GP2D Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

129 genes with high or low copy number in GP2D relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
MIR99AHG mir-99a-let-7c cluster host gene 2.29442
CELP carboxyl ester lipase pseudogene 1.96243
LINC00222 long intergenic non-protein coding RNA 222 1.60854
HTR6 5-hydroxytryptamine (serotonin) receptor 6, G protein-coupled 1.4408
NBL1 neuroblastoma 1, DAN family BMP antagonist 1.44074
TMCO4 transmembrane and coiled-coil domains 4 1.44047
MINOS1 mitochondrial inner membrane organizing system 1 1.42562
MINOS1-NBL1 MINOS1-NBL1 readthrough 1.42561
SIGLEC14 sialic acid binding Ig-like lectin 14 1.39904
CAPZB capping protein (actin filament) muscle Z-line, beta 1.37948

low copy number

Symbol Name Standardized Value
SPATA17 spermatogenesis associated 17 -3.21049
MAN1C1 mannosidase, alpha, class 1C, member 1 -3.00892
SLC15A2 solute carrier family 15 (oligopeptide transporter), member 2 -2.70782
PLCXD2 phosphatidylinositol-specific phospholipase C, X domain containing 2 -2.69293
SLC2A8 solute carrier family 2 (facilitated glucose transporter), member 8 -2.59447
PANX2 pannexin 2 -2.44713
DUSP14 dual specificity phosphatase 14 -2.44126
ANGPT1 angiopoietin 1 -2.38163
FLJ33534 uncharacterized LOC285150 -2.37644
NR1H4 nuclear receptor subfamily 1, group H, member 4 -2.30584
SYNRG synergin, gamma -2.298
LOC100507391 uncharacterized LOC100507391 -2.27546
RRP15 ribosomal RNA processing 15 homolog (S. cerevisiae) -2.12378
TGFB2-AS1 TGFB2 antisense RNA 1 (head to head) -2.12367
LINC00210 long intergenic non-protein coding RNA 210 -2.11071
ST8SIA1 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 -2.01248
MIR4634 microRNA 4634 -1.97896
DRD1 dopamine receptor D1 -1.97858
SFXN1 sideroflexin 1 -1.97843
TRABD TraB domain containing -1.96558
TGFB2 transforming growth factor, beta 2 -1.95467
MSX2 msh homeobox 2 -1.9447
GMDS GDP-mannose 4,6-dehydratase -1.92896
SNORA74B small nucleolar RNA, H/ACA box 74B -1.91646
CPEB4 cytoplasmic polyadenylation element binding protein 4 -1.91642
CREBRF CREB3 regulatory factor -1.91634
NKX2-5 NK2 homeobox 5 -1.91624
PGCP1 progastricsin (pepsinogen C) pseudogene 1 -1.91074
STAP1 signal transducing adaptor family member 1 -1.90455
BOD1 biorientation of chromosomes in cell division 1 -1.89617
ATP6V0E1 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 -1.88312
ADGRV1 adhesion G protein-coupled receptor V1 -1.86699
HMP19 HMP19 protein -1.85414
C5ORF47 chromosome 5 open reading frame 47 -1.85408
BNIP1 BCL2/adenovirus E1B 19kDa interacting protein 1 -1.854
CPLX2 complexin 2 -1.84724
FLJ16171 FLJ16171 protein -1.84698
STC2 stanniocalcin 2 -1.83696
LOC285593 uncharacterized LOC285593 -1.8368
CENPC centromere protein C -1.79181
THOC3 THO complex 3 -1.77823
LAMA2 laminin, alpha 2 -1.66608
MIR4460 microRNA 4460 -1.63528
TSLP thymic stromal lymphopoietin -1.6271
STARD4 StAR-related lipid transfer (START) domain containing 4 -1.62708
EPB41L4A-AS1 EPB41L4A antisense RNA 1 -1.62696
SNORA13 small nucleolar RNA, H/ACA box 13 -1.62696
SLC25A46 solute carrier family 25, member 46 -1.62076
EPB41L4A-AS2 EPB41L4A antisense RNA 2 (head to head) -1.6114
ISOC1 isochorismatase domain containing 1 -1.60203
MIR4633 microRNA 4633 -1.60202
NREP-AS1 NREP antisense RNA 1 -1.59618
FARS2 phenylalanyl-tRNA synthetase 2, mitochondrial -1.59525
KIAA1024L KIAA1024-like -1.59415
SLC27A6 solute carrier family 27 (fatty acid transporter), member 6 -1.57101
NREP neuronal regeneration related protein -1.56552
CAMK4 calcium/calmodulin-dependent protein kinase IV -1.56303
WDR36 WD repeat domain 36 -1.54683
TMED7 transmembrane emp24 protein transport domain containing 7 -1.54168
TMED7-TICAM2 TMED7-TICAM2 readthrough -1.54168
TICAM2 toll-like receptor adaptor molecule 2 -1.54168
HRH2 histamine receptor H2 -1.5415
CDO1 cysteine dioxygenase type 1 -1.54106
ATG12 autophagy related 12 -1.54106
GRAMD3 GRAM domain containing 3 -1.53474
ARL14EPL ADP-ribosylation factor-like 14 effector protein-like -1.53013
LINC00992 long intergenic non-protein coding RNA 992 -1.52578
CCDC112 coiled-coil domain containing 112 -1.51569
TRIM36 tripartite motif containing 36 -1.51565
PGGT1B protein geranylgeranyltransferase type I, beta subunit -1.51564
FEM1C fem-1 homolog c (C. elegans) -1.51469
AP3S1 adaptor-related protein complex 3, sigma 1 subunit -1.51195
FAM170A family with sequence similarity 170, member A -1.51002
ADAMTS19 ADAM metallopeptidase with thrombospondin type 1 motif, 19 -1.50853
SNCAIP synuclein, alpha interacting protein -1.50844
MGC32805 uncharacterized LOC153163 -1.50843
ALDH7A1 aldehyde dehydrogenase 7 family, member A1 -1.50802
PHAX phosphorylated adaptor for RNA export -1.50798
LVRN laeverin -1.50356
LOC100505841 zinc finger protein 474-like -1.49984
SRFBP1 serum response factor binding protein 1 -1.49843
LOX lysyl oxidase -1.49842
TSSK1B testis-specific serine kinase 1B -1.49585
YTHDC2 YTH domain containing 2 -1.49583
PRRC1 proline-rich coiled-coil 1 -1.48803
C5ORF63 chromosome 5 open reading frame 63 -1.48802
SEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A -1.48794
TEX43 testis expressed 43 -1.4878
SEMA6A sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A -1.48448
SLC39A11 solute carrier family 39, member 11 -1.48295
CEP120 centrosomal protein 120kDa -1.48294
ZNF474 zinc finger protein 474 -1.47483
SNX2 sorting nexin 2 -1.47257
DCP2 decapping mRNA 2 -1.46679
FTMT ferritin mitochondrial -1.46499
FBN2 fibrillin 2 -1.46457
CTXN3 cortexin 3 -1.46364
MARCH3 membrane-associated ring finger (C3HC4) 3, E3 ubiquitin protein ligase -1.46361
LINC01184 long intergenic non-protein coding RNA 1184 -1.46353
SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 -1.46287
LMTK1 lemur tail kinase 1 -1.46036
PRDM6 PR domain containing 6 -1.45889
PPIC peptidylprolyl isomerase C (cyclophilin C) -1.45887
ESRRG estrogen-related receptor gamma -1.44937
DTWD2 DTW domain containing 2 -1.44322
EPB41L4A erythrocyte membrane protein band 4.1 like 4A -1.441
KCNN2 potassium channel, calcium activated intermediate/small conductance subfamily N alpha, member 2 -1.44053
HSD17B4 hydroxysteroid (17-beta) dehydrogenase 4 -1.43709
CSNK1G3 casein kinase 1, gamma 3 -1.43616
CHSY3 chondroitin sulfate synthase 3 -1.43304
STARD4-AS1 STARD4 antisense RNA 1 -1.42176
PRR16 proline rich 16 -1.40114
MEGF10 multiple EGF-like-domains 10 -1.39882
SNX24 sorting nexin 24 -1.39488
LMNB1 lamin B1 -1.37943
ZNF608 zinc finger protein 608 -1.3573
USH2A Usher syndrome 2A (autosomal recessive, mild) -1.35266
APC adenomatous polyposis coli -1.34138
DMXL1 Dmx-like 1 -1.32527