Fumaric acid_HepG2/C3A Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Fumaric acid perturbation in HepG2/C3A cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Fumaric acid_HepG2/C3A drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.257272
EEF2 eukaryotic translation elongation factor 2 0.130986
DDIT4 DNA-damage-inducible transcript 4 0.111751
VEGFA vascular endothelial growth factor A 0.111275
RPL3 ribosomal protein L3 0.0925135
MYH9 myosin, heavy chain 9, non-muscle 0.0918447
BHLHE40 basic helix-loop-helix family, member e40 0.0865685
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0855572
MT2A metallothionein 2A 0.0807768
PTTG1IP pituitary tumor-transforming 1 interacting protein 0.0741807
AFDN afadin, adherens junction formation factor 0.0714027
SDC4 syndecan 4 0.0644918
KRT8 keratin 8, type II 0.0643917
LOC112694756 uncharaterized LOC112694756 0.063662
RPL11 ribosomal protein L11 0.0622779
TNS1 tensin 1 0.0598262
NDRG1 N-myc downstream regulated 1 0.0595067
SRRM2 serine/arginine repetitive matrix 2 0.0530577
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0528823
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.051643
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0503387
TNIP1 TNFAIP3 interacting protein 1 0.0503277
PLEC plectin 0.0490358
KDM3A lysine (K)-specific demethylase 3A 0.0473161
RPL37A ribosomal protein L37a 0.046251
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0448757
FNDC3B fibronectin type III domain containing 3B 0.0445183
INSIG2 insulin induced gene 2 0.0437923
MACF1 microtubule-actin crosslinking factor 1 0.0437678
IGFBP1 insulin-like growth factor binding protein 1 0.0431047
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.040477
TRIO trio Rho guanine nucleotide exchange factor 0.0404031
RPL23 ribosomal protein L23 0.0398818
BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 0.0379892
CAMTA1 calmodulin binding transcription activator 1 0.0377031
LDHA lactate dehydrogenase A 0.0372292
EFNA1 ephrin-A1 0.0371896
HOOK2 hook microtubule-tethering protein 2 0.0371531
ERRFI1 ERBB receptor feedback inhibitor 1 0.0366137
EEF1G eukaryotic translation elongation factor 1 gamma 0.036427
PGK1 phosphoglycerate kinase 1 0.0360055
FHIP1A FHF complex subunit HOOK interacting protein 1A 0.035521
CLTB clathrin, light chain B 0.0351031
NFATC2 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 0.0349433
ZMIZ1 zinc finger, MIZ-type containing 1 0.0344782
TF transferrin 0.0340534
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0337743
DTNA dystrobrevin, alpha 0.0337602
IQSEC1 IQ motif and Sec7 domain 1 0.033243
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.0330305
DHRS2 dehydrogenase/reductase (SDR family) member 2 0.033019
APOA2 apolipoprotein A-II 0.0324959
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 0.0313373
MAP2K1 mitogen-activated protein kinase kinase 1 0.0312099
ANKRD11 ankyrin repeat domain 11 0.0307495
ACSL5 acyl-CoA synthetase long-chain family member 5 0.0306205
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0304934
NONO non-POU domain containing, octamer-binding 0.0302558
TMSB10 thymosin beta 10 0.0302277
APLP2 amyloid beta (A4) precursor-like protein 2 0.0299649
PPP6R3 protein phosphatase 6, regulatory subunit 3 0.0296799
EIF4B eukaryotic translation initiation factor 4B 0.0292145
HSPA8 heat shock 70kDa protein 8 0.0290571
MYO1B myosin IB 0.0290359
WDR45B WD repeat domain 45B 0.0283004
RPL35A ribosomal protein L35a 0.0281417
COL7A1 collagen, type VII, alpha 1 0.0280487
RPS17 ribosomal protein S17 0.0276934
FLNB filamin B, beta 0.0275366
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.0273818
RPS12 ribosomal protein S12 0.0273667
RAB6A RAB6A, member RAS oncogene family 0.0272915
SF3B1 splicing factor 3b, subunit 1, 155kDa 0.026952
NFE2L1 nuclear factor, erythroid 2-like 1 0.0267129
TNFAIP3 tumor necrosis factor, alpha-induced protein 3 0.0260809
ACTG1 actin gamma 1 0.026015
RPL37 ribosomal protein L37 0.0260019
HELZ helicase with zinc finger 0.0258674
RSRC2 arginine/serine-rich coiled-coil 2 0.0258432
DIDO1 death inducer-obliterator 1 0.0258426
UBR4 ubiquitin protein ligase E3 component n-recognin 4 0.025632
KCMF1 potassium channel modulatory factor 1 0.0255808
SFTPA2 surfactant protein A2 0.0253726
BRD4 bromodomain containing 4 0.0251235
SMAD3 SMAD family member 3 0.0250993
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0250087
PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 0.0250076
PDE8A phosphodiesterase 8A 0.0249854
YBX1 Y box binding protein 1 0.0249562
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.0246093
ADM adrenomedullin 0.0243935
APOA1 apolipoprotein A-I 0.0243467
NCOR2 nuclear receptor corepressor 2 0.0240105
RPS19 ribosomal protein S19 0.0239122
PDPK1 3-phosphoinositide dependent protein kinase 1 0.0238576
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A 0.023856
TOP1 topoisomerase (DNA) I 0.0237687
MAP3K2 mitogen-activated protein kinase kinase kinase 2 0.0234807
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0234493
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 0.0233099

decreased expression

Symbol Name Standardized Value
APOB apolipoprotein B -0.18705
EHBP1 EH domain binding protein 1 -0.160499
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) -0.146471
FN1 fibronectin 1 -0.142165
SLC38A2 solute carrier family 38, member 2 -0.132567
IGF2 insulin-like growth factor 2 -0.131386
SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 -0.127808
GPC6 glypican 6 -0.114908
GPC3 glypican 3 -0.104719
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.103047
MAML2 mastermind-like 2 (Drosophila) -0.0978309
TM4SF1 transmembrane 4 L six family member 1 -0.0803739
ZBTB20 zinc finger and BTB domain containing 20 -0.0787184
DLC1 DLC1 Rho GTPase activating protein -0.0690707
PTCHD4 patched domain containing 4 -0.0657978
FRMD5 FERM domain containing 5 -0.058614
ROCK2 Rho-associated, coiled-coil containing protein kinase 2 -0.0583557
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0579602
NPAS2 neuronal PAS domain protein 2 -0.0571667
TMEM123 transmembrane protein 123 -0.0569646
EML4 echinoderm microtubule associated protein like 4 -0.0562795
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 -0.055085
ITGAV integrin, alpha V -0.0548986
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 -0.0542232
MBNL3 muscleblind-like splicing regulator 3 -0.0507018
VCL vinculin -0.0498693
DST dystonin -0.0463228
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.0455728
GMDS GDP-mannose 4,6-dehydratase -0.0455515
ACSL4 acyl-CoA synthetase long-chain family member 4 -0.0446661
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0442803
SOX5 SRY (sex determining region Y)-box 5 -0.042286
FARP1 FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) -0.0408858
FBF1 Fas (TNFRSF6) binding factor 1 -0.0404351
FAM135A family with sequence similarity 135, member A -0.0390929
TRIM26 tripartite motif containing 26 -0.0388924
NRIP1 nuclear receptor interacting protein 1 -0.0385442
STAU1 staufen double-stranded RNA binding protein 1 -0.0381887
ITGA1 integrin, alpha 1 -0.0374209
SCN9A sodium channel, voltage gated, type IX alpha subunit -0.036936
UBE2D2 ubiquitin-conjugating enzyme E2D 2 -0.0365366
MAN1A1 mannosidase, alpha, class 1A, member 1 -0.0354805
JMJD1C jumonji domain containing 1C -0.0341338
GPAM glycerol-3-phosphate acyltransferase, mitochondrial -0.0335061
FOXP1 forkhead box P1 -0.0333979
TAS2R14 taste receptor, type 2, member 14 -0.0329966
MALRD1 MAM and LDL receptor class A domain containing 1 -0.0327636
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.032339
OSMR oncostatin M receptor -0.0318007
LRMDA leucine rich melanocyte differentiation associated -0.0316088
ZMYND8 zinc finger, MYND-type containing 8 -0.0311609
C3 complement component 3 -0.0307126
GK glycerol kinase -0.0306276
OSBPL10 oxysterol binding protein-like 10 -0.0305688
RPS6KA3 ribosomal protein S6 kinase, 90kDa, polypeptide 3 -0.0302799
PAWR PRKC, apoptosis, WT1, regulator -0.0300396
GCC2 GRIP and coiled-coil domain containing 2 -0.0298917
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 -0.0296797
SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) -0.0294218
PDLIM5 PDZ and LIM domain 5 -0.0293925
CNKSR3 CNKSR family member 3 -0.0290582
CP ceruloplasmin (ferroxidase) -0.0289567
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0287772
PDGFB platelet-derived growth factor beta polypeptide -0.0285856
GNAS GNAS complex locus -0.0284513
HSPD1 heat shock 60kDa protein 1 (chaperonin) -0.0280171
LYZ lysozyme -0.0279766
ITIH2 inter-alpha-trypsin inhibitor heavy chain 2 -0.0278164
DOCK4 dedicator of cytokinesis 4 -0.0278115
PTPRM protein tyrosine phosphatase, receptor type, M -0.0277773
MAPK8 mitogen-activated protein kinase 8 -0.0277113
DOK6 docking protein 6 -0.0273586
ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila) -0.0272667
UBASH3B ubiquitin associated and SH3 domain containing B -0.027117
HS2ST1 heparan sulfate 2-O-sulfotransferase 1 -0.0270028
PTPRK protein tyrosine phosphatase, receptor type, K -0.0267982
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide -0.0267461
HMGA2 high mobility group AT-hook 2 -0.0266299
CDK6 cyclin-dependent kinase 6 -0.0265363
MAP4 microtubule-associated protein 4 -0.026514
NCOA7 nuclear receptor coactivator 7 -0.0264962
PERP PERP, TP53 apoptosis effector -0.026249
RAPGEF5 Rap guanine nucleotide exchange factor (GEF) 5 -0.0261508
SLC6A14 solute carrier family 6 (amino acid transporter), member 14 -0.0258878
BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) -0.025841
FILIP1L filamin A interacting protein 1-like -0.0256387
VPS54 vacuolar protein sorting 54 homolog (S. cerevisiae) -0.0255699
PATJ PATJ crumbs cell polarity complex component -0.0255657
MBD5 methyl-CpG binding domain protein 5 -0.0255313
ZNF644 zinc finger protein 644 -0.0254556
A2M alpha-2-macroglobulin -0.0252343
LCOR ligand dependent nuclear receptor corepressor -0.0250141
TRMT11 tRNA methyltransferase 11 homolog (S. cerevisiae) -0.0244576
FNDC3A fibronectin type III domain containing 3A -0.0243972
COBLL1 cordon-bleu WH2 repeat protein-like 1 -0.0242893
STK17A serine/threonine kinase 17a -0.0240896
TCF12 transcription factor 12 -0.0232826
ARHGAP18 Rho GTPase activating protein 18 -0.0231099
STAT1 signal transducer and activator of transcription 1, 91kDa -0.0231017
PPP1R9A protein phosphatase 1, regulatory subunit 9A -0.0230521