Fumaric acid_LOX-IMVI Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Fumaric acid perturbation in LOX-IMVI cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Fumaric acid_LOX-IMVI drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
VIM vimentin 0.172822
EEF2 eukaryotic translation elongation factor 2 0.156615
LOC112694756 uncharaterized LOC112694756 0.121111
EPB41L2 erythrocyte membrane protein band 4.1-like 2 0.101372
PGK1 phosphoglycerate kinase 1 0.100932
MYH9 myosin, heavy chain 9, non-muscle 0.0878305
KDM3A lysine (K)-specific demethylase 3A 0.0841969
TMSB10 thymosin beta 10 0.0792478
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0688364
TRIO trio Rho guanine nucleotide exchange factor 0.0665084
AKAP12 A kinase (PRKA) anchor protein 12 0.0662468
PLEC plectin 0.0635412
YBX3 Y box binding protein 3 0.058877
ANXA2 annexin A2 0.0577542
ELL2 elongation factor, RNA polymerase II, 2 0.0574049
SRRM2 serine/arginine repetitive matrix 2 0.0568598
FLNA filamin A, alpha 0.0565473
RPL3 ribosomal protein L3 0.0528898
UBR5 ubiquitin protein ligase E3 component n-recognin 5 0.051912
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.050713
WDR45B WD repeat domain 45B 0.0505093
HSPA8 heat shock 70kDa protein 8 0.0500841
APP amyloid beta (A4) precursor protein 0.0495835
HOOK2 hook microtubule-tethering protein 2 0.0492409
RAD21 RAD21 homolog (S. pombe) 0.0483071
ERRFI1 ERBB receptor feedback inhibitor 1 0.048122
NONO non-POU domain containing, octamer-binding 0.0472353
DTNA dystrobrevin, alpha 0.0468689
RPL23 ribosomal protein L23 0.0437754
EEF1G eukaryotic translation elongation factor 1 gamma 0.0431837
RPL4 ribosomal protein L4 0.0429385
CXCL8 chemokine (C-X-C motif) ligand 8 0.0426763
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0422109
RUNX1 runt-related transcription factor 1 0.0416601
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.0409072
CORO1C coronin, actin binding protein, 1C 0.0408754
PRRC2A proline-rich coiled-coil 2A 0.0392334
EIF3E eukaryotic translation initiation factor 3, subunit E 0.0386939
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0386104
PTTG1IP pituitary tumor-transforming 1 interacting protein 0.0383667
NUP58 nucleoporin 58 0.0383462
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) 0.0380134
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0367274
ARGLU1 arginine and glutamate rich 1 0.0365409
GNPDA1 glucosamine-6-phosphate deaminase 1 0.0362333
JUN jun proto-oncogene 0.0356873
ADAM9 ADAM metallopeptidase domain 9 0.0353825
EIF4B eukaryotic translation initiation factor 4B 0.0353789
YBX1 Y box binding protein 1 0.0353122
USP3 ubiquitin specific peptidase 3 0.0353058
PPP3CA protein phosphatase 3, catalytic subunit, alpha isozyme 0.0352191
PDPK1 3-phosphoinositide dependent protein kinase 1 0.0351415
LDHA lactate dehydrogenase A 0.0348474
CD109 CD109 molecule 0.0347032
MARCHF6 membrane associated ring-CH-type finger 6 0.0338149
TNIP1 TNFAIP3 interacting protein 1 0.0336379
OGT O-linked N-acetylglucosamine (GlcNAc) transferase 0.0322964
PSMD14 proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 0.0322456
RPL11 ribosomal protein L11 0.03186
BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 0.0316772
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.0310897
MACF1 microtubule-actin crosslinking factor 1 0.0310352
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.0305659
MIDEAS mitotic deacetylase associated SANT domain protein 0.0305547
DDIT4 DNA-damage-inducible transcript 4 0.0296039
EIF1 eukaryotic translation initiation factor 1 0.0295628
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.02925
FGFR1 fibroblast growth factor receptor 1 0.029238
ATP13A3 ATPase type 13A3 0.0286458
WDR43 WD repeat domain 43 0.0281597
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0278738
NACA nascent polypeptide-associated complex alpha subunit 0.0278177
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 0.0277851
FLNC filamin C, gamma 0.0276928
ARID1A AT rich interactive domain 1A (SWI-like) 0.0276826
MMP12 matrix metallopeptidase 12 0.0275402
ANKRD11 ankyrin repeat domain 11 0.0273311
PRRC2B proline-rich coiled-coil 2B 0.0272782
RPS4X ribosomal protein S4, X-linked 0.0270118
RNF145 ring finger protein 145 0.0269974
MAP2K1 mitogen-activated protein kinase kinase 1 0.0269843
RTTN rotatin 0.0269319
TSC22D2 TSC22 domain family, member 2 0.0269237
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 0.0269236
DST dystonin 0.0267613
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 0.0265805
ACTN1 actinin, alpha 1 0.0265738
RPL37 ribosomal protein L37 0.0265613
ATF3 activating transcription factor 3 0.025874
RLF rearranged L-myc fusion 0.0258613
PUM1 pumilio RNA-binding family member 1 0.025837
RAB8B RAB8B, member RAS oncogene family 0.0255541
FRMD6 FERM domain containing 6 0.0254113
RERE arginine-glutamic acid dipeptide (RE) repeats 0.0252211
RPL41 ribosomal protein L41 0.0251487
BTAF1 BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa 0.0249519
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha 0.0248895
BHLHE40 basic helix-loop-helix family, member e40 0.0245131
VGF VGF nerve growth factor inducible 0.0244512
NDRG1 N-myc downstream regulated 1 0.0244465

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.366163
PRKG1 protein kinase, cGMP-dependent, type I -0.10804
FTL ferritin, light polypeptide -0.107659
GPC6 glypican 6 -0.0995464
EFNA5 ephrin-A5 -0.0754567
NALF1 NALCN channel auxiliary factor 1 -0.0683726
SLC8A1 solute carrier family 8 (sodium/calcium exchanger), member 1 -0.0661798
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0611164
ALCAM activated leukocyte cell adhesion molecule -0.0602804
PLEKHA5 pleckstrin homology domain containing, family A member 5 -0.0594028
SDCCAG8 serologically defined colon cancer antigen 8 -0.0567714
RIGI RNA sensor RIG-I -0.0555967
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0547009
ASPH aspartate beta-hydroxylase -0.0494254
RPS2 ribosomal protein S2 -0.0454271
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0444677
TMPRSS15 transmembrane protease, serine 15 -0.0440488
PDE4D phosphodiesterase 4D, cAMP-specific -0.0435027
MBD5 methyl-CpG binding domain protein 5 -0.0421636
USP34 ubiquitin specific peptidase 34 -0.0414998
INTS6 integrator complex subunit 6 -0.0409208
SAMD3 sterile alpha motif domain containing 3 -0.0404069
NABP1 nucleic acid binding protein 1 -0.0402945
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 -0.0400873
HMGA1 high mobility group AT-hook 1 -0.0394217
ZNF804A zinc finger protein 804A -0.0392697
MBNL1 muscleblind-like splicing regulator 1 -0.0392695
VPS13B vacuolar protein sorting 13 homolog B (yeast) -0.0390153
SIPA1L1 signal-induced proliferation-associated 1 like 1 -0.0376158
DPYD dihydropyrimidine dehydrogenase -0.0365307
MSR1 macrophage scavenger receptor 1 -0.0364744
NAV1 neuron navigator 1 -0.0362964
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 -0.0342518
MT2A metallothionein 2A -0.0334376
ZBTB20 zinc finger and BTB domain containing 20 -0.0333483
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.032908
VCL vinculin -0.0328586
POTEF POTE ankyrin domain family, member F -0.0322841
GPHN gephyrin -0.0322533
NF1 neurofibromin 1 -0.0319657
MAP4 microtubule-associated protein 4 -0.0315386
KIAA1549L KIAA1549-like -0.0314937
PTPRD protein tyrosine phosphatase, receptor type, D -0.0312112
JMJD1C jumonji domain containing 1C -0.0309331
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 -0.0309003
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.0305049
RIMS2 regulating synaptic membrane exocytosis 2 -0.0303891
TXNIP thioredoxin interacting protein -0.030153
ASCC3 activating signal cointegrator 1 complex subunit 3 -0.02971
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 -0.0295347
MYCBP2 MYC binding protein 2, E3 ubiquitin protein ligase -0.0294805
CDH13 cadherin 13 -0.0293346
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0288843
PTCHD4 patched domain containing 4 -0.0287787
NTM neurotrimin -0.0284075
BRIP1 BRCA1 interacting protein C-terminal helicase 1 -0.0282757
NLGN1 neuroligin 1 -0.0279932
TAS2R14 taste receptor, type 2, member 14 -0.0270178
EXOC4 exocyst complex component 4 -0.0270054
SP100 SP100 nuclear antigen -0.0269301
PHF14 PHD finger protein 14 -0.0269276
FOXP1 forkhead box P1 -0.0268769
DDAH1 dimethylarginine dimethylaminohydrolase 1 -0.0265976
ATM ATM serine/threonine kinase -0.0258996
CDC42BPA CDC42 binding protein kinase alpha (DMPK-like) -0.0254355
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 -0.0252773
ACTR2 ARP2 actin-related protein 2 homolog (yeast) -0.0248769
LPP LIM domain containing preferred translocation partner in lipoma -0.0248712
HMGA2 high mobility group AT-hook 2 -0.0247716
ANKRD12 ankyrin repeat domain 12 -0.0246413
PHACTR1 phosphatase and actin regulator 1 -0.0246028
SUPT3H suppressor of Ty 3 homolog (S. cerevisiae) -0.0244052
ANTXR2 anthrax toxin receptor 2 -0.0238232
OSBPL8 oxysterol binding protein-like 8 -0.0237611
RFX3 regulatory factor X, 3 (influences HLA class II expression) -0.0232486
RAD51B RAD51 paralog B -0.0232246
SLC38A2 solute carrier family 38, member 2 -0.0232133
ANKHD1 ankyrin repeat and KH domain containing 1 -0.0229989
AP3B1 adaptor-related protein complex 3, beta 1 subunit -0.0229574
CDK6 cyclin-dependent kinase 6 -0.0224859
RPS6 ribosomal protein S6 -0.022306
ERBIN erbb2 interacting protein -0.0222718
MAML2 mastermind-like 2 (Drosophila) -0.0222
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.0220425
NETO1 neuropilin (NRP) and tolloid (TLL)-like 1 -0.022023
ZNF638 zinc finger protein 638 -0.0219756
LIMS1 LIM and senescent cell antigen-like domains 1 -0.0216626
TRPS1 trichorhinophalangeal syndrome I -0.0214051
WASF2 WAS protein family, member 2 -0.0213712
ZCCHC7 zinc finger, CCHC domain containing 7 -0.0213712
ADGRB3 adhesion G protein-coupled receptor B3 -0.0213371
MAP1B microtubule-associated protein 1B -0.0213194
STAU2 staufen double-stranded RNA binding protein 2 -0.0211859
KIAA1217 KIAA1217 -0.0211334
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 -0.0211042
LRCH3 leucine-rich repeats and calponin homology (CH) domain containing 3 -0.0210593
ADAM32 ADAM metallopeptidase domain 32 -0.0204808
NBEA neurobeachin -0.0203814
MMP16 matrix metallopeptidase 16 (membrane-inserted) -0.0203363
EXOC6B exocyst complex component 6B -0.0201177