha 0.0267119
TINAGL1 tubulointerstitial nephritis antigen-like 1 0.0266075
DOCK5 dedicator of cytokinesis 5 0.026448
INSIG2 insulin induced gene 2 0.0263929
HLA-E major histocompatibility complex, class I, E 0.0261255
WDR45B WD repeat domain 45B 0.026047
CLMN calmin (calponin-like, transmembrane) 0.0259781
AKAP13 A kinase (PRKA) anchor protein 13 0.0259447
MUC1 mucin 1, cell surface associated 0.0257212
CAP1 CAP, adenylate cyclase-associated protein 1 (yeast) 0.0256522
CNOT12 CCR4-NOT transcription complex subunit 12 0.0255035
BCL9L B-cell CLL/lymphoma 9-like 0.0254266
SEPTIN9 septin 9 0.0252009

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.211027
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.192189
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.112016
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0728674
ANXA2 annexin A2 -0.0672083
ALCAM activated leukocyte cell adhesion molecule -0.0659225
PTMA prothymosin, alpha -0.0621561
TPT1 tumor protein, translationally-controlled 1 -0.0561084
PDIA3 protein disulfide isomerase family A, member 3 -0.0540324
HMGA1 high mobility group AT-hook 1 -0.0533144
TM4SF1 transmembrane 4 L six family member 1 -0.0503478
MMP7 matrix metallopeptidase 7 -0.0491817
FUT8 fucosyltransferase 8 (alpha (1,6) fucosyltransferase) -0.0473145
FTL ferritin, light polypeptide -0.0464965
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0447808
CANX calnexin -0.0403609
RAB1A RAB1A, member RAS oncogene family -0.0396107
GNAS GNAS complex locus -0.0377986
RPLP1 ribosomal protein, large, P1 -0.0373708
H1-0 H1.0 linker histone -0.0359996
WSB1 WD repeat and SOCS box containing 1 -0.0348418
PDE4D phosphodiesterase 4D, cAMP-specific -0.0344722
AHNAK AHNAK nucleoprotein -0.0340967
DTNA dystrobrevin, alpha -0.0338341
EFNA5 ephrin-A5 -0.0338206
DSG2 desmoglein 2 -0.0328003
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.032305
LMO7 LIM domain 7 -0.0322744
C15ORF48 chromosome 15 open reading frame 48 -0.0319031
AP3B1 adaptor-related protein complex 3, beta 1 subunit -0.0316475
TXNIP thioredoxin interacting protein -0.0306064
IER3 immediate early response 3 -0.0300845
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0298246
ARHGAP26 Rho GTPase activating protein 26 -0.0293518
PARP14 poly (ADP-ribose) polymerase family, member 14 -0.0292627
ITGA6 integrin, alpha 6 -0.0292365
EREG epiregulin -0.0287552
TMEM263 transmembrane protein 263 -0.0283654
TOP1 topoisomerase (DNA) I -0.0281374
MAP1B microtubule-associated protein 1B -0.0279896
PDIA4 protein disulfide isomerase family A, member 4 -0.027502
RTN4 reticulon 4 -0.027377
EPS8 epidermal growth factor receptor pathway substrate 8 -0.0273334
IFI16 interferon, gamma-inducible protein 16 -0.0270954
STAU1 staufen double-stranded RNA binding protein 1 -0.0269625
VIM vimentin -0.0268541
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 -0.0256241
PARD3 par-3 family cell polarity regulator -0.0251899
COG5 component of oligomeric golgi complex 5 -0.0248671
CCNI cyclin I -0.0248073
RPS24 ribosomal protein S24 -0.0246687
ARID4B AT rich interactive domain 4B (RBP1-like) -0.024495
BZW1 basic leucine zipper and W2 domains 1 -0.0244808
GARS1 glycyl-tRNA synthetase 1 -0.024318
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0242904
LRBA LPS-responsive vesicle trafficking, beach and anchor containing -0.024172
KDM5B lysine (K)-specific demethylase 5B -0.0241596
PDIA6 protein disulfide isomerase family A, member 6 -0.0240779
ARHGAP12 Rho GTPase activating protein 12 -0.0235782
NRP1 neuropilin 1 -0.023506
RAB3GAP1 RAB3 GTPase activating protein subunit 1 (catalytic) -0.0234857
DDX60L DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like -0.0234419
TMEM123 transmembrane protein 123 -0.0233883
IRF2BP2 interferon regulatory factor 2 binding protein 2 -0.0230473
LY6E lymphocyte antigen 6 complex, locus E -0.0229147
NRG3 neuregulin 3 -0.0228704
SLC38A1 solute carrier family 38, member 1 -0.0227786
YME1L1 YME1-like 1 ATPase -0.0224168
RPS25 ribosomal protein S25 -0.0222545
CXCL8 chemokine (C-X-C motif) ligand 8 -0.0220715
RPL19 ribosomal protein L19 -0.0218245
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa -0.0217985
MBNL1 muscleblind-like splicing regulator 1 -0.0217809
KYNU kynureninase -0.0216787
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0215337
COPB2 coatomer protein complex, subunit beta 2 (beta prime) -0.0213803
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0213548
EIF2A eukaryotic translation initiation factor 2A, 65kDa -0.0212629
NFE2L2 nuclear factor, erythroid 2-like 2 -0.0211366
GPHN gephyrin -0.0209862
RICTOR RPTOR independent companion of MTOR, complex 2 -0.0208312
NEK7 NIMA-related kinase 7 -0.0207124
NABP1 nucleic acid binding protein 1 -0.0206017
SH3KBP1 SH3-domain kinase binding protein 1 -0.0205963
GOLGA4 golgin A4 -0.0205109
SEC24A SEC24 family member A -0.0204516
NT5C2 5'-nucleotidase, cytosolic II -0.0204337
SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 -0.0203606
SLC6A14 solute carrier family 6 (amino acid transporter), member 14 -0.0202027
SYNE2 spectrin repeat containing, nuclear envelope 2 -0.0201178
USP34 ubiquitin specific peptidase 34 -0.0198351
RPS6 ribosomal protein S6 -0.0192648
PCDH7 protocadherin 7 -0.0190146
PPIB peptidylprolyl isomerase B (cyclophilin B) -0.0188389
TCEA1 transcription elongation factor A (SII), 1 -0.0188254
MT1X metallothionein 1X -0.018678
GLS2 glutaminase 2 (liver, mitochondrial) -0.0185287
LMAN1 lectin, mannose-binding, 1 -0.0184358
SP100 SP100 nuclear antigen -0.0184297
CATSPERB catsper channel auxiliary subunit beta -0.0183695