Fumaric acid_hTERT-HPNE Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Fumaric acid perturbation in hTERT-HPNE cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Fumaric acid_hTERT-HPNE drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
MYH9 myosin, heavy chain 9, non-muscle 0.230342
VIM vimentin 0.188647
NDRG1 N-myc downstream regulated 1 0.12532
COL6A3 collagen, type VI, alpha 3 0.121175
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.118362
TRIO trio Rho guanine nucleotide exchange factor 0.106849
STC1 stanniocalcin 1 0.102933
FAM13A family with sequence similarity 13, member A 0.10238
HLA-B major histocompatibility complex, class I, B 0.100405
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0927722
EEF2 eukaryotic translation elongation factor 2 0.0926896
ADM adrenomedullin 0.0839705
SPARC secreted protein, acidic, cysteine-rich (osteonectin) 0.079123
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 0.0762997
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 0.0726679
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0716648
B2M beta-2-microglobulin 0.0710068
VEGFA vascular endothelial growth factor A 0.0688973
TMSB10 thymosin beta 10 0.0673096
NAV2 neuron navigator 2 0.0668244
SOD2 superoxide dismutase 2, mitochondrial 0.0625396
DST dystonin 0.0610576
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 0.0594261
RPL3 ribosomal protein L3 0.0573367
GOLGA4 golgin A4 0.0572171
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0563642
LOC112694756 uncharaterized LOC112694756 0.0556419
MSN moesin 0.0530158
COL6A1 collagen, type VI, alpha 1 0.0528563
TMSB4X thymosin beta 4, X-linked 0.0510769
HLA-A major histocompatibility complex, class I, A 0.0507042
TNS1 tensin 1 0.0483102
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0475564
BHLHE40 basic helix-loop-helix family, member e40 0.0472267
NBAS neuroblastoma amplified sequence 0.0472243
CALU calumenin 0.0467091
ARHGAP21 Rho GTPase activating protein 21 0.045955
NFKBIZ nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta 0.0458165
MMP12 matrix metallopeptidase 12 0.0441237
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.0440269
MYO10 myosin X 0.0439987
PCBP2 poly(rC) binding protein 2 0.0435882
SRRM2 serine/arginine repetitive matrix 2 0.0424356
YBX1 Y box binding protein 1 0.0404256
AMPD3 adenosine monophosphate deaminase 3 0.0403183
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0402162
SIPA1L3 signal-induced proliferation-associated 1 like 3 0.0398161
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 0.0395421
CALR calreticulin 0.0392641
CD59 CD59 molecule, complement regulatory protein 0.0390858
FLNA filamin A, alpha 0.0389809
NAV1 neuron navigator 1 0.0378783
ZNF292 zinc finger protein 292 0.0366633
TNIP1 TNFAIP3 interacting protein 1 0.0364251
JARID2 jumonji, AT rich interactive domain 2 0.0363926
COL6A2 collagen, type VI, alpha 2 0.0363629
SPAG9 sperm associated antigen 9 0.035828
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1 0.0357103
FOSL1 FOS-like antigen 1 0.0354727
ENO1 enolase 1, (alpha) 0.0351633
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0348664
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0343263
SEPTIN9 septin 9 0.0342256
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0338174
MT2A metallothionein 2A 0.032665
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0324275
RBPJ recombination signal binding protein for immunoglobulin kappa J region 0.0322558
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.031725
AXL AXL receptor tyrosine kinase 0.0316833
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0316211
SETD5 SET domain containing 5 0.0310502
INSIG1 insulin induced gene 1 0.0309383
ADAM9 ADAM metallopeptidase domain 9 0.0305058
SF3B1 splicing factor 3b, subunit 1, 155kDa 0.0302208
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 0.0299885
REV3L REV3-like, polymerase (DNA directed), zeta, catalytic subunit 0.0298899
COPA coatomer protein complex, subunit alpha 0.0297653
ACBD3 acyl-CoA binding domain containing 3 0.0296546
YBX3 Y box binding protein 3 0.0295773
ATP13A3 ATPase type 13A3 0.029486
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 0.0293419
HIPK2 homeodomain interacting protein kinase 2 0.0292132
ESYT2 extended synaptotagmin-like protein 2 0.0290997
NUP58 nucleoporin 58 0.0288415
PRRC2C proline-rich coiled-coil 2C 0.0284477
LGALS1 lectin, galactoside-binding, soluble, 1 0.0281468
FMNL2 formin-like 2 0.0281448
EEF1G eukaryotic translation elongation factor 1 gamma 0.0275535
FNIP1 folliculin interacting protein 1 0.0275346
DDIT4 DNA-damage-inducible transcript 4 0.0274285
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.0273588
DIP2C DIP2 disco-interacting protein 2 homolog C (Drosophila) 0.0273075
NUMA1 nuclear mitotic apparatus protein 1 0.02703
MEIS1 Meis homeobox 1 0.0268309
STC2 stanniocalcin 2 0.026752
EIF1 eukaryotic translation initiation factor 1 0.0266171
CDK19 cyclin-dependent kinase 19 0.0265958
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) 0.0263175
PRELID2 PRELI domain containing 2 0.0261867
CAMTA1 calmodulin binding transcription activator 1 0.0261657

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.271898
COL1A1 collagen, type I, alpha 1 -0.143431
FN1 fibronectin 1 -0.115474
INHBA inhibin, beta A -0.110012
EMP1 epithelial membrane protein 1 -0.0881535
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0758079
VCL vinculin -0.066694
PDE3A phosphodiesterase 3A, cGMP-inhibited -0.0615407
CD44 CD44 molecule (Indian blood group) -0.0586455
EXT1 exostosin glycosyltransferase 1 -0.0554502
RAI14 retinoic acid induced 14 -0.0552329
AHNAK AHNAK nucleoprotein -0.0534691
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0491768
ASPH aspartate beta-hydroxylase -0.0476301
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.0457861
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.0443689
LOX lysyl oxidase -0.0424851
EGFR epidermal growth factor receptor -0.0390602
COL5A3 collagen, type V, alpha 3 -0.0371532
COL4A2 collagen, type IV, alpha 2 -0.0370207
ZEB1 zinc finger E-box binding homeobox 1 -0.0365835
ADGRB3 adhesion G protein-coupled receptor B3 -0.0363027
CCND1 cyclin D1 -0.0360819
AKAP12 A kinase (PRKA) anchor protein 12 -0.0357367
FNDC3A fibronectin type III domain containing 3A -0.0355627
NALF1 NALCN channel auxiliary factor 1 -0.0352027
FRMD4A FERM domain containing 4A -0.035068
ARHGAP24 Rho GTPase activating protein 24 -0.0345477
CAVIN1 caveolae associated protein 1 -0.0339042
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0338031
TPT1 tumor protein, translationally-controlled 1 -0.0314589
RFX8 RFX family member 8, lacking RFX DNA binding domain -0.0311678
LIMS1 LIM and senescent cell antigen-like domains 1 -0.0311495
SASH1 SAM and SH3 domain containing 1 -0.0309471
CCDC102B coiled-coil domain containing 102B -0.0304948
OSMR oncostatin M receptor -0.0300791
HMGA2 high mobility group AT-hook 2 -0.0279907
PALM2AKAP2 PALM2 and AKAP2 fusion -0.0272003
TM4SF1 transmembrane 4 L six family member 1 -0.0249602
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 -0.0249264
DIAPH2 diaphanous-related formin 2 -0.0243477
STARD13 StAR-related lipid transfer (START) domain containing 13 -0.0240942
LAMC1 laminin, gamma 1 (formerly LAMB2) -0.0239158
COL3A1 collagen, type III, alpha 1 -0.0236692
ANKRD28 ankyrin repeat domain 28 -0.0235868
MTAP methylthioadenosine phosphorylase -0.0233679
WNT2B wingless-type MMTV integration site family, member 2B -0.0231253
ADAMTS12 ADAM metallopeptidase with thrombospondin type 1 motif, 12 -0.0230043
BPTF bromodomain PHD finger transcription factor -0.0223542
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 -0.0216131
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 -0.0215996
SPRED2 sprouty-related, EVH1 domain containing 2 -0.0215433
IER3 immediate early response 3 -0.0211723
MAP4 microtubule-associated protein 4 -0.0207501
GLG1 golgi glycoprotein 1 -0.0199008
NABP1 nucleic acid binding protein 1 -0.0198215
LMAN1 lectin, mannose-binding, 1 -0.0197674
MBD5 methyl-CpG binding domain protein 5 -0.019517
JAK1 Janus kinase 1 -0.0194145
JMJD1C jumonji domain containing 1C -0.0193998
SLIT2 slit homolog 2 (Drosophila) -0.0189565
ZBTB20 zinc finger and BTB domain containing 20 -0.0188508
NF1 neurofibromin 1 -0.0186229
IGFBP7 insulin-like growth factor binding protein 7 -0.0184552
H1-0 H1.0 linker histone -0.0180982
ZNF804A zinc finger protein 804A -0.0179355
GCC2 GRIP and coiled-coil domain containing 2 -0.0179245
TCF12 transcription factor 12 -0.0177764
PAMR1 peptidase domain containing associated with muscle regeneration 1 -0.0174342
SH3KBP1 SH3-domain kinase binding protein 1 -0.0174275
FTL ferritin, light polypeptide -0.0174101
PLPP3 phospholipid phosphatase 3 -0.0172705
IGF2 insulin-like growth factor 2 -0.0171814
CPA6 carboxypeptidase A6 -0.0171013
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.016856
PAPPA pregnancy-associated plasma protein A, pappalysin 1 -0.016833
EHBP1 EH domain binding protein 1 -0.0167889
PDE4D phosphodiesterase 4D, cAMP-specific -0.0167419
SPRED1 sprouty-related, EVH1 domain containing 1 -0.0165362
STXBP5 syntaxin binding protein 5 (tomosyn) -0.0163617
PARVA parvin, alpha -0.0163503
HS3ST3A1 heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1 -0.0163374
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0160624
ARHGAP26 Rho GTPase activating protein 26 -0.0160181
PDLIM5 PDZ and LIM domain 5 -0.0160021
FBXL17 F-box and leucine-rich repeat protein 17 -0.0159847
ZMYND8 zinc finger, MYND-type containing 8 -0.01569
GRIK5 glutamate receptor, ionotropic, kainate 5 -0.0156704
PTPRK protein tyrosine phosphatase, receptor type, K -0.015664
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats -0.0156606
THBS2 thrombospondin 2 -0.0156417
NOTCH3 notch 3 -0.0155436
LOXL2 lysyl oxidase-like 2 -0.0154476
DLC1 DLC1 Rho GTPase activating protein -0.0151553
GREM1 gremlin 1, DAN family BMP antagonist -0.0149375
NRP1 neuropilin 1 -0.0149062
SLC38A2 solute carrier family 38, member 2 -0.0148468
ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein-like 2 -0.0147856
SPRY4 sprouty homolog 4 (Drosophila) -0.0147087
RPS6KA3 ribosomal protein S6 kinase, 90kDa, polypeptide 3 -0.0146717