Fumaric acid_HCT15 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Fumaric acid perturbation in HCT15 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Fumaric acid_HCT15 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
LOC112694756 uncharaterized LOC112694756 0.126752
KRT8 keratin 8, type II 0.124239
EEF2 eukaryotic translation elongation factor 2 0.117498
KRT18 keratin 18, type I 0.0656122
PLEC plectin 0.0631758
RAD51B RAD51 paralog B 0.0620503
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0575228
ZNF292 zinc finger protein 292 0.0572903
TXNRD1 thioredoxin reductase 1 0.0550573
NQO1 NAD(P)H dehydrogenase, quinone 1 0.0538507
RPLP1 ribosomal protein, large, P1 0.051284
RPL35A ribosomal protein L35a 0.0500445
HNRNPD heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) 0.0500252
EIF1 eukaryotic translation initiation factor 1 0.0497105
RPL23 ribosomal protein L23 0.0476559
NUMA1 nuclear mitotic apparatus protein 1 0.0473907
YBX1 Y box binding protein 1 0.0471759
MLEC malectin 0.0470041
RPL4 ribosomal protein L4 0.045702
SND1 staphylococcal nuclease and tudor domain containing 1 0.0448136
SRRM2 serine/arginine repetitive matrix 2 0.0431713
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0403297
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.0400425
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.0394644
EIF4H eukaryotic translation initiation factor 4H 0.0393744
PRELID2 PRELI domain containing 2 0.0392292
RPLP0 ribosomal protein, large, P0 0.0382666
DDIT4 DNA-damage-inducible transcript 4 0.0380752
EIF4A1 eukaryotic translation initiation factor 4A1 0.0377894
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa 0.0377151
RPL37 ribosomal protein L37 0.0376877
GOLGA3 golgin A3 0.037241
RPL3 ribosomal protein L3 0.0368804
CALR calreticulin 0.0368477
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 0.0362068
DDX39B DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 0.036114
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.0361133
EGLN1 egl-9 family hypoxia-inducible factor 1 0.0354539
SEPTIN2 septin 2 0.0351294
RPL26 ribosomal protein L26 0.0347564
TMSB10 thymosin beta 10 0.0346826
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0342981
GANAB glucosidase, alpha; neutral AB 0.0340407
HYOU1 hypoxia up-regulated 1 0.0339914
LASP1 LIM and SH3 protein 1 0.0339278
PCNT pericentrin 0.0337471
UBR4 ubiquitin protein ligase E3 component n-recognin 4 0.0337196
LENG8 leukocyte receptor cluster (LRC) member 8 0.0333697
FTL ferritin, light polypeptide 0.0333016
FHIP1A FHF complex subunit HOOK interacting protein 1A 0.0328595
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0322921
TOMM20 translocase of outer mitochondrial membrane 20 homolog (yeast) 0.0322094
PMM2 phosphomannomutase 2 0.0318465
PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 0.0316926
ANKRD11 ankyrin repeat domain 11 0.0316548
TBC1D22A TBC1 domain family, member 22A 0.0314965
MYH9 myosin, heavy chain 9, non-muscle 0.0310031
SAMD4A sterile alpha motif domain containing 4A 0.0308738
INSIG2 insulin induced gene 2 0.0302968
SEC61A1 Sec61 alpha 1 subunit (S. cerevisiae) 0.0298184
USP9X ubiquitin specific peptidase 9, X-linked 0.0297853
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.0295836
SREBF2 sterol regulatory element binding transcription factor 2 0.0295058
SEMA3B sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B 0.0294178
NONO non-POU domain containing, octamer-binding 0.0289133
FNDC3B fibronectin type III domain containing 3B 0.0288529
COPB2 coatomer protein complex, subunit beta 2 (beta prime) 0.028772
RPS4X ribosomal protein S4, X-linked 0.0287252
KAZN kazrin, periplakin interacting protein 0.0286255
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 0.02824
FAM117B family with sequence similarity 117, member B 0.0276797
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0272744
RAD23B RAD23 homolog B (S. cerevisiae) 0.0272193
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0271885
DDB1 damage-specific DNA binding protein 1, 127kDa 0.0271259
MORF4L1 mortality factor 4 like 1 0.0269969
KHNYN KH and NYN domain containing 0.0269905
RPL8 ribosomal protein L8 0.026737
RPS9 ribosomal protein S9 0.0264844
RERE arginine-glutamic acid dipeptide (RE) repeats 0.0263781
CSDE1 cold shock domain containing E1, RNA-binding 0.0263201
RNMT RNA (guanine-7-) methyltransferase 0.0261773
MED15 mediator complex subunit 15 0.0261703
WDR45B WD repeat domain 45B 0.0261515
MINK1 misshapen-like kinase 1 0.0259912
PGK1 phosphoglycerate kinase 1 0.025951
APOL2 apolipoprotein L, 2 0.0259452
SF1 splicing factor 1 0.0258779
PLXNA3 plexin A3 0.0258009
ZNF516 zinc finger protein 516 0.0256581
MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 0.025398
NFXL1 nuclear transcription factor, X-box binding-like 1 0.0252503
FUS FUS RNA binding protein 0.0250445
GRB10 growth factor receptor-bound protein 10 0.0250358
CTDSP2 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 0.0249246
OBSCN obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF 0.0249178
HDLBP high density lipoprotein binding protein 0.0247236
CNOT12 CCR4-NOT transcription complex subunit 12 0.0244125
RPS19 ribosomal protein S19 0.0243042
RAB6A RAB6A, member RAS oncogene family 0.0241882

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.250283
AHNAK AHNAK nucleoprotein -0.111741
PATJ PATJ crumbs cell polarity complex component -0.0928345
NDRG1 N-myc downstream regulated 1 -0.0827326
ERRFI1 ERBB receptor feedback inhibitor 1 -0.0747772
INTS6 integrator complex subunit 6 -0.0739446
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.0729621
PKM pyruvate kinase, muscle -0.0716058
VCL vinculin -0.0676892
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0654201
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 -0.0642133
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive -0.0630505
RPS2 ribosomal protein S2 -0.0621838
MCL1 myeloid cell leukemia 1 -0.0585381
POTEF POTE ankyrin domain family, member F -0.0532813
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0525975
CLTC clathrin, heavy chain (Hc) -0.0512385
ASPH aspartate beta-hydroxylase -0.0482925
SLC38A2 solute carrier family 38, member 2 -0.0474879
SERINC5 serine incorporator 5 -0.0474511
CDCP1 CUB domain containing protein 1 -0.0471881
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.0468088
TPM4 tropomyosin 4 -0.0456989
VMP1 vacuole membrane protein 1 -0.045537
PAPOLA poly(A) polymerase alpha -0.0450861
SERPINB1 serpin peptidase inhibitor, clade B (ovalbumin), member 1 -0.0446898
DSG2 desmoglein 2 -0.0446698
SP100 SP100 nuclear antigen -0.0421225
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0418263
ANKHD1 ankyrin repeat and KH domain containing 1 -0.0402738
GOLGB1 golgin B1 -0.0398606
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.039817
APLP2 amyloid beta (A4) precursor-like protein 2 -0.0389039
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 -0.0387102
SPTBN1 spectrin, beta, non-erythrocytic 1 -0.0386084
MKI67 marker of proliferation Ki-67 -0.0376635
JMJD1C jumonji domain containing 1C -0.0372225
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 -0.0371923
EGR1 early growth response 1 -0.0368232
COPB1 coatomer protein complex, subunit beta 1 -0.0362052
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like -0.0354991
AGO3 argonaute RISC catalytic component 3 -0.0351081
TRIP12 thyroid hormone receptor interactor 12 -0.0348999
SNX14 sorting nexin 14 -0.0348027
SLCO1B3 solute carrier organic anion transporter family, member 1B3 -0.0343978
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.033989
DSCAM Down syndrome cell adhesion molecule -0.0339442
CRK v-crk avian sarcoma virus CT10 oncogene homolog -0.0338507
ARID4B AT rich interactive domain 4B (RBP1-like) -0.033742
UGDH UDP-glucose 6-dehydrogenase -0.0335679
LRRC23 leucine rich repeat containing 23 -0.032825
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0315196
GLG1 golgi glycoprotein 1 -0.0313078
AP3B1 adaptor-related protein complex 3, beta 1 subunit -0.0311282
WASF2 WAS protein family, member 2 -0.0308853
ERC2 ELKS/RAB6-interacting/CAST family member 2 -0.0307946
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0303285
CEMIP2 cell migration inducing hyaluronidase 2 -0.030181
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0299674
DSPP dentin sialophosphoprotein -0.0296908
MYOF myoferlin -0.0293659
SLCO1B3-SLCO1B7 SLCO1B3-SLCO1B7 readthrough -0.0292994
LRPPRC leucine-rich pentatricopeptide repeat containing -0.029224
ANKRD17 ankyrin repeat domain 17 -0.0290925
RAB10 RAB10, member RAS oncogene family -0.029078
RCOR1 REST corepressor 1 -0.0288704
MYO9A myosin IXA -0.0285598
GPHN gephyrin -0.0284859
TASOR2 transcription activation suppressor family member 2 -0.0282428
PARD6B par-6 family cell polarity regulator beta -0.0281549
CUX1 cut-like homeobox 1 -0.0281519
SOS1 son of sevenless homolog 1 (Drosophila) -0.0281481
KDM2A lysine (K)-specific demethylase 2A -0.0281142
ARRDC4 arrestin domain containing 4 -0.0280571
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0278887
PLAUR plasminogen activator, urokinase receptor -0.0277815
SLC5A3 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 -0.0277725
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.0276083
SRSF4 serine/arginine-rich splicing factor 4 -0.0275312
TGFB1 transforming growth factor, beta 1 -0.0274542
SIPA1L1 signal-induced proliferation-associated 1 like 1 -0.027398
DENND4C DENN/MADD domain containing 4C -0.0271974
ERBIN erbb2 interacting protein -0.0267356
UTRN utrophin -0.0267272
MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 -0.0266941
PERP PERP, TP53 apoptosis effector -0.0265425
RTN3 reticulon 3 -0.0264692
NIPBL Nipped-B homolog (Drosophila) -0.026185
RHPN2 rhophilin, Rho GTPase binding protein 2 -0.0260083
CENPF centromere protein F, 350/400kDa -0.0259315
USP53 ubiquitin specific peptidase 53 -0.0258794
NCKAP1 NCK-associated protein 1 -0.0258214
ANXA3 annexin A3 -0.0255006
KLF6 Kruppel-like factor 6 -0.0253588
NKTR natural killer cell triggering receptor -0.0252724
DLC1 DLC1 Rho GTPase activating protein -0.0251441
RIC1 RAB6A GEF complex partner 1 -0.0250701
DIAPH2 diaphanous-related formin 2 -0.025047
WAC WW domain containing adaptor with coiled-coil -0.0248658
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa -0.0248395