GCT Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description A Giant Cell Tumor (GCT) cell line derived from a human fibrous histiocytoma lung metastasis (Experimental Factor Ontology, EFO_0002182)
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Genes

472 genes with high or low copy number in GCT relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
SASH1 SAM and SH3 domain containing 1 2.72457
GABBR2 gamma-aminobutyric acid (GABA) B receptor, 2 2.54663
POC1B POC1 centriolar protein B 2.2876
SMAD5-AS1 SMAD5 antisense RNA 1 2.12293
LOC340074 uncharacterized LOC340074 2.12238
IL9 interleukin 9 2.12238
SLC25A48 solute carrier family 25, member 48 2.12238
CATSPER3 cation channel, sperm associated 3 2.1209
PITX1 paired-like homeodomain 1 2.12086
H2AFY H2A histone family, member Y 2.11984
MIR4461 microRNA 4461 2.11877
TXNDC15 thioredoxin domain containing 15 2.11877
C5ORF24 chromosome 5 open reading frame 24 2.11871
PCBD2 pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2 2.11862
CAMLG calcium modulating ligand 2.11814
DDX46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 2.11741
SEC24A SEC24 family member A 2.11561
LOC389332 uncharacterized LOC389332 2.11309
CXCL14 chemokine (C-X-C motif) ligand 14 2.08311
NEUROG1 neurogenin 1 2.08311
TIFAB TRAF-interacting protein with forkhead-associated domain, family member B 2.08216
DCANP1 dendritic cell-associated nuclear protein 2.08216
C5ORF66-AS2 C5orf66 antisense RNA 2 2.07144
KIAA1024L KIAA1024-like 2.04521
P4HA2 prolyl 4-hydroxylase, alpha polypeptide II 2.04001
IL3 interleukin 3 2.03944
CSF2 colony stimulating factor 2 (granulocyte-macrophage) 2.03944
MIR1289-2 microRNA 1289-2 2.03887
ACSL6 acyl-CoA synthetase long-chain family member 6 2.03874
FSTL4 follistatin-like 4 2.0378
VTRNA2-1 vault RNA 2-1 2.02818
TGFBI transforming growth factor, beta-induced, 68kDa 2.0275
LECT2 leukocyte cell-derived chemotaxin 2 2.02736
MIR874 microRNA 874 2.02646
SMAD5 SMAD family member 5 2.01858
MYOT myotilin 2.0168
NPY6R neuropeptide Y receptor Y6 (pseudogene) 2.01666
HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2.01583
KLHL3 kelch-like family member 3 2.01485
SPOCK1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 2.00717
UBE2B ubiquitin-conjugating enzyme E2B 2.00185
JADE2 jade family PHD finger 2 1.99514
MIR4460 microRNA 4460 1.98866
FNIP1 folliculin interacting protein 1 1.9884
ADAMTS19 ADAM metallopeptidase with thrombospondin type 1 motif, 19 1.98804
RAPGEF6 Rap guanine nucleotide exchange factor (GEF) 6 1.98742
CDKL3 cyclin-dependent kinase-like 3 1.98719
LOC553103 uncharacterized LOC553103 1.96279
PDLIM4 PDZ and LIM domain 4 1.96278
MIR3936 microRNA 3936 1.96268
SLC22A4 solute carrier family 22 (organic cation/zwitterion transporter), member 4 1.96268
HSPA4 heat shock 70kDa protein 4 1.96229
IL4 interleukin 4 1.95829
CCNI2 cyclin I family, member 2 1.95808
IL13 interleukin 13 1.95808
SEPT8 septin 8 1.95808
AFF4 AF4/FMR2 family, member 4 1.95775
KIF3A kinesin family member 3A 1.95766
LEAP2 liver expressed antimicrobial peptide 2 1.95754
SHROOM1 shroom family member 1 1.95754
UQCRQ ubiquinol-cytochrome c reductase, complex III subunit VII, 9.5kDa 1.95754
SOWAHA sosondowah ankyrin repeat domain family member A 1.95754
GDF9 growth differentiation factor 9 1.95754
XTBD1 XRN2 binding domain containing 1 1.95397
MIR3661 microRNA 3661 1.95335
SKP1 S-phase kinase-associated protein 1 1.95279
VDAC1 voltage-dependent anion channel 1 1.95269
C5ORF15 chromosome 5 open reading frame 15 1.95269
HINT1 histidine triad nucleotide binding protein 1 1.95248
LYRM7 LYR motif containing 7 1.95248
PPP2CA protein phosphatase 2, catalytic subunit, alpha isozyme 1.95207
TRPC7 transient receptor potential cation channel, subfamily C, member 7 1.95174
FBXL21 F-box and leucine-rich repeat protein 21 (gene/pseudogene) 1.95139
CDC42SE2 CDC42 small effector 2 1.95055
REEP2 receptor accessory protein 2 1.94528
WNT8A wingless-type MMTV integration site family, member 8A 1.94524
FAM53C family with sequence similarity 53, member C 1.94479
GFRA3 GDNF family receptor alpha 3 1.94479
CDC25C cell division cycle 25C 1.94433
FAM13B family with sequence similarity 13, member B 1.94433
PKD2L2 polycystic kidney disease 2-like 2 1.9433
ZCCHC10 zinc finger, CCHC domain containing 10 1.94169
CHSY3 chondroitin sulfate synthase 3 1.93427
SAR1B secretion associated, Ras related GTPase 1B 1.92508
PPP1R2 protein phosphatase 1, regulatory (inhibitor) subunit 2 1.91429
SLC22A5 solute carrier family 22 (organic cation/carnitine transporter), member 5 1.90992
KCNN2 potassium channel, calcium activated intermediate/small conductance subfamily N alpha, member 2 1.90242
MIR4633 microRNA 4633 1.90158
ISOC1 isochorismatase domain containing 1 1.90082
IL5 interleukin 5 1.89622
RAD50 RAD50 homolog (S. cerevisiae) 1.89208
TCF7 transcription factor 7 (T-cell specific, HMG-box) 1.8881
SNORA74A small nucleolar RNA, H/ACA box 74A 1.88279
SNHG4 small nucleolar RNA host gene 4 1.88279
CDC23 cell division cycle 23 1.88219
KIF20A kinesin family member 20A 1.88219
EGR1 early growth response 1 1.8818
BRD8 bromodomain containing 8 1.88171
ETF1 eukaryotic translation termination factor 1 1.86687
SNORD63 small nucleolar RNA, C/D box 63 1.86676
HSPA9 heat shock 70kDa protein 9 (mortalin) 1.86645
C5ORF56 chromosome 5 open reading frame 56 1.85162
SLC27A6 solute carrier family 27 (fatty acid transporter), member 6 1.84424
IRF1 interferon regulatory factor 1 1.84053
CCDC112 coiled-coil domain containing 112 1.83733
PGGT1B protein geranylgeranyltransferase type I, beta subunit 1.83717
TMED7 transmembrane emp24 protein transport domain containing 7 1.82926
TMED7-TICAM2 TMED7-TICAM2 readthrough 1.82926
TICAM2 toll-like receptor adaptor molecule 2 1.82926
FEM1C fem-1 homolog c (C. elegans) 1.82903
NME5 NME/NM23 family member 5 1.827
LRRTM2 leucine rich repeat transmembrane neuronal 2 1.81289
IK IK cytokine, down-regulator of HLA II 1.80269
WDR55 WD repeat domain 55 1.8025
CD14 CD14 molecule 1.8025
DND1 DND microRNA-mediated repression inhibitor 1 1.8025
NDUFA2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2, 8kDa 1.8025
MIR3655 microRNA 3655 1.8025
TMCO6 transmembrane and coiled-coil domains 6 1.8025
HARS2 histidyl-tRNA synthetase 2, mitochondrial 1.80222
HARS histidyl-tRNA synthetase 1.80222
ZMAT2 zinc finger, matrin-type 2 1.80222
VTRNA1-3 vault RNA 1-3 1.80222
VTRNA1-2 vault RNA 1-2 1.80222
VTRNA1-1 vault RNA 1-1 1.80222
UBE2D2 ubiquitin-conjugating enzyme E2D 2 1.79792
PAIP2 poly(A) binding protein interacting protein 2 1.7899
MATR3 matrin 3 1.78989
MGC32805 uncharacterized LOC153163 1.78911
DTWD2 DTW domain containing 2 1.78817
PHAX phosphorylated adaptor for RNA export 1.78806
HSD17B4 hydroxysteroid (17-beta) dehydrogenase 4 1.78761
TEX43 testis expressed 43 1.78745
CXXC5 CXXC finger protein 5 1.78639
FAM170A family with sequence similarity 170, member A 1.78599
PRRC1 proline-rich coiled-coil 1 1.7857
CTXN3 cortexin 3 1.78525
PPIC peptidylprolyl isomerase C (cyclophilin C) 1.78352
PRDM6 PR domain containing 6 1.78335
LOC100505841 zinc finger protein 474-like 1.78307
SNCAIP synuclein, alpha interacting protein 1.78289
ECSCR endothelial cell surface expressed chemotaxis and apoptosis regulator 1.78261
SNX24 sorting nexin 24 1.7826
TMEM173 transmembrane protein 173 1.78248
SIL1 SIL1 nucleotide exchange factor 1.77927
MEGF10 multiple EGF-like-domains 10 1.77893
TNFAIP8 tumor necrosis factor, alpha-induced protein 8 1.77732
ZNF474 zinc finger protein 474 1.77696
SRFBP1 serum response factor binding protein 1 1.77346
PRR16 proline rich 16 1.77288
FTMT ferritin mitochondrial 1.77248
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 1.76444
FBN2 fibrillin 2 1.76258
PCDHB2 protocadherin beta 2 1.76223
PCDHB3 protocadherin beta 3 1.76223
PCDHB1 protocadherin beta 1 1.76194
IGIP IgA-inducing protein 1.75835
APBB3 amyloid beta (A4) precursor protein-binding, family B, member 3 1.75531
SLC35A4 solute carrier family 35, member A4 1.75531
DNAJC18 DnaJ (Hsp40) homolog, subfamily C, member 18 1.75084
PROB1 proline-rich basic protein 1 1.75063
SPATA24 spermatogenesis associated 24 1.75063
MZB1 marginal zone B and B1 cell-specific protein 1.75063
SLC23A1 solute carrier family 23 (ascorbic acid transporter), member 1 1.75063
GRAMD3 GRAM domain containing 3 1.75001
PCDHB13 protocadherin beta 13 1.74656
PCDHB12 protocadherin beta 12 1.74656
PCDHB11 protocadherin beta 11 1.74656
EIF4EBP3 eukaryotic translation initiation factor 4E binding protein 3 1.74612
SRA1 steroid receptor RNA activator 1 1.74603
ALDH7A1 aldehyde dehydrogenase 7 family, member A1 1.74357
MARCH3 membrane-associated ring finger (C3HC4) 3, E3 ubiquitin protein ligase 1.74201
C5ORF63 chromosome 5 open reading frame 63 1.74201
LMNB1 lamin B1 1.74193
PCDHB14 protocadherin beta 14 1.7419
PCDHB15 protocadherin beta 15 1.7419
PCDHB19P protocadherin beta 19 pseudogene 1.7419
PCDHB18P protocadherin beta 18 pseudogene 1.7419
CEP120 centrosomal protein 120kDa 1.74003
SNX2 sorting nexin 2 1.739
DMXL1 Dmx-like 1 1.73873
CSNK1G3 casein kinase 1, gamma 3 1.7382
PCDHB7 protocadherin beta 7 1.73565
PCDHB4 protocadherin beta 4 1.73563
PCDHB5 protocadherin beta 5 1.73537
PCDHB16 protocadherin beta 16 1.73501
PCDHB8 protocadherin beta 8 1.73499
LOX lysyl oxidase 1.73306
VCX3A variable charge, X-linked 3A 1.7283
ARL14EPL ADP-ribosylation factor-like 14 effector protein-like 1.72366
YIPF5 Yip1 domain family, member 5 1.72088
PCDHA12 protocadherin alpha 12 1.71906
PCDHAC1 protocadherin alpha subfamily C, 1 1.71906
PCDHA13 protocadherin alpha 13 1.71906
PCDHAC2 protocadherin alpha subfamily C, 2 1.71897
PURA purine-rich element binding protein A 1.71577
SEMA6A sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 1.71019
ANKHD1-EIF4EBP3 ANKHD1-EIF4EBP3 readthrough 1.70438
ANKHD1 ankyrin repeat and KH domain containing 1 1.70438
ATG12 autophagy related 12 1.70265
CDO1 cysteine dioxygenase type 1 1.70265
SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 1.70137
SLC25A2 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2 1.70106
TAF7 TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa 1.70106
PCDHGB8P protocadherin gamma subfamily B, 8 pseudogene 1.70051
PCDHGC3 protocadherin gamma subfamily C, 3 1.70013
PCDHGC4 protocadherin gamma subfamily C, 4 1.70013
PCDHGC5 protocadherin gamma subfamily C, 5 1.70013
PCDHGA5 protocadherin gamma subfamily A, 5 1.69962
PCDHGA4 protocadherin gamma subfamily A, 4 1.69962
PCDHGB7 protocadherin gamma subfamily B, 7 1.69962
PCDHGA10 protocadherin gamma subfamily A, 10 1.69962
PCDHGB4 protocadherin gamma subfamily B, 4 1.69962
PCDHGB5 protocadherin gamma subfamily B, 5 1.69962
PCDHGB6 protocadherin gamma subfamily B, 6 1.69962
PCDHGB3 protocadherin gamma subfamily B, 3 1.69962
PCDHGB1 protocadherin gamma subfamily B, 1 1.69962
PCDHGB2 protocadherin gamma subfamily B, 2 1.69962
PCDHGA7 protocadherin gamma subfamily A, 7 1.69962
PCDHGA2 protocadherin gamma subfamily A, 2 1.69962
PCDHGA6 protocadherin gamma subfamily A, 6 1.69962
PCDHGA1 protocadherin gamma subfamily A, 1 1.69962
PCDHGA11 protocadherin gamma subfamily A, 11 1.69962
PCDHGA3 protocadherin gamma subfamily A, 3 1.69962
PCDHGA8 protocadherin gamma subfamily A, 8 1.69962
PCDHGA9 protocadherin gamma subfamily A, 9 1.69962
PCDHGA12 protocadherin gamma subfamily A, 12 1.69962
LINC01184 long intergenic non-protein coding RNA 1184 1.69864
SLC4A9 solute carrier family 4, sodium bicarbonate cotransporter, member 9 1.69726
PSD2 pleckstrin and Sec7 domain containing 2 1.69521
PCDHB17P protocadherin beta 17 pseudogene 1.6947
PCDHB6 protocadherin beta 6 1.69458
PCDHB9 protocadherin beta 9 1.69355
PCDHB10 protocadherin beta 10 1.69343
LOC729080 glycine cleavage system protein H (aminomethyl carrier) pseudogene 1.69143
PCDH12 protocadherin 12 1.69136
GNPDA1 glucosamine-6-phosphate deaminase 1 1.68985
RNF14 ring finger protein 14 1.68971
LVRN laeverin 1.68415
SPINK1 serine peptidase inhibitor, Kazal type 1 1.68411
SPINK9 serine peptidase inhibitor, Kazal type 9 1.67944
HMHB1 histocompatibility (minor) HB-1 1.67657
KIAA0141 KIAA0141 1.67143
ZNF608 zinc finger protein 608 1.66687
ARHGAP26-AS1 ARHGAP26 antisense RNA 1 1.66686
LOC100505658 uncharacterized LOC100505658 1.66567
CYSTM1 cysteine-rich transmembrane module containing 1 1.66547
PFDN1 prefoldin subunit 1 1.66547
RELL2 RELT-like 2 1.66474
FCHSD1 FCH and double SH3 domains 1 1.66474
HDAC3 histone deacetylase 3 1.66474
ARAP3 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 1.66474
DIAPH1 diaphanous-related formin 1 1.66457
RBM22 RNA binding motif protein 22 1.66239
SYNPO synaptopodin 1.66239
DCTN4 dynactin 4 (p62) 1.66208
HBEGF heparin-binding EGF-like growth factor 1.65961
NDST1 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 1.65703
CD74 CD74 molecule, major histocompatibility complex, class II invariant chain 1.65687
PCDH1 protocadherin 1 1.65499
SCGB3A2 secretoglobin, family 3A, member 2 1.65493
C5ORF46 chromosome 5 open reading frame 46 1.65493
NRG2 neuregulin 2 1.6526
SPRY4 sprouty homolog 4 (Drosophila) 1.65252
SPINK14 serine peptidase inhibitor, Kazal type 14 (putative) 1.65031
SPINK6 serine peptidase inhibitor, Kazal type 6 1.65031
SPINK7 serine peptidase inhibitor, Kazal type 7 (putative) 1.6503
ARHGAP26 Rho GTPase activating protein 26 1.64984
NDFIP1 Nedd4 family interacting protein 1 1.64804
LINC00992 long intergenic non-protein coding RNA 992 1.64426
MIR5197 microRNA 5197 1.6431
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 1.64162
SPINK13 serine peptidase inhibitor, Kazal type 13 (putative) 1.63886
TCOF1 Treacher Collins-Franceschetti syndrome 1 1.62775
RPS14 ribosomal protein S14 1.62141
JAKMIP2 janus kinase and microtubule interacting protein 2 1.62101
STK32A serine/threonine kinase 32A 1.61997
FBXO38 F-box protein 38 1.61524
KIF4B kinesin family member 4B 1.61261
AP3S1 adaptor-related protein complex 3, sigma 1 subunit 1.6122
DPYSL3 dihydropyrimidinase-like 3 1.6102
SLC36A1 solute carrier family 36 (proton/amino acid symporter), member 1 1.60849
SLC36A2 solute carrier family 36 (proton/amino acid symporter), member 2 1.60826
JAKMIP2-AS1 JAKMIP2 antisense RNA 1 1.60759
FAT2 FAT atypical cadherin 2 1.60628
ZNF300 zinc finger protein 300 1.60354
HAND1 heart and neural crest derivatives expressed 1 1.60315
SAP30L SAP30-like 1.60315
SLC36A3 solute carrier family 36, member 3 1.60186
MIR3141 microRNA 3141 1.60067
PPP1R2P3 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 3 1.6002
SGCD sarcoglycan, delta (35kDa dystrophin-associated glycoprotein) 1.59677
CDX1 caudal type homeobox 1 1.5946
SLC6A7 solute carrier family 6 (neurotransmitter transporter), member 7 1.59446
MYOZ3 myozenin 3 1.59411
ARSI arylsulfatase family, member I 1.59382
CAMK2A calcium/calmodulin-dependent protein kinase II alpha 1.59368
IL17B interleukin 17B 1.58846
GRPEL2 GrpE-like 2, mitochondrial (E. coli) 1.58313
PCYOX1L prenylcysteine oxidase 1 like 1.58287
SPINK5 serine peptidase inhibitor, Kazal type 5 1.58236
HTR4 5-hydroxytryptamine (serotonin) receptor 4, G protein-coupled 1.58126
MRPL22 mitochondrial ribosomal protein L22 1.58076
PPP2R2B-IT1 PPP2R2B intronic transcript 1 1.58026
LARP1 La ribonucleoprotein domain family, member 1 1.57705
CNOT8 CCR4-NOT transcription complex, subunit 8 1.57462
TIMD4 T-cell immunoglobulin and mucin domain containing 4 1.57349
MFAP3 microfibrillar-associated protein 3 1.57291
FAM114A2 family with sequence similarity 114, member A2 1.57291
SAP30L-AS1 SAP30L antisense RNA 1 (head to head) 1.57283
GPX3 glutathione peroxidase 3 1.57264
ZNF300P1 zinc finger protein 300 pseudogene 1 (functional) 1.5725
GM2A GM2 ganglioside activator 1.57229
CCDC69 coiled-coil domain containing 69 1.57229
GEMIN5 gem (nuclear organelle) associated protein 5 1.57208
PCDHA11 protocadherin alpha 11 1.57169
HAVCR1 hepatitis A virus cellular receptor 1 1.5713
HAVCR2 hepatitis A virus cellular receptor 2 1.57122
ANXA6 annexin A6 1.57077
KCTD16 potassium channel tetramerization domain containing 16 1.5664
LSM11 LSM11, U7 small nuclear RNA associated 1.56513
THG1L tRNA-histidine guanylyltransferase 1-like (S. cerevisiae) 1.56489
SOX30 SRY (sex determining region Y)-box 30 1.56474
PDGFRB platelet-derived growth factor receptor, beta polypeptide 1.56399
ADRB2 adrenoceptor beta 2, surface 1.56395
CSF1R colony stimulating factor 1 receptor 1.56374
NMUR2 neuromedin U receptor 2 1.56365
HMGXB3 HMG box domain containing 3 1.56349
TIGD6 tigger transposable element derived 6 1.56345
SLC26A2 solute carrier family 26 (anion exchanger), member 2 1.56345
NIPAL4 NIPA-like domain containing 4 1.56332
SPARC secreted protein, acidic, cysteine-rich (osteonectin) 1.56083
ARHGEF37 Rho guanine nucleotide exchange factor (GEF) 37 1.55473
AFAP1L1 actin filament associated protein 1-like 1 1.55426
LOC100506990 uncharacterized LOC100506990 1.55341
SMIM3 small integral membrane protein 3 1.54898
PPARGC1B peroxisome proliferator-activated receptor gamma, coactivator 1 beta 1.54836
G3BP1 GTPase activating protein (SH3 domain) binding protein 1 1.54757
FAXDC2 fatty acid hydroxylase domain containing 2 1.54534
GLRA1 glycine receptor, alpha 1 1.54387
TNIP1 TNFAIP3 interacting protein 1 1.54304
FAM71B family with sequence similarity 71, member B 1.54232
MED7 mediator complex subunit 7 1.54225
ITK IL2-inducible T-cell kinase 1.54221
CYFIP2 cytoplasmic FMR1 interacting protein 2 1.54213
FNDC9 fibronectin type III domain containing 9 1.54209
SH3TC2 SH3 domain and tetratricopeptide repeats 2 1.54048
MIR143HG MIR143 host gene 1.53637
TRIM36 tripartite motif containing 36 1.53631
MIR145 microRNA 145 1.53618
MIR143 microRNA 143 1.53618
CSNK1A1 casein kinase 1, alpha 1 1.53582
ABLIM3 actin binding LIM protein family, member 3 1.53573
C5ORF52 chromosome 5 open reading frame 52 1.53492
CLINT1 clathrin interactor 1 1.53447
POU4F3 POU class 4 homeobox 3 1.53425
GPR151 G protein-coupled receptor 151 1.53346
ADAM19 ADAM metallopeptidase domain 19 1.5333
ATOX1 antioxidant 1 copper chaperone 1.53297
MIR548F3 microRNA 548f-3 1.5317
GRXCR2 glutaredoxin, cysteine rich 2 1.53016
GALNT10 polypeptide N-acetylgalactosaminyltransferase 10 1.51772
GABRA6 gamma-aminobutyric acid (GABA) A receptor, alpha 6 1.51743
GRIA1 glutamate receptor, ionotropic, AMPA 1 1.51689
GABRB2 gamma-aminobutyric acid (GABA) A receptor, beta 2 1.51677
PRELID2 PRELI domain containing 2 1.51397
PLAC8L1 PLAC8-like 1 1.50908
PPP2R2B protein phosphatase 2, regulatory subunit B, beta 1.50907
TCERG1 transcription elongation regulator 1 1.50726
SH3RF2 SH3 domain containing ring finger 2 1.50434
NUDCD2 NudC domain containing 2 1.50081
CCNG1 cyclin G1 1.50081
ADRA1B adrenoceptor alpha 1B 1.49994
CCNJL cyclin J-like 1.49983
FABP6 fatty acid binding protein 6, ileal 1.49974
TTC1 tetratricopeptide repeat domain 1 1.49969
PWWP2A PWWP domain containing 2A 1.49919
LOC285629 uncharacterized LOC285629 1.49849
PDE6A phosphodiesterase 6A, cGMP-specific, rod, alpha 1.49507
C1QTNF2 C1q and tumor necrosis factor related protein 2 1.49286
LOC285627 uncharacterized LOC285627 1.48756
IL12B interleukin 12B 1.48684
UBLCP1 ubiquitin-like domain containing CTD phosphatase 1 1.48675
LARS leucyl-tRNA synthetase 1.48513
MIR3142 microRNA 3142 1.48328
PTTG1 pituitary tumor-transforming 1 1.48328
ZBED8 zinc finger, BED-type containing 8 1.48328
SLU7 SLU7 splicing factor homolog (S. cerevisiae) 1.48328
MIR146A microRNA 146a 1.48314
RBM27 RNA binding motif protein 27 1.4828
GABRG2 gamma-aminobutyric acid (GABA) A receptor, gamma 2 1.48029
HMMR hyaluronan-mediated motility receptor (RHAMM) 1.47697
MAT2B methionine adenosyltransferase II, beta 1.47644
RNF145 ring finger protein 145 1.46769
IRGM immunity-related GTPase family, M 1.46726
KDM3B lysine (K)-specific demethylase 3B 1.46711
LOC285626 uncharacterized LOC285626 1.46562
COMMD10 COMM domain containing 10 1.4612
ATP10B ATPase, class V, type 10B 1.46063
GABRA1 gamma-aminobutyric acid (GABA) A receptor, alpha 1 1.45218
EBF1 early B-cell factor 1 1.43031
MIR585 microRNA 585 1.38779
LINC01366 long intergenic non-protein coding RNA 1366 1.3875
C5ORF58 chromosome 5 open reading frame 58 1.38738
MIR378E microRNA 378e 1.38726
FOXI1 forkhead box I1 1.38724
MIR3912 microRNA 3912 1.38681
LCP2 lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa) 1.38625
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 1.38614
GABRP gamma-aminobutyric acid (GABA) A receptor, pi 1.38448
SPDL1 spindle apparatus coiled-coil protein 1 1.36871
KCNMB1 potassium channel subfamily M regulatory beta subunit 1 1.36858
EFCAB9 EF-hand calcium binding domain 9 1.36849
TLX3 T-cell leukemia homeobox 3 1.36784
UBTD2 ubiquitin domain containing 2 1.3676
SH3PXD2B SH3 and PX domains 2B 1.36691
FGF18 fibroblast growth factor 18 1.36644
MIR218-2 microRNA 218-2 1.3501
RPL26L1 ribosomal protein L26-like 1 1.34976
LOC100268168 uncharacterized LOC100268168 1.34976
ERGIC1 endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1 1.34948
SNORA74B small nucleolar RNA, H/ACA box 74B 1.34869
ATP6V0E1 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 1.3485
CREBRF CREB3 regulatory factor 1.34845
BNIP1 BCL2/adenovirus E1B 19kDa interacting protein 1 1.34833
STC2 stanniocalcin 2 1.34783
NKX2-5 NK2 homeobox 5 1.34721
RANBP17 RAN binding protein 17 1.34415
LOC285593 uncharacterized LOC285593 1.34296
RARS arginyl-tRNA synthetase 1.3379
FBLL1 fibrillarin-like 1 1.33786
MIR103A1 microRNA 103a-1 1.33783
MIR103B1 microRNA 103b-1 1.33783
PANK3 pantothenate kinase 3 1.33783
WWC1 WW and C2 domain containing 1 1.33764
DUSP1 dual specificity phosphatase 1 1.33169
NEURL1B neuralized E3 ubiquitin protein ligase 1B 1.33067

low copy number

Symbol Name Standardized Value
CNTNAP5 contactin associated protein-like 5 -2.59042
OPA3 optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia) -2.50484
LOC653786 otoancorin pseudogene -2.5001
ZNF132 zinc finger protein 132 -2.41413
SCAP SREBF chaperone -2.39203
DLEU7 deleted in lymphocytic leukemia, 7 -2.26285
KLK2 kallikrein-related peptidase 2 -2.25299
FAM21A family with sequence similarity 21, member A -2.17483
TAF1B TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa -2.15368
FRAS1 Fraser extracellular matrix complex subunit 1 -2.09237
SH3BP4 SH3-domain binding protein 4 -2.0105
HIST2H3D histone cluster 2, H3d -2.00903
FCGR1A Fc fragment of IgG, high affinity Ia, receptor (CD64) -2.0023
WRN Werner syndrome, RecQ helicase-like -1.99865
LRRC37A4P leucine rich repeat containing 37, member A4, pseudogene -1.94831
STEAP1B STEAP family member 1B -1.90805
HIST2H2BC histone cluster 2, H2bc (pseudogene) -1.90111
LINC00907 long intergenic non-protein coding RNA 907 -1.72177
TRG-AS1 T cell receptor gamma locus antisense RNA 1 -1.71332
KAZN kazrin, periplakin interacting protein -1.57759
AMY2A amylase, alpha 2A (pancreatic) -1.52267
BAGE B melanoma antigen -1.48419
GABRB3 gamma-aminobutyric acid (GABA) A receptor, beta 3 -1.43145
OR52N1 olfactory receptor, family 52, subfamily N, member 1 -1.38127
OR52N5 olfactory receptor, family 52, subfamily N, member 5 -1.38021
OXR1 oxidation resistance 1 -1.35034
MIR4273 microRNA 4273 -1.34783
GSTM2 glutathione S-transferase mu 2 (muscle) -1.32909
PRPF3 pre-mRNA processing factor 3 -1.32198
BOLA1 bolA family member 1 -1.32184
HIST2H2AB histone cluster 2, H2ab -1.32184
HIST2H2AC histone cluster 2, H2ac -1.32184
SV2A synaptic vesicle glycoprotein 2A -1.32184
HIST2H2BE histone cluster 2, H2be -1.32184
CIART circadian associated repressor of transcription -1.31984