G401 Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description A human cell line derived from a pediatric patient initially classified as Wilm's tumor, reclassified as deriving from a rhabdoid tumor of the kidney (Experimental Factor Ontology, EFO_0002179)
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Genes

58 genes with high or low copy number in G401 relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
PARP4 poly (ADP-ribose) polymerase family, member 4 3.27658
SPACA5 sperm acrosome associated 5 2.59998
SPACA5B sperm acrosome associated 5B 2.59998
COL23A1 collagen, type XXIII, alpha 1 2.4322
C1ORF177 chromosome 1 open reading frame 177 2.08992
MIR4770 microRNA 4770 2.00783
VCX3A variable charge, X-linked 3A 2.00781
HDHD1 haloacid dehalogenase-like hydrolase domain containing 1 1.93743
RANBP17 RAN binding protein 17 1.91879
LINC00202-1 long intergenic non-protein coding RNA 202-1 1.83306
CNTNAP3B contactin associated protein-like 3B 1.7753
CTSLP2 cathepsin L pseudogene 2 1.66059
HSF2BP heat shock transcription factor 2 binding protein 1.51653
LINC00114 long intergenic non-protein coding RNA 114 1.43378
RBM34 RNA binding motif protein 34 1.33558

low copy number

Symbol Name Standardized Value
GUSBP11 glucuronidase, beta pseudogene 11 -3.21049
C22ORF15 chromosome 22 open reading frame 15 -3.21049
ZNF70 zinc finger protein 70 -3.21049
MMP11 matrix metallopeptidase 11 -3.21049
DDTL D-dopachrome tautomerase-like -3.21049
CHCHD10 coiled-coil-helix-coiled-coil-helix domain containing 10 -3.21049
VPREB3 pre-B lymphocyte 3 -3.21049
DDT D-dopachrome tautomerase -3.21049
RGL4 ral guanine nucleotide dissociation stimulator-like 4 -3.21049
SUSD2 sushi domain containing 2 -3.20009
GGT5 gamma-glutamyltransferase 5 -3.19665
CABIN1 calcineurin binding protein 1 -3.18964
TFEB transcription factor EB -2.92507
DERL3 derlin 3 -2.60512
MIF-AS1 MIF antisense RNA 1 -2.60495
SLC2A11 solute carrier family 2 (facilitated glucose transporter), member 11 -2.60474
MIF macrophage migration inhibitory factor (glycosylation-inhibiting factor) -2.60474
USP34 ubiquitin specific peptidase 34 -2.59463
GSTT2B glutathione S-transferase theta 2B (gene/pseudogene) -2.59447
ZNF512 zinc finger protein 512 -2.53977
FAM138A family with sequence similarity 138, member A -2.49972
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 -2.48157
TSPAN13 tetraspanin 13 -2.43966
LINC00152 long intergenic non-protein coding RNA 152 -2.42091
AFF2 AF4/FMR2 family, member 2 -2.3514
RPL23AP7 ribosomal protein L23a pseudogene 7 -2.28371
SCAPER S-phase cyclin A-associated protein in the ER -2.27143
PI4KA phosphatidylinositol 4-kinase, catalytic, alpha -2.25617
SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 -2.16966
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 -2.15923
SLC24A3 solute carrier family 24 (sodium/potassium/calcium exchanger), member 3 -1.9312
SNED1 sushi, nidogen and EGF-like domains 1 -1.86413
CADM2 cell adhesion molecule 2 -1.79543
MBD5 methyl-CpG binding domain protein 5 -1.78666
CRKL v-crk avian sarcoma virus CT10 oncogene homolog-like -1.69808
GALC galactosylceramidase -1.60385
KLRC2 killer cell lectin-like receptor subfamily C, member 2 -1.57995
LOC284395 uncharacterized LOC284395 -1.49428
GSTTP1 glutathione S-transferase theta pseudogene 1 -1.40465
PTPRT protein tyrosine phosphatase, receptor type, T -1.3995
MBL2 mannose-binding lectin (protein C) 2, soluble -1.36162
LINC01194 long intergenic non-protein coding RNA 1194 -1.32373
MIPEPP3 mitochondrial intermediate peptidase pseudogene 3 -1.32349