Fusidic acid_LoVo Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Fusidic acid perturbation in LoVo cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Fusidic acid_LoVo drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
DSPP dentin sialophosphoprotein 0.171523
EZR ezrin 0.131294
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.123727
RPS12 ribosomal protein S12 0.0947803
LMO7 LIM domain 7 0.0732277
RPS3 ribosomal protein S3 0.0725354
HSPA8 heat shock 70kDa protein 8 0.0704393
RPL41 ribosomal protein L41 0.0687625
ITPRID2 ITPR interacting domain containing 2 0.0652869
PKM pyruvate kinase, muscle 0.0648576
RPL4 ribosomal protein L4 0.0639385
CANX calnexin 0.0625768
ENO1 enolase 1, (alpha) 0.0583448
FAT1 FAT atypical cadherin 1 0.0545464
MYH9 myosin, heavy chain 9, non-muscle 0.0544317
LAMB3 laminin, beta 3 0.0535361
MUC13 mucin 13, cell surface associated 0.0495856
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0489697
LGR5 leucine-rich repeat containing G protein-coupled receptor 5 0.0461249
NAP1L1 nucleosome assembly protein 1-like 1 0.0447415
ASPH aspartate beta-hydroxylase 0.0445078
KCNK1 potassium channel, two pore domain subfamily K, member 1 0.0425154
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 0.0418507
KLF5 Kruppel-like factor 5 (intestinal) 0.0408952
SERINC5 serine incorporator 5 0.0407357
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0391022
AFDN afadin, adherens junction formation factor 0.0384153
SLTM SAFB-like, transcription modulator 0.0360441
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 0.0350491
MACF1 microtubule-actin crosslinking factor 1 0.0346259
LDHA lactate dehydrogenase A 0.0330648
DST dystonin 0.0314917
PGK1 phosphoglycerate kinase 1 0.0308026
AHNAK AHNAK nucleoprotein 0.0306577
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0303447
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0299055
CALR calreticulin 0.0297873
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0296392
RPL26 ribosomal protein L26 0.0281409
SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 0.0277194
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0275515
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.027483
SLK STE20-like kinase 0.0274701
SPON1 spondin 1, extracellular matrix protein 0.0271289
PTPN11 protein tyrosine phosphatase, non-receptor type 11 0.02664
AFF4 AF4/FMR2 family, member 4 0.0264018
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0262008
CEMIP cell migration inducing protein, hyaluronan binding 0.0256365
TMSB4X thymosin beta 4, X-linked 0.0255159
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0248935
RPL14 ribosomal protein L14 0.0247275
FMNL2 formin-like 2 0.0235992
TPR translocated promoter region, nuclear basket protein 0.0235917
SPTAN1 spectrin, alpha, non-erythrocytic 1 0.0234343
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0232977
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 0.023224
CLTC clathrin, heavy chain (Hc) 0.0231943
SRRM2 serine/arginine repetitive matrix 2 0.0230793
BZW1 basic leucine zipper and W2 domains 1 0.0229783
DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1 0.0228619
CD164 CD164 molecule, sialomucin 0.0227423
EIF4B eukaryotic translation initiation factor 4B 0.022564
EHF ets homologous factor 0.0223886
KTN1 kinectin 1 (kinesin receptor) 0.0218466
TPM3 tropomyosin 3 0.0216174
EIF3H eukaryotic translation initiation factor 3, subunit H 0.0215995
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.0215946
MSI2 musashi RNA-binding protein 2 0.0215533
INTS6 integrator complex subunit 6 0.0215471
RIMKLB ribosomal modification protein rimK-like family member B 0.0214557
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0213849
LOC105378220 macrophage receptor MARCO-like 0.0207362
PPP3CA protein phosphatase 3, catalytic subunit, alpha isozyme 0.0207199
RSL1D1 ribosomal L1 domain containing 1 0.0206557
MPRIP myosin phosphatase Rho interacting protein 0.0197684
CAPRIN2 caprin family member 2 0.0197663
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0194221
PDLIM5 PDZ and LIM domain 5 0.019273
NR4A1 nuclear receptor subfamily 4, group A, member 1 0.0191162
TMF1 TATA element modulatory factor 1 0.0187148
F2RL1 coagulation factor II (thrombin) receptor-like 1 0.0186783
ACIN1 apoptotic chromatin condensation inducer 1 0.0186031
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.0185065
EPB41L1 erythrocyte membrane protein band 4.1-like 1 0.018506
DDX3X DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked 0.0184917
MYO6 myosin VI 0.0184019
SFPQ splicing factor proline/glutamine-rich 0.0183866
LGALS12 lectin, galactoside-binding, soluble, 12 0.0183624
RPS2 ribosomal protein S2 0.0182254
NAB1 NGFI-A binding protein 1 (EGR1 binding protein 1) 0.0180119
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 0.0179833
TTC3 tetratricopeptide repeat domain 3 0.0178225
MYO5B myosin VB 0.0177567
HSPH1 heat shock 105kDa/110kDa protein 1 0.0176905
CD9 CD9 molecule 0.0176427
EXT1 exostosin glycosyltransferase 1 0.0174081
ATP10B ATPase, class V, type 10B 0.0173515
APP amyloid beta (A4) precursor protein 0.0173289
GIGYF2 GRB10 interacting GYF protein 2 0.0173161
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0172095

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.291786
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.160845
RPS6 ribosomal protein S6 -0.146861
EPS8 epidermal growth factor receptor pathway substrate 8 -0.122891
RPS23 ribosomal protein S23 -0.112635
RPLP1 ribosomal protein, large, P1 -0.110446
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase -0.0993468
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0964328
ATP5F1B ATP synthase F1 subunit beta -0.0886076
TMSB10 thymosin beta 10 -0.0879845
RPLP0 ribosomal protein, large, P0 -0.0867243
TPT1 tumor protein, translationally-controlled 1 -0.083504
POTEF POTE ankyrin domain family, member F -0.0827152
RPS25 ribosomal protein S25 -0.0822286
ACTG1 actin gamma 1 -0.0730364
RPS24 ribosomal protein S24 -0.068834
RPS16 ribosomal protein S16 -0.0643518
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0634051
HLA-B major histocompatibility complex, class I, B -0.0633272
IL1RAPL1 interleukin 1 receptor accessory protein-like 1 -0.0581252
RPS15 ribosomal protein S15 -0.0568839
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 -0.0560715
RPL28 ribosomal protein L28 -0.0559096
HMGA1 high mobility group AT-hook 1 -0.0558185
RPL9 ribosomal protein L9 -0.0516365
PDIA3 protein disulfide isomerase family A, member 3 -0.0514381
RPL11 ribosomal protein L11 -0.0514298
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 -0.0512421
RPL21 ribosomal protein L21 -0.0505538
RPL8 ribosomal protein L8 -0.0501977
RAP1B RAP1B, member of RAS oncogene family -0.0493705
CYSTM1 cysteine-rich transmembrane module containing 1 -0.0489767
RPS6KA5 ribosomal protein S6 kinase, 90kDa, polypeptide 5 -0.0480207
RPS11 ribosomal protein S11 -0.0472441
DSG3 desmoglein 3 -0.0459477
RPLP2 ribosomal protein, large, P2 -0.0458931
RPS14 ribosomal protein S14 -0.0457907
RPL32 ribosomal protein L32 -0.0454394
RPS21 ribosomal protein S21 -0.0453602
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.045263
RPS13 ribosomal protein S13 -0.0436672
RAB7A RAB7A, member RAS oncogene family -0.0424334
ITGB4 integrin, beta 4 -0.0414574
EGR1 early growth response 1 -0.0412119
RPS29 ribosomal protein S29 -0.0411076
RPS5 ribosomal protein S5 -0.0408937
C6ORF132 chromosome 6 open reading frame 132 -0.0408869
SETD5 SET domain containing 5 -0.0401294
S100A10 S100 calcium binding protein A10 -0.0400138
UBE2H ubiquitin-conjugating enzyme E2H -0.0397214
ASNS asparagine synthetase (glutamine-hydrolyzing) -0.0383498
RPL7A ribosomal protein L7a -0.0383392
MON2 MON2 homolog (S. cerevisiae) -0.0381891
PDE4D phosphodiesterase 4D, cAMP-specific -0.0379657
PERP PERP, TP53 apoptosis effector -0.0376268
PTBP3 polypyrimidine tract binding protein 3 -0.0375394
TXNRD1 thioredoxin reductase 1 -0.0372159
CHCHD2 coiled-coil-helix-coiled-coil-helix domain containing 2 -0.0367863
ASTN2 astrotactin 2 -0.0365841
TUBA1B tubulin, alpha 1b -0.0364151
RPL23 ribosomal protein L23 -0.0363332
GDF15 growth differentiation factor 15 -0.03628
KRT8 keratin 8, type II -0.0360036
PTMA prothymosin, alpha -0.0355171
MCU mitochondrial calcium uniporter -0.0350333
RPL27A ribosomal protein L27a -0.0344529
RPL15 ribosomal protein L15 -0.0340705
FLNB filamin B, beta -0.0338296
PCBP2 poly(rC) binding protein 2 -0.0336946
RAB1A RAB1A, member RAS oncogene family -0.0336221
ANXA2 annexin A2 -0.0335009
S100A6 S100 calcium binding protein A6 -0.0333679
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0331105
EIF1 eukaryotic translation initiation factor 1 -0.0329946
TMEM165 transmembrane protein 165 -0.0327845
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 -0.0322387
ETNK1 ethanolamine kinase 1 -0.0319118
ITGA6 integrin, alpha 6 -0.031862
PRSS3 protease, serine, 3 -0.0314873
IFI6 interferon, alpha-inducible protein 6 -0.0313996
UBC ubiquitin C -0.0311553
JMJD1C jumonji domain containing 1C -0.0305195
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa -0.0302619
MUC2 mucin 2, oligomeric mucus/gel-forming -0.0300272
RPL36A ribosomal protein L36a -0.0299017
RAB11FIP1 RAB11 family interacting protein 1 (class I) -0.029844
EREG epiregulin -0.029562
RPS19 ribosomal protein S19 -0.0295271
TNFRSF10B tumor necrosis factor receptor superfamily, member 10b -0.0291581
ZNF609 zinc finger protein 609 -0.0288719
COG5 component of oligomeric golgi complex 5 -0.028869
RBM39 RNA binding motif protein 39 -0.0287976
FAU Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed -0.028497
WARS1 tryptophanyl-tRNA synthetase 1 -0.0279438
RPL13A ribosomal protein L13a -0.0277108
SBF2 SET binding factor 2 -0.0276025
RPS10 ribosomal protein S10 -0.0274366
CALU calumenin -0.0270069
AP3B1 adaptor-related protein complex 3, beta 1 subunit -0.0269163
PTPN13 protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase) -0.0267163