Fumaric acid_NCI-H23 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Fumaric acid perturbation in NCI-H23 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Fumaric acid_NCI-H23 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0828622
EEF2 eukaryotic translation elongation factor 2 0.075792
KDM3A lysine (K)-specific demethylase 3A 0.0744135
TXNRD1 thioredoxin reductase 1 0.0704056
OGA O-GlcNAcase 0.0696498
KRT18 keratin 18, type I 0.063429
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0586743
ERRFI1 ERBB receptor feedback inhibitor 1 0.0573635
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0515897
YBX3 Y box binding protein 3 0.0509276
PRKDC protein kinase, DNA-activated, catalytic polypeptide 0.049147
PLEC plectin 0.0490223
CAMTA1 calmodulin binding transcription activator 1 0.0488172
HSPA8 heat shock 70kDa protein 8 0.0484964
TRIO trio Rho guanine nucleotide exchange factor 0.0482266
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.0479779
ADAR adenosine deaminase, RNA-specific 0.0476982
NONO non-POU domain containing, octamer-binding 0.0465416
MYH9 myosin, heavy chain 9, non-muscle 0.0452867
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0436483
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0429878
SNRNP200 small nuclear ribonucleoprotein 200kDa (U5) 0.0423051
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa 0.0420657
PGK1 phosphoglycerate kinase 1 0.0417047
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0409123
PPP6R3 protein phosphatase 6, regulatory subunit 3 0.0407934
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.0398622
LOC112694756 uncharaterized LOC112694756 0.0397479
CTTN cortactin 0.0380763
GRAMD1B GRAM domain containing 1B 0.0377921
RPL3 ribosomal protein L3 0.0371168
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0365961
YBX1 Y box binding protein 1 0.0358051
TPM3 tropomyosin 3 0.0356194
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0355134
CSDE1 cold shock domain containing E1, RNA-binding 0.0354933
RBM39 RNA binding motif protein 39 0.0346036
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 0.0345713
NCAPD2 non-SMC condensin I complex, subunit D2 0.033896
EIF4B eukaryotic translation initiation factor 4B 0.0323592
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.032206
PER1 period circadian clock 1 0.0318822
ADAM17 ADAM metallopeptidase domain 17 0.0317497
XPO1 exportin 1 0.0316006
RLIM ring finger protein, LIM domain interacting 0.0315485
UBR4 ubiquitin protein ligase E3 component n-recognin 4 0.0314197
FUS FUS RNA binding protein 0.0313324
IGF1R insulin-like growth factor 1 receptor 0.0312256
CNBP CCHC-type zinc finger, nucleic acid binding protein 0.0305465
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 0.0303795
RTN4 reticulon 4 0.0298277
CEP192 centrosomal protein 192kDa 0.029805
HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 0.0296828
RRM2 ribonucleotide reductase M2 0.0295314
KRT8 keratin 8, type II 0.0294425
RAD21 RAD21 homolog (S. pombe) 0.0293896
PHIP pleckstrin homology domain interacting protein 0.0293358
H1-0 H1.0 linker histone 0.0292543
NUMA1 nuclear mitotic apparatus protein 1 0.0289046
DIDO1 death inducer-obliterator 1 0.0281759
MYL12B myosin, light chain 12B, regulatory 0.0278453
IQGAP3 IQ motif containing GTPase activating protein 3 0.0276828
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 0.0275642
PTPN11 protein tyrosine phosphatase, non-receptor type 11 0.0272827
RPL4 ribosomal protein L4 0.0270945
DDX39B DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 0.026845
USP22 ubiquitin specific peptidase 22 0.0265281
KPNB1 karyopherin (importin) beta 1 0.0264848
CEP250 centrosomal protein 250kDa 0.0263063
MKI67 marker of proliferation Ki-67 0.0262722
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 0.0262664
DENR density-regulated protein 0.026199
HNRNPD heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) 0.0258446
KCMF1 potassium channel modulatory factor 1 0.0254646
SRRM2 serine/arginine repetitive matrix 2 0.025229
APP amyloid beta (A4) precursor protein 0.025159
MARCHF6 membrane associated ring-CH-type finger 6 0.024806
SEPTIN2 septin 2 0.0246397
OGT O-linked N-acetylglucosamine (GlcNAc) transferase 0.0245575
SET SET nuclear proto-oncogene 0.0245005
FKBP4 FK506 binding protein 4, 59kDa 0.0241234
SEMA4B sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 0.0240344
NUFIP2 nuclear fragile X mental retardation protein interacting protein 2 0.0239641
CAP1 CAP, adenylate cyclase-associated protein 1 (yeast) 0.0236021
MORF4L2 mortality factor 4 like 2 0.0233836
MATR3 matrin 3 0.0233608
RBM33 RNA binding motif protein 33 0.0232405
SF3B1 splicing factor 3b, subunit 1, 155kDa 0.0231471
UBC ubiquitin C 0.0229564
SUN1 Sad1 and UNC84 domain containing 1 0.022844
GNAI3 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3 0.0227731
CAPZA1 capping protein (actin filament) muscle Z-line, alpha 1 0.0227516
USP9X ubiquitin specific peptidase 9, X-linked 0.0225796
MARCHF4 membrane associated ring-CH-type finger 4 0.0224563
ARID1A AT rich interactive domain 1A (SWI-like) 0.0224414
BZW1 basic leucine zipper and W2 domains 1 0.0224384
ARPC2 actin related protein 2/3 complex, subunit 2, 34kDa 0.0222999
ANXA5 annexin A5 0.0222433
CAPRIN1 cell cycle associated protein 1 0.0222158
RPL37 ribosomal protein L37 0.0218962

decreased expression

Symbol Name Standardized Value
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 -0.125829
RAD51B RAD51 paralog B -0.0728561
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0685163
ZCCHC7 zinc finger, CCHC domain containing 7 -0.0643635
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.0631437
AFF3 AF4/FMR2 family, member 3 -0.0598089
EGFR epidermal growth factor receptor -0.0539189
ZBTB20 zinc finger and BTB domain containing 20 -0.0523169
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 -0.0521627
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 -0.0503296
EGR1 early growth response 1 -0.0494683
HMGA2 high mobility group AT-hook 2 -0.0474997
AKAP12 A kinase (PRKA) anchor protein 12 -0.0468302
POTEF POTE ankyrin domain family, member F -0.0447957
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0406371
BPTF bromodomain PHD finger transcription factor -0.0377547
PRH1 proline-rich protein HaeIII subfamily 1 -0.0374885
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0370226
ATXN1 ataxin 1 -0.0354871
RIMS2 regulating synaptic membrane exocytosis 2 -0.0348578
SHANK2 SH3 and multiple ankyrin repeat domains 2 -0.0345177
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0342525
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.0332716
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0329693
USP34 ubiquitin specific peptidase 34 -0.0328892
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0328299
AEBP2 AE binding protein 2 -0.0325521
NF1 neurofibromin 1 -0.0322541
PDE10A phosphodiesterase 10A -0.0312084
INTS6 integrator complex subunit 6 -0.0312033
NABP1 nucleic acid binding protein 1 -0.030528
MAP4 microtubule-associated protein 4 -0.0285904
ATRX alpha thalassemia/mental retardation syndrome X-linked -0.0279609
RABGAP1L RAB GTPase activating protein 1-like -0.027817
WNT2B wingless-type MMTV integration site family, member 2B -0.0276216
SUPT3H suppressor of Ty 3 homolog (S. cerevisiae) -0.02759
THSD4 thrombospondin, type I, domain containing 4 -0.0273265
MCL1 myeloid cell leukemia 1 -0.0272838
TBC1D5 TBC1 domain family, member 5 -0.0272696
DNAH14 dynein, axonemal, heavy chain 14 -0.0269551
SHC1 SHC (Src homology 2 domain containing) transforming protein 1 -0.0263012
MBD5 methyl-CpG binding domain protein 5 -0.025909
N4BP2L2 NEDD4 binding protein 2-like 2 -0.0257467
AKAP9 A kinase (PRKA) anchor protein 9 -0.0254579
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0252476
WDR70 WD repeat domain 70 -0.0249435
NBEAL1 neurobeachin-like 1 -0.024775
ZNF638 zinc finger protein 638 -0.0246437
GOLGB1 golgin B1 -0.0245963
EXOC4 exocyst complex component 4 -0.0245742
DOCK5 dedicator of cytokinesis 5 -0.0243467
PATJ PATJ crumbs cell polarity complex component -0.0242083
CACNA2D1 calcium channel, voltage-dependent, alpha 2/delta subunit 1 -0.0241764
TAS2R14 taste receptor, type 2, member 14 -0.0240563
MDGA2 MAM domain containing glycosylphosphatidylinositol anchor 2 -0.0235417
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.023334
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 -0.023324
WDPCP WD repeat containing planar cell polarity effector -0.0228866
UGGT2 UDP-glucose glycoprotein glucosyltransferase 2 -0.0223773
ERC1 ELKS/RAB6-interacting/CAST family member 1 -0.0219269
RYR3 ryanodine receptor 3 -0.0218021
LRPPRC leucine-rich pentatricopeptide repeat containing -0.0217444
FTL ferritin, light polypeptide -0.0215577
CCNL1 cyclin L1 -0.0215373
MSRB3 methionine sulfoxide reductase B3 -0.0206381
CLIP1 CAP-GLY domain containing linker protein 1 -0.0205109
PDE4D phosphodiesterase 4D, cAMP-specific -0.0204838
PTK2 protein tyrosine kinase 2 -0.020433
DIAPH2 diaphanous-related formin 2 -0.0203897
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0201538
SLC38A2 solute carrier family 38, member 2 -0.0197613
PHF14 PHD finger protein 14 -0.0195461
PDLIM5 PDZ and LIM domain 5 -0.0195381
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0194146
CUX1 cut-like homeobox 1 -0.0193375
EHBP1 EH domain binding protein 1 -0.019156
HMGA1 high mobility group AT-hook 1 -0.0190606
TAPBP TAP binding protein (tapasin) -0.0188957
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) -0.0188797
GPATCH2L G patch domain containing 2-like -0.0187268
ASCC3 activating signal cointegrator 1 complex subunit 3 -0.0186824
BABAM2 BRISC and BRCA1 A complex member 2 -0.0185305
THADA thyroid adenoma associated -0.0184162
TPM2 tropomyosin 2 (beta) -0.0184059
GPHN gephyrin -0.0183341
BBS9 Bardet-Biedl syndrome 9 -0.018264
HDAC8 histone deacetylase 8 -0.0182236
ZMYM4 zinc finger, MYM-type 4 -0.0182202
SVIL supervillin -0.018131
ARB2A ARB2 cotranscriptional regulator A -0.0180559
ATM ATM serine/threonine kinase -0.0179786
OSMR oncostatin M receptor -0.0178682
VPS13B vacuolar protein sorting 13 homolog B (yeast) -0.0177709
DST dystonin -0.0177665
LRBA LPS-responsive vesicle trafficking, beach and anchor containing -0.0176648
NLGN1 neuroligin 1 -0.0175041
SFPQ splicing factor proline/glutamine-rich -0.0173797
PCF11 PCF11 cleavage and polyadenylation factor subunit -0.0173679
RALGAPA1 Ral GTPase activating protein, alpha subunit 1 (catalytic) -0.0173619
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 -0.0173139