GI1 Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description A immortal human brain-derived cell line cell that has the characteristics: Human glioma separated from gliosarcoma. (Cell Line Ontology, CLO_0050634)
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Genes

301 genes with high or low copy number in GI1 relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
PIGK phosphatidylinositol glycan anchor biosynthesis, class K 3.2803
AK5 adenylate kinase 5 3.2803
ZZZ3 zinc finger, ZZ-type containing 3 3.2803
PTGFRN prostaglandin F2 receptor inhibitor 3.2803
ST6GALNAC5 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 3.2803
USP33 ubiquitin specific peptidase 33 3.2803
MYSM1 Myb-like, SWIRM and MPN domains 1 2.60401
OMA1 OMA1 zinc metallopeptidase 2.60401
LINC01135 long intergenic non-protein coding RNA 1135 2.60391
TACSTD2 tumor-associated calcium signal transducer 2 2.60377
JUN jun proto-oncogene 2.60377
HSD52 uncharacterized LOC729467 2.60375
C1ORF87 chromosome 1 open reading frame 87 2.60358
HOOK1 hook microtubule-tethering protein 1 2.60349
CYP2J2 cytochrome P450, family 2, subfamily J, polypeptide 2 2.60345
MIR4711 microRNA 4711 2.60332
SNUPN snurportin 1 2.58466
PTPN9 protein tyrosine phosphatase, non-receptor type 9 2.58452
SIN3A SIN3 transcription regulator family member A 2.58438
SEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A 2.51448
ADORA3 adenosine A3 receptor 2.36934
WRN Werner syndrome, RecQ helicase-like 2.24572
CFP complement factor properdin 2.23618
SYN1 synapsin I 2.23618
ELK1 ELK1, member of ETS oncogene family 2.23618
PCDH11Y protocadherin 11 Y-linked 2.05755
CEP112 centrosomal protein 112kDa 2.00589
TGIF2LY TGFB-induced factor homeobox 2-like, Y-linked 2.00485
DPP6 dipeptidyl-peptidase 6 1.95265
PGBD4 piggyBac transposable element derived 4 1.88742
EMC7 ER membrane protein complex subunit 7 1.88742
GREM1 gremlin 1, DAN family BMP antagonist 1.88427
ATP6V0E2 ATPase, H+ transporting V0 subunit e2 1.86866
ATP6V0E2-AS1 ATP6V0E2 antisense RNA 1 1.8686
LCMT2 leucine carboxyl methyltransferase 2 1.8672
TGM7 transglutaminase 7 1.8672
ADAL adenosine deaminase-like 1.8672
TGM5 transglutaminase 5 1.8672
ZSCAN29 zinc finger and SCAN domain containing 29 1.8672
EPB42 erythrocyte membrane protein band 4.2 1.8672
TMEM62 transmembrane protein 62 1.86709
CCNDBP1 cyclin D-type binding-protein 1 1.86709
ZNF862 zinc finger protein 862 1.86688
TUBGCP4 tubulin, gamma complex associated protein 4 1.86654
ATP8B1 ATPase, aminophospholipid transporter, class I, type 8B, member 1 1.85349
KCTD19 potassium channel tetramerization domain containing 19 1.84701
ZDHHC1 zinc finger, DHHC-type containing 1 1.84701
TPPP3 tubulin polymerization-promoting protein family member 3 1.84695
AVEN apoptosis, caspase activation inhibitor 1.84056
CHRM5 cholinergic receptor, muscarinic 5 1.84021
TP53BP1 tumor protein p53 binding protein 1 1.82599
LOC285692 uncharacterized LOC285692 1.82037
FMN1 formin 1 1.80699
LRRC36 leucine rich repeat containing 36 1.79655
ELL3 elongation factor RNA polymerase II-like 3 1.7961
MIR1282 microRNA 1282 1.79361
SERF2-C15ORF63 SERF2-C15orf63 readthrough 1.79361
SERF2 small EDRK-rich factor 2 1.79361
HYPK huntingtin interacting protein K 1.79361
MFAP1 microfibrillar-associated protein 1 1.79361
SERINC4 serine incorporator 4 1.79361
MAP1A microtubule-associated protein 1A 1.78811
CASC4 cancer susceptibility candidate 4 1.78198
SCG5 secretogranin V 1.78046
PDIA3 protein disulfide isomerase family A, member 3 1.77417
PIN4P1 protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 pseudogene 1 1.74908
WDR76 WD repeat domain 76 1.74821
CATSPER2P1 cation channel, sperm associated 2 pseudogene 1 1.73963
GOLGA8EP golgin A8 family, member E, pseudogene 1.69391
FBXO22-AS1 FBXO22 antisense RNA 1 1.67213
NRG4 neuregulin 4 1.67213
ODF3L1 outer dense fiber of sperm tails 3-like 1 1.67171
MIR4313 microRNA 4313 1.67171
DNM1P35 dynamin 1 pseudogene 35 1.67171
TTTY22 testis-specific transcript, Y-linked 22 (non-protein coding) 1.67162
FRMD5 FERM domain containing 5 1.66961
HERC2P7 hect domain and RLD 2 pseudogene 7 1.65039
FBXO22 F-box protein 22 1.63104
C15ORF27 chromosome 15 open reading frame 27 1.62443
ETFA electron-transfer-flavoprotein, alpha polypeptide 1.61784
ADRA1A adrenoceptor alpha 1A 1.61624
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 1.6102
FZD3 frizzled class receptor 3 1.61006
PNMA2 paraneoplastic Ma antigen 2 1.61002
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha 1.60936
DPYSL2 dihydropyrimidinase-like 2 1.60919
KCTD9 potassium channel tetramerization domain containing 9 1.60886
DOCK5 dedicator of cytokinesis 5 1.6083
ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 1.60808
PPIP5K1 diphosphoinositol pentakisphosphate kinase 1 1.60804
PBK PDZ binding kinase 1.60756
MIR4288 microRNA 4288 1.60636
FBXO16 F-box protein 16 1.60579
ATP6V1C1 ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1 1.60224
CDCA2 cell division cycle associated 2 1.60216
FGGY FGGY carbohydrate kinase domain containing 1.60033
GNRH1 gonadotropin-releasing hormone 1 (luteinizing-releasing hormone) 1.59808
CSPG4 chondroitin sulfate proteoglycan 4 1.59347
SNX33 sorting nexin 33 1.59347
INTS9 integrator complex subunit 9 1.5932
EXTL3 exostosin-like glycosyltransferase 3 1.59264
EBF2 early B-cell factor 2 1.59121
MIR4287 microRNA 4287 1.58356
SCARA5 scavenger receptor class A, member 5 1.57987
PNOC prepronociceptin 1.57966
NUGGC nuclear GTPase, germinal center associated 1.5775
ELP3 elongator acetyltransferase complex subunit 3 1.57575
ZNF395 zinc finger protein 395 1.57529
CHRNA2 cholinergic receptor, nicotinic, alpha 2 (neuronal) 1.57513
HMBOX1 homeobox containing 1 1.57482
MIR548A3 microRNA 548a-3 1.56936
AZIN1 antizyme inhibitor 1 1.56936
UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 2 1.5671
IMP3 IMP3, U3 small nucleolar ribonucleoprotein 1.5648
SCARA3 scavenger receptor class A, member 3 1.56037
ARHGAP11A Rho GTPase activating protein 11A 1.55261
DUSP4 dual specificity phosphatase 4 1.5497
MIR3148 microRNA 3148 1.54801
SARAF store-operated calcium entry-associated regulatory factor 1.54794
CCDC25 coiled-coil domain containing 25 1.54532
DCTN6 dynactin 6 1.54103
STMN4 stathmin-like 4 1.5407
TRIM35 tripartite motif containing 35 1.5407
MIR3622A microRNA 3622a 1.53836
MIR3622B microRNA 3622b 1.53836
PURG purine-rich element binding protein G 1.53798
NEDD4 neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 1.5364
TEX15 testis expressed 15 1.532
PTK2B protein tyrosine kinase 2 beta 1.53132
SMIM18 small integral membrane protein 18 1.53043
GTF2E2 general transcription factor IIE, polypeptide 2, beta 34kDa 1.5297
MBOAT4 membrane bound O-acyltransferase domain containing 4 1.52806
LEPROTL1 leptin receptor overlapping transcript-like 1 1.5277
UBXN8 UBX domain protein 8 1.52147
KIF13B kinesin family member 13B 1.52133
GSR glutathione reductase 1.52128
PPP2CB protein phosphatase 2, catalytic subunit, beta isozyme 1.52052
FAM183CP family with sequence similarity 183, member C, pseudogene 1.51904
DEFA3 defensin, alpha 3, neutrophil-specific 1.51548
CLU clusterin 1.50985
AQP9 aquaporin 9 1.49672
PYGO1 pygopus family PHD finger 1 1.4966
DUSP26 dual specificity phosphatase 26 (putative) 1.49463
RBPMS-AS1 RBPMS antisense RNA 1 1.49213
RNF122 ring finger protein 122 1.49203
NTNG1 netrin G1 1.49099
PRTG protogenin 1.48969
TSPAN3 tetraspanin 3 1.48858
DEFT1P2 defensin, theta 1 pseudogene 2 1.47822
DEFT1P defensin, theta 1 pseudogene 1.47822
ADAM10 ADAM metallopeptidase domain 10 1.47003
VAV3 vav 3 guanine nucleotide exchange factor 1.46769
LOC253044 1.46664
LINGO1 leucine rich repeat and Ig domain containing 1 1.46602
LINC00597 long intergenic non-protein coding RNA 597 1.4657
PSTPIP1 proline-serine-threonine phosphatase interacting protein 1 1.46433
FUT10 fucosyltransferase 10 (alpha (1,3) fucosyltransferase) 1.44824
MAK16 MAK16 homolog (S. cerevisiae) 1.44721
RBPMS RNA binding protein with multiple splicing 1.44715
TTI2 TELO2 interacting protein 2 1.44713
LINC00589 long intergenic non-protein coding RNA 589 1.44676
OR4C45 olfactory receptor, family 4, subfamily C, member 45 1.4438
CKMT1B creatine kinase, mitochondrial 1B 1.43264
LIPC lipase, hepatic 1.43159
NRG1-IT3 NRG1 intronic transcript 3 1.42514
DEFA1B defensin, alpha 1B 1.42193
DEFA1 defensin, alpha 1 1.42193
HMG20A high mobility group 20A 1.42157
RBMY1A3P RNA binding motif protein, Y-linked, family 1, member A3 pseudogene 1.4205
RBMY3AP RNA binding motif protein, Y-linked, family 3, member A pseudogene 1.41759
CES1 carboxylesterase 1 1.4149
RALYL RALY RNA binding protein-like 1.39242
STRC stereocilin 1.39181
EPHX2 epoxide hydrolase 2, cytoplasmic 1.39043
GLCE glucuronic acid epimerase 1.38775
PEAK1 pseudopodium-enriched atypical kinase 1 1.37471
DEFB109P1 defensin, beta 109, pseudogene 1 1.37315
SRY sex determining region Y 1.36088
XGY2 Xg pseudogene, Y-linked 2 1.36088
ZFY zinc finger protein, Y-linked 1.3602
RPS4Y1 ribosomal protein S4, Y-linked 1 1.36003
LINC00278 long intergenic non-protein coding RNA 278 1.35894
EEF1DP3 eukaryotic translation elongation factor 1 delta pseudogene 3 1.35735
NEIL1 nei endonuclease VIII-like 1 (E. coli) 1.35261
MIR631 microRNA 631 1.35261
MAN2C1 mannosidase, alpha, class 2C, member 1 1.35261
COMMD4 COMM domain containing 4 1.35231
GOLGA6D golgin A6 family, member D 1.34951
GOLGA6C golgin A6 family, member C 1.34951
PRMT2IP PRMT2 interacting protein 1.34934
ZDHHC14 zinc finger, DHHC-type containing 14 1.34837
INTS10 integrator complex subunit 10 1.34483
LPL lipoprotein lipase 1.34471
ATP6V1B2 ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2 1.34352
LZTS1 leucine zipper, putative tumor suppressor 1 1.33823
LZTS1-AS1 LZTS1 antisense RNA 1 1.33225
PPCDC phosphopantothenoylcysteine decarboxylase 1.332
SCAMP5 secretory carrier membrane protein 5 1.3317

low copy number

Symbol Name Standardized Value
TNIP3 TNFAIP3 interacting protein 3 -3.21049
VAT1L vesicle amine transport 1-like -3.21049
IFT43 intraflagellar transport 43 -3.21049
TGFB3 transforming growth factor, beta 3 -3.21049
ANKRD31 ankyrin repeat domain 31 -2.73825
NTRK1 neurotrophic tyrosine kinase, receptor, type 1 -2.60008
GSTO2 glutathione S-transferase omega 2 -2.59447
SYNJ2 synaptojanin 2 -2.59447
ZNF878 zinc finger protein 878 -2.59447
PLEKHA7 pleckstrin homology domain containing, family A member 7 -2.59447
ESR1 estrogen receptor 1 -2.59447
DEC1 deleted in esophageal cancer 1 -2.59447
C2ORF50 chromosome 2 open reading frame 50 -2.58848
LINC01420 long intergenic non-protein coding RNA 1420 -2.3514
KIR3DL2 killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 2 -2.34629
TMPRSS11E transmembrane protease, serine 11E -2.3352
CYP24A1 cytochrome P450, family 24, subfamily A, polypeptide 1 -2.28031
TMEM108 transmembrane protein 108 -2.27472
ZNF844 zinc finger protein 844 -2.20314
PLA2G4F phospholipase A2, group IVF -2.17518
DPH6-AS1 DPH6 antisense RNA 1 (head to head) -2.12615
ABCA4 ATP-binding cassette, sub-family A (ABC1), member 4 -2.09254
FREM2 FRAS1 related extracellular matrix protein 2 -2.08575
AMPH amphiphysin -2.08212
SORCS3 sortilin-related VPS10 domain containing receptor 3 -2.08181
IGSF9B immunoglobulin superfamily, member 9B -2.0533
NMNAT2 nicotinamide nucleotide adenylyltransferase 2 -2.01609
MIR548W microRNA 548w -1.99169
BBS9 Bardet-Biedl syndrome 9 -1.98297
NTNG2 netrin G2 -1.97081
NCBP2-AS2 NCBP2 antisense RNA 2 (head to head) -1.93558
NCBP2 nuclear cap binding protein subunit 2, 20kDa -1.93536
PIGZ phosphatidylinositol glycan anchor biosynthesis, class Z -1.89008
HYDIN HYDIN, axonemal central pair apparatus protein -1.87336
METRNL meteorin, glial cell differentiation regulator-like -1.82523
LOC286359 uncharacterized LOC286359 -1.80972
LOC727924 uncharacterized LOC727924 -1.77611
ZNF185 zinc finger protein 185 (LIM domain) -1.76105
PDE10A phosphodiesterase 10A -1.72736
ITGA9 integrin, alpha 9 -1.64027
TUBBP5 tubulin, beta pseudogene 5 -1.62552
HCP5 HLA complex P5 (non-protein coding) -1.61256
HCG26 HLA complex group 26 (non-protein coding) -1.61252
SLC25A21 solute carrier family 25 (mitochondrial oxoadipate carrier), member 21 -1.58848
MICA MHC class I polypeptide-related sequence A -1.58053
ACAD8 acyl-CoA dehydrogenase family, member 8 -1.50964
THYN1 thymocyte nuclear protein 1 -1.50964
VPS26B vacuolar protein sorting 26 homolog B (S. pombe) -1.50963
JAM3 junctional adhesion molecule 3 -1.50963
ST3GAL4-AS1 ST3GAL4 antisense RNA 1 (head to head) -1.49321
GLB1L3 galactosidase, beta 1-like 3 -1.48407
NCAPD3 non-SMC condensin II complex, subunit D3 -1.48405
B3GAT1 beta-1,3-glucuronyltransferase 1 -1.47777
PDCD6 programmed cell death 6 -1.47043
AHRR aryl-hydrocarbon receptor repressor -1.47005
DCPS decapping enzyme, scavenger -1.46847
EIF5AL1 eukaryotic translation initiation factor 5A-like 1 -1.45467
LRRC14B leucine rich repeat containing 14B -1.44847
GLB1L2 galactosidase, beta 1-like 2 -1.43779
PLEKHG4B pleckstrin homology domain containing, family G (with RhoGef domain) member 4B -1.42623
LOC100128239 uncharacterized LOC100128239 -1.416
WDR7 WD repeat domain 7 -1.41192
LOC283177 uncharacterized LOC283177 -1.40799
APOBEC3A apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A -1.40396
CMIP c-Maf inducing protein -1.39005
ESAM endothelial cell adhesion molecule -1.38699
VSIG2 V-set and immunoglobulin domain containing 2 -1.38699
NRGN neurogranin (protein kinase C substrate, RC3) -1.38699
FLNC filamin C, gamma -1.3815
SDHA succinate dehydrogenase complex, subunit A, flavoprotein (Fp) -1.37151
CCDC127 coiled-coil domain containing 127 -1.3715
LINC00883 long intergenic non-protein coding RNA 883 -1.36889
MSANTD2 Myb/SANT-like DNA-binding domain containing 2 -1.36814
RYR3 ryanodine receptor 3 -1.35881
PANX3 pannexin 3 -1.35797
TBRG1 transforming growth factor beta regulator 1 -1.35797
SIAE sialic acid acetylesterase -1.35792
OR8B12 olfactory receptor, family 8, subfamily B, member 12 -1.35771
OR8A1 olfactory receptor, family 8, subfamily A, member 1 -1.35746
OAS1 2'-5'-oligoadenylate synthetase 1, 40/46kDa -1.34256
LHX5 LIM homeobox 5 -1.34045
CCDC42B coiled-coil domain containing 42B -1.33817
SLC8B1 solute carrier family 8 (sodium/lithium/calcium exchanger), member B1 -1.33813
RITA1 RBPJ interacting and tubulin associated 1 -1.3381
IQCD IQ motif containing D -1.3381
DDX54 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 -1.3381
TPCN1 two pore segment channel 1 -1.33806
LINC00971 long intergenic non-protein coding RNA 971 -1.33314
SDSL serine dehydratase-like -1.33116
SDS serine dehydratase -1.3311
RASAL1 RAS protein activator like 1 (GAP1 like) -1.33008
KRT19 keratin 19, type I -1.3278
KRT15 keratin 15, type I -1.32778
ADAMTS15 ADAM metallopeptidase with thrombospondin type 1 motif, 15 -1.32602
DTX1 deltex 1, E3 ubiquitin ligase -1.32524
OAS3 2'-5'-oligoadenylate synthetase 3, 100kDa -1.32524
RPH3A rabphilin 3A -1.32521
OAS2 2'-5'-oligoadenylate synthetase 2, 69/71kDa -1.32521
PLBD2 phospholipase B domain containing 2 -1.32518
SV2C synaptic vesicle glycoprotein 2C -1.32446
ZBTB44 zinc finger and BTB domain containing 44 -1.32291
AXDND1 axonemal dynein light chain domain containing 1 -1.32174
ST14 suppression of tumorigenicity 14 (colon carcinoma) -1.32018