Fumaric acid_NCI-H2347 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Fumaric acid perturbation in NCI-H2347 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Fumaric acid_NCI-H2347 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
MYH9 myosin, heavy chain 9, non-muscle 0.170133
PLEC plectin 0.162004
NDRG1 N-myc downstream regulated 1 0.128622
EEF2 eukaryotic translation elongation factor 2 0.113623
VEGFA vascular endothelial growth factor A 0.0918633
BHLHE40 basic helix-loop-helix family, member e40 0.0818756
LAMB3 laminin, beta 3 0.0802519
TMSB4X thymosin beta 4, X-linked 0.0801067
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0795251
TRIO trio Rho guanine nucleotide exchange factor 0.0779787
LAMC2 laminin, gamma 2 0.0768709
LOC112694756 uncharaterized LOC112694756 0.0718085
HSPA8 heat shock 70kDa protein 8 0.0714974
CALR calreticulin 0.0702142
ACTG1 actin gamma 1 0.0685558
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0677479
GRB10 growth factor receptor-bound protein 10 0.0677381
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0641623
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0618679
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 0.0613691
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.0609088
KRT8 keratin 8, type II 0.0574448
EEF1G eukaryotic translation elongation factor 1 gamma 0.0550985
TNIP1 TNFAIP3 interacting protein 1 0.0547499
RPL3 ribosomal protein L3 0.0526257
FLNA filamin A, alpha 0.0520845
KRT7 keratin 7, type II 0.0505607
RPL4 ribosomal protein L4 0.0496873
HLA-B major histocompatibility complex, class I, B 0.0490704
RACK1 receptor for activated C kinase 1 0.0469592
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 0.0457399
SMAD3 SMAD family member 3 0.045254
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0450494
TPM3 tropomyosin 3 0.0447239
MSN moesin 0.0446918
RPL37 ribosomal protein L37 0.044439
PPARD peroxisome proliferator-activated receptor delta 0.0442814
FLNB filamin B, beta 0.0432447
SQSTM1 sequestosome 1 0.0416893
SDC4 syndecan 4 0.0416076
NONO non-POU domain containing, octamer-binding 0.0414736
NFKBIZ nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta 0.0410774
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.0408347
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0407333
PLAU plasminogen activator, urokinase 0.0404057
APLP2 amyloid beta (A4) precursor-like protein 2 0.0397181
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0392781
KRT18 keratin 18, type I 0.0391252
IGFBP3 insulin-like growth factor binding protein 3 0.0386163
MAL2 mal, T-cell differentiation protein 2 (gene/pseudogene) 0.0374596
ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) 0.0371872
RPL23 ribosomal protein L23 0.0364251
HNRNPDL heterogeneous nuclear ribonucleoprotein D-like 0.0361219
AHDC1 AT hook, DNA binding motif, containing 1 0.0353996
MYO5B myosin VB 0.035384
EZR ezrin 0.0350708
PKM pyruvate kinase, muscle 0.0344027
LMNA lamin A/C 0.034385
DDIT4 DNA-damage-inducible transcript 4 0.0326405
TUFT1 tuftelin 1 0.0324009
HLA-A major histocompatibility complex, class I, A 0.0319954
ASPH aspartate beta-hydroxylase 0.0319831
SUPT5H suppressor of Ty 5 homolog (S. cerevisiae) 0.0316531
SET SET nuclear proto-oncogene 0.0316381
EIF4H eukaryotic translation initiation factor 4H 0.0315736
RPS3 ribosomal protein S3 0.0313686
FTH1 ferritin, heavy polypeptide 1 0.031033
APP amyloid beta (A4) precursor protein 0.0308709
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0284397
DUSP10 dual specificity phosphatase 10 0.0282782
PCBP2 poly(rC) binding protein 2 0.0279582
RPL11 ribosomal protein L11 0.0279353
NFKBIA nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha 0.0277582
MPRIP myosin phosphatase Rho interacting protein 0.0277331
ELL2 elongation factor, RNA polymerase II, 2 0.027705
RPS12 ribosomal protein S12 0.0273931
PRRC2C proline-rich coiled-coil 2C 0.0271228
SRRM2 serine/arginine repetitive matrix 2 0.0269765
NUMA1 nuclear mitotic apparatus protein 1 0.0269594
YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma 0.0268415
CNBP CCHC-type zinc finger, nucleic acid binding protein 0.0265069
HDGF hepatoma-derived growth factor 0.0261537
QSOX1 quiescin Q6 sulfhydryl oxidase 1 0.0258389
RPL37A ribosomal protein L37a 0.0256676
BRD2 bromodomain containing 2 0.0255344
TSPAN15 tetraspanin 15 0.0253931
HNRNPD heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) 0.0250825
HNRNPM heterogeneous nuclear ribonucleoprotein M 0.0247617
RPL13A ribosomal protein L13a 0.0246553
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.0245418
SEMA3B sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B 0.0242003
ANXA11 annexin A11 0.0238688
SPTAN1 spectrin, alpha, non-erythrocytic 1 0.0238183
IRF6 interferon regulatory factor 6 0.023817
PTK2 protein tyrosine kinase 2 0.0237406
MICAL3 microtubule associated monooxygenase, calponin and LIM domain containing 3 0.0236449
ITPR3 inositol 1,4,5-trisphosphate receptor, type 3 0.0235661
YBX3 Y box binding protein 3 0.0235392
EIF4G1 eukaryotic translation initiation factor 4 gamma, 1 0.0233431
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0232001

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.312505
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.133853
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.133049
FTL ferritin, light polypeptide -0.0741738
POTEF POTE ankyrin domain family, member F -0.0634363
CD2AP CD2-associated protein -0.0605291
HMGA1 high mobility group AT-hook 1 -0.0582418
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.058125
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0537125
ZFP36L1 ZFP36 ring finger protein-like 1 -0.053142
TMEM263 transmembrane protein 263 -0.0502795
S100A10 S100 calcium binding protein A10 -0.0456353
NPEPPS aminopeptidase puromycin sensitive -0.043282
TM4SF1 transmembrane 4 L six family member 1 -0.0409131
PARP14 poly (ADP-ribose) polymerase family, member 14 -0.0406273
TMEM123 transmembrane protein 123 -0.0397717
IFI16 interferon, gamma-inducible protein 16 -0.0394607
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 -0.0387515
UBC ubiquitin C -0.0378794
ARID4B AT rich interactive domain 4B (RBP1-like) -0.0371026
LIMCH1 LIM and calponin homology domains 1 -0.0363652
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0362914
LY6E lymphocyte antigen 6 complex, locus E -0.0356575
IFI27 interferon, alpha-inducible protein 27 -0.0356539
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0355724
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0355638
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0344005
TPT1 tumor protein, translationally-controlled 1 -0.032998
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0329475
AP3B1 adaptor-related protein complex 3, beta 1 subunit -0.0324458
ERBIN erbb2 interacting protein -0.0324218
STRN3 striatin, calmodulin binding protein 3 -0.0320937
CCNI cyclin I -0.0314543
LMO7 LIM domain 7 -0.0308139
MAP4 microtubule-associated protein 4 -0.0303937
CANX calnexin -0.0302187
MDK midkine (neurite growth-promoting factor 2) -0.0301184
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.0293646
GNAS GNAS complex locus -0.0284611
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 -0.0282255
TOP1 topoisomerase (DNA) I -0.0281387
SEC31A SEC31 homolog A (S. cerevisiae) -0.0280455
MAP4K5 mitogen-activated protein kinase kinase kinase kinase 5 -0.0265321
WSB1 WD repeat and SOCS box containing 1 -0.0261084
KDM5B lysine (K)-specific demethylase 5B -0.0256893
PDIA3 protein disulfide isomerase family A, member 3 -0.0255833
EDIL3 EGF-like repeats and discoidin I-like domains 3 -0.0251612
FUT8 fucosyltransferase 8 (alpha (1,6) fucosyltransferase) -0.0248781
ANKIB1 ankyrin repeat and IBR domain containing 1 -0.0242701
JMJD1C jumonji domain containing 1C -0.0238019
ITCH itchy E3 ubiquitin protein ligase -0.0236356
GARS1 glycyl-tRNA synthetase 1 -0.0232052
IFI6 interferon, alpha-inducible protein 6 -0.0231304
WASF2 WAS protein family, member 2 -0.0231267
RPS23 ribosomal protein S23 -0.023095
CCND1 cyclin D1 -0.0229919
RAB1A RAB1A, member RAS oncogene family -0.022901
SLMAP sarcolemma associated protein -0.0227836
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.0226916
TSC22D2 TSC22 domain family, member 2 -0.0226688
ARHGAP29 Rho GTPase activating protein 29 -0.0225927
KCTD9 potassium channel tetramerization domain containing 9 -0.0218306
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 -0.0217823
MBNL1 muscleblind-like splicing regulator 1 -0.0216032
HSPB1 heat shock 27kDa protein 1 -0.0215168
STAU1 staufen double-stranded RNA binding protein 1 -0.0210237
RICTOR RPTOR independent companion of MTOR, complex 2 -0.0206622
SETD5 SET domain containing 5 -0.0204282
ANKRD28 ankyrin repeat domain 28 -0.0201211
LMAN1 lectin, mannose-binding, 1 -0.0200542
ALCAM activated leukocyte cell adhesion molecule -0.0198718
ZFAND6 zinc finger, AN1-type domain 6 -0.0195534
VDAC1 voltage-dependent anion channel 1 -0.0194677
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 -0.0193572
PTMA prothymosin, alpha -0.019309
UBE2D3 ubiquitin-conjugating enzyme E2D 3 -0.0189632
SLC38A2 solute carrier family 38, member 2 -0.0188978
IFIH1 interferon induced with helicase C domain 1 -0.0187855
PDLIM5 PDZ and LIM domain 5 -0.0187453
SP100 SP100 nuclear antigen -0.0187246
NRP1 neuropilin 1 -0.0186654
RNF145 ring finger protein 145 -0.0186373
MIS18BP1 MIS18 binding protein 1 -0.0185833
IFITM3 interferon induced transmembrane protein 3 -0.0185219
PRRC1 proline-rich coiled-coil 1 -0.0184347
DLG1 discs, large homolog 1 (Drosophila) -0.0184148
NT5C2 5'-nucleotidase, cytosolic II -0.0183902
PARD3 par-3 family cell polarity regulator -0.0183188
VEZT vezatin, adherens junctions transmembrane protein -0.0181477
ZFAND3 zinc finger, AN1-type domain 3 -0.0178531
TM9SF3 transmembrane 9 superfamily member 3 -0.0176765
RPL8 ribosomal protein L8 -0.0176524
IER3 immediate early response 3 -0.0176309
CAPZA1 capping protein (actin filament) muscle Z-line, alpha 1 -0.0174697
ARFGAP3 ADP-ribosylation factor GTPase activating protein 3 -0.0173863
RPL32 ribosomal protein L32 -0.0172469
EPS8 epidermal growth factor receptor pathway substrate 8 -0.0172085
KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 -0.017194
TRAM1 translocation associated membrane protein 1 -0.0171852
BZW1 basic leucine zipper and W2 domains 1 -0.0171682