Fumaric acid_KATO III Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Fumaric acid perturbation in KATO III cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Fumaric acid_KATO III drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
FGFR2 fibroblast growth factor receptor 2 0.162543
CEMIP cell migration inducing protein, hyaluronan binding 0.12973
MYH9 myosin, heavy chain 9, non-muscle 0.126507
KRT8 keratin 8, type II 0.114557
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.105785
PLEC plectin 0.0848018
KRT18 keratin 18, type I 0.0840949
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.0833186
VEGFA vascular endothelial growth factor A 0.0766443
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 0.070352
ITGB4 integrin, beta 4 0.0628302
HYOU1 hypoxia up-regulated 1 0.0606913
SRRM2 serine/arginine repetitive matrix 2 0.0603926
NCOR2 nuclear receptor corepressor 2 0.0601252
TMSB10 thymosin beta 10 0.0597968
FLNB filamin B, beta 0.0589666
TMSB4X thymosin beta 4, X-linked 0.057543
LOC112694756 uncharaterized LOC112694756 0.05673
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0529734
ANLN anillin, actin binding protein 0.0522331
ANXA11 annexin A11 0.0521524
NONO non-POU domain containing, octamer-binding 0.0486016
BCL2L1 BCL2-like 1 0.0470091
MPRIP myosin phosphatase Rho interacting protein 0.0464874
NUMA1 nuclear mitotic apparatus protein 1 0.0456599
B2M beta-2-microglobulin 0.0455655
EZR ezrin 0.045372
HLA-B major histocompatibility complex, class I, B 0.0444981
ARGLU1 arginine and glutamate rich 1 0.0420339
ESYT2 extended synaptotagmin-like protein 2 0.0413842
NDRG1 N-myc downstream regulated 1 0.0411248
HLA-A major histocompatibility complex, class I, A 0.0410413
FAM13A family with sequence similarity 13, member A 0.0404182
ANKRD11 ankyrin repeat domain 11 0.0379541
RAB6A RAB6A, member RAS oncogene family 0.0378416
BHLHE40 basic helix-loop-helix family, member e40 0.0377491
ITGA6 integrin, alpha 6 0.0368144
APLP2 amyloid beta (A4) precursor-like protein 2 0.0364022
SREBF2 sterol regulatory element binding transcription factor 2 0.0363597
NFE2L1 nuclear factor, erythroid 2-like 1 0.0359735
MINK1 misshapen-like kinase 1 0.0341357
DDIT4 DNA-damage-inducible transcript 4 0.0339279
SHB Src homology 2 domain containing adaptor protein B 0.0338929
FAT1 FAT atypical cadherin 1 0.0338726
SET SET nuclear proto-oncogene 0.0338539
CCNY cyclin Y 0.0336762
NIBAN2 niban apoptosis regulator 2 0.0334422
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0329406
ACTN4 actinin, alpha 4 0.0328909
RPL3 ribosomal protein L3 0.0321271
MACF1 microtubule-actin crosslinking factor 1 0.0319612
OGT O-linked N-acetylglucosamine (GlcNAc) transferase 0.0317615
OGA O-GlcNAcase 0.0316082
PCBP2 poly(rC) binding protein 2 0.031473
CD9 CD9 molecule 0.0312292
YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma 0.030968
EEF2 eukaryotic translation elongation factor 2 0.0308477
CEACAM5 carcinoembryonic antigen-related cell adhesion molecule 5 0.0308103
YEATS2 YEATS domain containing 2 0.0293543
AFDN afadin, adherens junction formation factor 0.0292518
C6ORF132 chromosome 6 open reading frame 132 0.0286337
TNIP1 TNFAIP3 interacting protein 1 0.028422
TNRC18 trinucleotide repeat containing 18 0.0280792
BCL9L B-cell CLL/lymphoma 9-like 0.0278193
DNM2 dynamin 2 0.0276169
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa 0.0274861
RNASE12 ribonuclease, RNase A family, 12 (non-active) 0.027462
MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 0.0270998
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0269449
CNBP CCHC-type zinc finger, nucleic acid binding protein 0.0268375
EPHA2 EPH receptor A2 0.0267789
LUC7L3 LUC7-like 3 (S. cerevisiae) 0.026294
EWSR1 EWS RNA-binding protein 1 0.0262048
MAML2 mastermind-like 2 (Drosophila) 0.0258553
FHIP1A FHF complex subunit HOOK interacting protein 1A 0.025651
SPINT2 serine peptidase inhibitor, Kunitz type, 2 0.0253333
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0253278
SUPT6H suppressor of Ty 6 homolog (S. cerevisiae) 0.0251256
RAI1 retinoic acid induced 1 0.025098
PICALM phosphatidylinositol binding clathrin assembly protein 0.0250967
TNFRSF10B tumor necrosis factor receptor superfamily, member 10b 0.0246811
KMT2D lysine (K)-specific methyltransferase 2D 0.0246761
TPM3 tropomyosin 3 0.0243017
EIF4H eukaryotic translation initiation factor 4H 0.0242226
TBCD tubulin folding cofactor D 0.0240159
CALR calreticulin 0.0235989
JUP junction plakoglobin 0.0234248
WWC1 WW and C2 domain containing 1 0.0232637
CPNE1 copine I 0.0231803
ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) 0.0231016
COPG1 coatomer protein complex, subunit gamma 1 0.022968
HSPA8 heat shock 70kDa protein 8 0.0228572
ASAP2 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 0.0228258
CD46 CD46 molecule, complement regulatory protein 0.0227551
DDX6 DEAD (Asp-Glu-Ala-Asp) box helicase 6 0.0226038
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.0225043
PTPRN2 protein tyrosine phosphatase, receptor type, N polypeptide 2 0.0223953
PKM pyruvate kinase, muscle 0.0222181
SPTAN1 spectrin, alpha, non-erythrocytic 1 0.0220729
KRT19 keratin 19, type I 0.0220518

decreased expression

Symbol Name Standardized Value
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.287489
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.172388
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.104892
LMO7 LIM domain 7 -0.102419
AGR2 anterior gradient 2 -0.0953417
TPT1 tumor protein, translationally-controlled 1 -0.077123
PDIA3 protein disulfide isomerase family A, member 3 -0.073202
GMDS GDP-mannose 4,6-dehydratase -0.062354
CEACAM6 carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen) -0.0566106
TMEM123 transmembrane protein 123 -0.0538225
CANX calnexin -0.0485391
CDK13 cyclin-dependent kinase 13 -0.0480017
SLC38A2 solute carrier family 38, member 2 -0.0471796
PARP14 poly (ADP-ribose) polymerase family, member 14 -0.0470629
TMC5 transmembrane channel-like 5 -0.0457309
PTPRK protein tyrosine phosphatase, receptor type, K -0.0454315
GOLGB1 golgin B1 -0.0453514
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 -0.0452955
EHBP1 EH domain binding protein 1 -0.0443784
POF1B premature ovarian failure, 1B -0.0437093
ATF7IP2 activating transcription factor 7 interacting protein 2 -0.0427086
ANXA2 annexin A2 -0.0425634
RAB1A RAB1A, member RAS oncogene family -0.0399597
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0393201
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 -0.038754
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0385403
RPS25 ribosomal protein S25 -0.0375182
FNDC3B fibronectin type III domain containing 3B -0.0368812
TM4SF1 transmembrane 4 L six family member 1 -0.0368067
DNAJC3 DnaJ (Hsp40) homolog, subfamily C, member 3 -0.0338471
SLC38A1 solute carrier family 38, member 1 -0.0330933
SEC31A SEC31 homolog A (S. cerevisiae) -0.0329389
RTN3 reticulon 3 -0.0326644
NCOA7 nuclear receptor coactivator 7 -0.0324201
AHR aryl hydrocarbon receptor -0.0323086
TNFRSF21 tumor necrosis factor receptor superfamily, member 21 -0.0322693
MCU mitochondrial calcium uniporter -0.032161
EIF1 eukaryotic translation initiation factor 1 -0.0304993
FTL ferritin, light polypeptide -0.030489
TMTC2 transmembrane and tetratricopeptide repeat containing 2 -0.0302719
IARS1 isoleucyl-tRNA synthetase 1 -0.0299879
STAU1 staufen double-stranded RNA binding protein 1 -0.0299719
CD2AP CD2-associated protein -0.0299446
CDK6 cyclin-dependent kinase 6 -0.0298943
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0297922
LMAN1 lectin, mannose-binding, 1 -0.0297815
PLSCR1 phospholipid scramblase 1 -0.0297595
FTH1 ferritin, heavy polypeptide 1 -0.0296806
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide -0.0296401
SP100 SP100 nuclear antigen -0.0295777
KLF5 Kruppel-like factor 5 (intestinal) -0.0295558
GULP1 GULP, engulfment adaptor PTB domain containing 1 -0.029219
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 -0.0291006
SLCO1B3-SLCO1B7 SLCO1B3-SLCO1B7 readthrough -0.0290616
ANKHD1 ankyrin repeat and KH domain containing 1 -0.0284909
CATSPERB catsper channel auxiliary subunit beta -0.028358
PATJ PATJ crumbs cell polarity complex component -0.0282417
DSTN destrin (actin depolymerizing factor) -0.0281411
STAT1 signal transducer and activator of transcription 1, 91kDa -0.0279007
GPHN gephyrin -0.0278695
RPL34 ribosomal protein L34 -0.0278634
GCLC glutamate-cysteine ligase, catalytic subunit -0.0278394
PCSK5 proprotein convertase subtilisin/kexin type 5 -0.027541
COPB2 coatomer protein complex, subunit beta 2 (beta prime) -0.0271348
RPS24 ribosomal protein S24 -0.0268889
GOLGA4 golgin A4 -0.0263532
BRAF B-Raf proto-oncogene, serine/threonine kinase -0.0259895
ATM ATM serine/threonine kinase -0.0255517
IER3 immediate early response 3 -0.0252079
EMP1 epithelial membrane protein 1 -0.0250492
XAF1 XIAP associated factor 1 -0.0248385
RPS8 ribosomal protein S8 -0.0247984
SPDYA speedy/RINGO cell cycle regulator family member A -0.0246916
RAB2A RAB2A, member RAS oncogene family -0.0245263
FRMD5 FERM domain containing 5 -0.0245258
PPIB peptidylprolyl isomerase B (cyclophilin B) -0.0242943
INTS6 integrator complex subunit 6 -0.024071
EXT1 exostosin glycosyltransferase 1 -0.023975
GPX2 glutathione peroxidase 2 -0.0239671
BPTF bromodomain PHD finger transcription factor -0.0239056
GFPT1 glutamine--fructose-6-phosphate transaminase 1 -0.023732
RPS6 ribosomal protein S6 -0.0236489
UGGT2 UDP-glucose glycoprotein glucosyltransferase 2 -0.0235049
HM13 histocompatibility (minor) 13 -0.0234526
TRAM1 translocation associated membrane protein 1 -0.0232575
DEK DEK proto-oncogene -0.0231979
SSR1 signal sequence receptor, alpha -0.0231059
HMGA1 high mobility group AT-hook 1 -0.0229582
HSPD1 heat shock 60kDa protein 1 (chaperonin) -0.0229307
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 -0.0228829
RSL1D1 ribosomal L1 domain containing 1 -0.0228095
CADPS2 Ca++-dependent secretion activator 2 -0.0226352
FAF1 Fas (TNFRSF6) associated factor 1 -0.0226334
MUC17 mucin 17, cell surface associated -0.0225547
MTDH metadherin -0.0224929
ALCAM activated leukocyte cell adhesion molecule -0.0224436
HMGB1 high mobility group box 1 -0.0224301
TXNRD1 thioredoxin reductase 1 -0.0222491
SQSTM1 sequestosome 1 -0.0221256
NPSR1 neuropeptide S receptor 1 -0.0220487