Fumaric acid_SW 900 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Fumaric acid perturbation in SW 900 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Fumaric acid_SW 900 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
MYH9 myosin, heavy chain 9, non-muscle 0.10221
MT2A metallothionein 2A 0.0691618
VEGFA vascular endothelial growth factor A 0.0676719
LOC112694756 uncharaterized LOC112694756 0.0572327
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.045378
SRRM2 serine/arginine repetitive matrix 2 0.0433102
TMSB4X thymosin beta 4, X-linked 0.0411727
TNIP1 TNFAIP3 interacting protein 1 0.0407297
EEF2 eukaryotic translation elongation factor 2 0.0404259
DDX41 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 0.0389797
SHB Src homology 2 domain containing adaptor protein B 0.0374823
NUMA1 nuclear mitotic apparatus protein 1 0.0359731
SMAD3 SMAD family member 3 0.0339756
PELO pelota homolog (Drosophila) 0.0334384
RPL3 ribosomal protein L3 0.0326357
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0318139
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 0.0312542
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.0294626
PRRC2C proline-rich coiled-coil 2C 0.0286661
NFKBIZ nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta 0.0283083
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0277996
PLEC plectin 0.0273208
ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) 0.0268169
FLNA filamin A, alpha 0.0267422
NONO non-POU domain containing, octamer-binding 0.0263865
SFTPA2 surfactant protein A2 0.0260635
BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 0.025959
SMOX spermine oxidase 0.0249542
APLP2 amyloid beta (A4) precursor-like protein 2 0.0248579
SUPT5H suppressor of Ty 5 homolog (S. cerevisiae) 0.0247638
ARGLU1 arginine and glutamate rich 1 0.0245268
AKAP12 A kinase (PRKA) anchor protein 12 0.0236643
HLA-C major histocompatibility complex, class I, C 0.0235226
NCOR2 nuclear receptor corepressor 2 0.023521
SLC6A6 solute carrier family 6 (neurotransmitter transporter), member 6 0.0234897
TMSB10 thymosin beta 10 0.0226304
MIDEAS mitotic deacetylase associated SANT domain protein 0.0221657
AFDN afadin, adherens junction formation factor 0.0213282
RPL37 ribosomal protein L37 0.0212725
HLA-B major histocompatibility complex, class I, B 0.0211743
CEP250 centrosomal protein 250kDa 0.0211606
EEF1G eukaryotic translation elongation factor 1 gamma 0.0211342
SF3B1 splicing factor 3b, subunit 1, 155kDa 0.0206674
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0203435
HDGF hepatoma-derived growth factor 0.0203159
TRIO trio Rho guanine nucleotide exchange factor 0.0196711
BHLHE40 basic helix-loop-helix family, member e40 0.0195276
FOSL1 FOS-like antigen 1 0.0192493
CPNE1 copine I 0.0192357
PRKAR1A protein kinase, cAMP-dependent, regulatory, type I, alpha 0.0191266
ANGPTL4 angiopoietin-like 4 0.0190645
HSPA8 heat shock 70kDa protein 8 0.0186065
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0184191
SON SON DNA binding protein 0.018166
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0179201
HRNR hornerin 0.0178852
ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 0.0178094
SQSTM1 sequestosome 1 0.0176785
GIGYF2 GRB10 interacting GYF protein 2 0.0176541
ACBD3 acyl-CoA binding domain containing 3 0.0176521
ZMIZ1 zinc finger, MIZ-type containing 1 0.0175954
SYNJ2 synaptojanin 2 0.0175939
SDC4 syndecan 4 0.0175779
FOSL2 FOS-like antigen 2 0.0175622
PRELID2 PRELI domain containing 2 0.0175614
MSN moesin 0.0175512
SEPTIN2 septin 2 0.0173223
HNRNPUL1 heterogeneous nuclear ribonucleoprotein U-like 1 0.0171256
NDRG1 N-myc downstream regulated 1 0.0171186
GOLGA2 golgin A2 0.0169397
RPS27 ribosomal protein S27 0.0169249
ACTN1 actinin, alpha 1 0.0166817
INTS1 integrator complex subunit 1 0.01662
ARAP1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 0.0164755
ACIN1 apoptotic chromatin condensation inducer 1 0.0164069
ACADVL acyl-CoA dehydrogenase, very long chain 0.0163552
NFE2L1 nuclear factor, erythroid 2-like 1 0.016353
CNOT12 CCR4-NOT transcription complex subunit 12 0.0162446
BCL3 B-cell CLL/lymphoma 3 0.0161611
DOCK5 dedicator of cytokinesis 5 0.0160788
YBX3 Y box binding protein 3 0.0159631
HIPK2 homeodomain interacting protein kinase 2 0.0158364
MEF2D myocyte enhancer factor 2D 0.015789
PNN pinin, desmosome associated protein 0.0157422
MPRIP myosin phosphatase Rho interacting protein 0.0157416
IQGAP3 IQ motif containing GTPase activating protein 3 0.0155469
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0155305
TBC1D22A TBC1 domain family, member 22A 0.0151824
GUK1 guanylate kinase 1 0.0151461
PDCD6 programmed cell death 6 0.0151283
NIBAN2 niban apoptosis regulator 2 0.0151062
HLA-A major histocompatibility complex, class I, A 0.0150851
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 0.0150137
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0149133
DBN1 drebrin 1 0.0147705
AHDC1 AT hook, DNA binding motif, containing 1 0.0147431
TGM2 transglutaminase 2 0.014587
KMT2D lysine (K)-specific methyltransferase 2D 0.0145833
SUPT6H suppressor of Ty 6 homolog (S. cerevisiae) 0.0144599
CAB39 calcium binding protein 39 0.0143421

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.582652
CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 -0.162179
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.153255
FN1 fibronectin 1 -0.149244
CXCL8 chemokine (C-X-C motif) ligand 8 -0.135221
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) -0.130258
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0903001
CANX calnexin -0.0788847
NRG1 neuregulin 1 -0.0750911
NAMPT nicotinamide phosphoribosyltransferase -0.0748375
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0664155
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.0573557
ARID4B AT rich interactive domain 4B (RBP1-like) -0.0519427
MKLN1 muskelin 1, intracellular mediator containing kelch motifs -0.0494523
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0489765
TPT1 tumor protein, translationally-controlled 1 -0.0471967
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0467346
IER3 immediate early response 3 -0.0463245
S100A10 S100 calcium binding protein A10 -0.0438793
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0426096
RICTOR RPTOR independent companion of MTOR, complex 2 -0.0412618
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0410076
RAB1A RAB1A, member RAS oncogene family -0.0402321
TXNIP thioredoxin interacting protein -0.0388581
WAC WW domain containing adaptor with coiled-coil -0.038528
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0379714
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.0379375
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 -0.0362649
VIM vimentin -0.0357738
RTN4 reticulon 4 -0.0355845
TFPI2 tissue factor pathway inhibitor 2 -0.0350777
NIPBL Nipped-B homolog (Drosophila) -0.0346912
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0341747
JMJD1C jumonji domain containing 1C -0.0338137
PLEKHA5 pleckstrin homology domain containing, family A member 5 -0.033302
MBNL1 muscleblind-like splicing regulator 1 -0.0324102
LOC102724023 ES1 protein homolog, mitochondrial -0.0319372
ZFP36L1 ZFP36 ring finger protein-like 1 -0.031733
H1-0 H1.0 linker histone -0.0316605
ITGA1 integrin, alpha 1 -0.0316517
ANKRD28 ankyrin repeat domain 28 -0.0312738
KMT2E lysine (K)-specific methyltransferase 2E -0.0307563
EPS8 epidermal growth factor receptor pathway substrate 8 -0.0299966
LCORL ligand dependent nuclear receptor corepressor-like -0.0298073
RAB7A RAB7A, member RAS oncogene family -0.0294746
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase -0.0293327
PDIA3 protein disulfide isomerase family A, member 3 -0.0292703
TMEM263 transmembrane protein 263 -0.0288941
TMEM156 transmembrane protein 156 -0.0287542
QKI QKI, KH domain containing, RNA binding -0.0287108
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0286668
GNAS GNAS complex locus -0.0279867
HMGA1 high mobility group AT-hook 1 -0.0279163
TM4SF1 transmembrane 4 L six family member 1 -0.0277767
SYT1 synaptotagmin I -0.0277655
PSMD14 proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 -0.0276463
HMGA2 high mobility group AT-hook 2 -0.0273713
OSBPL8 oxysterol binding protein-like 8 -0.0268847
NEK7 NIMA-related kinase 7 -0.0267392
UBC ubiquitin C -0.0263208
SOD2 superoxide dismutase 2, mitochondrial -0.0261735
SEPTIN7 septin 7 -0.0261695
MAP4K5 mitogen-activated protein kinase kinase kinase kinase 5 -0.0261291
PARD3 par-3 family cell polarity regulator -0.0259736
MAP1B microtubule-associated protein 1B -0.025799
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 -0.0256789
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0255038
RPS24 ribosomal protein S24 -0.0254858
DSTN destrin (actin depolymerizing factor) -0.0254572
SPAG9 sperm associated antigen 9 -0.0254003
STAU1 staufen double-stranded RNA binding protein 1 -0.0252824
FTL ferritin, light polypeptide -0.0250897
SLC38A2 solute carrier family 38, member 2 -0.0250483
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 -0.0249529
KDM5B lysine (K)-specific demethylase 5B -0.0247912
RPS23 ribosomal protein S23 -0.024617
EXT1 exostosin glycosyltransferase 1 -0.0246159
NCOA7 nuclear receptor coactivator 7 -0.0245874
PTK2 protein tyrosine kinase 2 -0.0245122
VCL vinculin -0.0241555
PDE4D phosphodiesterase 4D, cAMP-specific -0.0240598
PLEKHB2 pleckstrin homology domain containing, family B (evectins) member 2 -0.0240482
PTMA prothymosin, alpha -0.0240138
WASF2 WAS protein family, member 2 -0.0235372
RLF rearranged L-myc fusion -0.0235313
MTDH metadherin -0.0234913
SSBP2 single-stranded DNA binding protein 2 -0.0234018
DNM1L dynamin 1-like -0.0233826
KMT2C lysine (K)-specific methyltransferase 2C -0.0231397
PARP14 poly (ADP-ribose) polymerase family, member 14 -0.0230095
ASPH aspartate beta-hydroxylase -0.0229446
RAB3GAP1 RAB3 GTPase activating protein subunit 1 (catalytic) -0.0229002
MAP3K2 mitogen-activated protein kinase kinase kinase 2 -0.0228479
RPS8 ribosomal protein S8 -0.0228255
RASAL2 RAS protein activator like 2 -0.0225802
ZNF217 zinc finger protein 217 -0.0222182
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.022167
AP3B1 adaptor-related protein complex 3, beta 1 subunit -0.022077
TXNRD1 thioredoxin reductase 1 -0.022057
HILPDA hypoxia inducible lipid droplet-associated -0.0218491