GRANTA-519 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description disease: lymphoma, B cell (Cell Line Ontology, CLO_0003561)
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Genes

78 genes with high or low copy number in GRANTA-519 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
MIR5583-2 microRNA 5583-2 2.93899
MIR5583-1 microRNA 5583-1 2.93899
LINC00669 long intergenic non-protein coding RNA 669 2.76305
CBLN2 cerebellin 2 precursor 2.12931
SOCS6 suppressor of cytokine signaling 6 2.12931
CD226 CD226 molecule 2.12703
LOC100505817 uncharacterized LOC100505817 2.12703
LOC100505776 2.12703
RTTN rotatin 2.12703
CCDC102B coiled-coil domain containing 102B 2.12439
DOK6 docking protein 6 2.12439
TMX3 thioredoxin-related transmembrane protein 3 2.12439
HMSD histocompatibility (minor) serpin domain containing 2.12225
MC4R melanocortin 4 receptor 2.12225
SEC11C SEC11 homolog C (S. cerevisiae) 2.12225
SERPINB8 serpin peptidase inhibitor, clade B (ovalbumin), member 8 2.12225
CCBE1 collagen and calcium binding EGF domains 1 2.12225
RAX retina and anterior neural fold homeobox 2.12225
LMAN1 lectin, mannose-binding, 1 2.12225
SERPINB10 serpin peptidase inhibitor, clade B (ovalbumin), member 10 2.12225
CPLX4 complexin 4 2.12225
NETO1 neuropilin (NRP) and tolloid (TLL)-like 1 2.12225
LOC400655 uncharacterized LOC400655 2.12225
PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 2.12225
GRP gastrin-releasing peptide 2.12225
SERPINB2 serpin peptidase inhibitor, clade B (ovalbumin), member 2 2.12225
CDH7 cadherin 7, type 2 2.11167
CDH19 cadherin 19, type 2 2.11167
DSEL dermatan sulfate epimerase-like 2.11167
LOC643542 uncharacterized LOC643542 2.11167
CDH20 cadherin 20, type 2 2.10992
LOC284294 uncharacterized LOC284294 2.10992
SERPINB7 serpin peptidase inhibitor, clade B (ovalbumin), member 7 2.10992
LOC400654 2.10992
LINC00305 long intergenic non-protein coding RNA 305 2.10992
MIR5011 microRNA 5011 2.10177
LOC100996669 2.10038
RNF152 ring finger protein 152 2.10038
PIGN phosphatidylinositol glycan anchor biosynthesis, class N 2.10038
PHLPP1 PH domain and leucine rich repeat protein phosphatase 1 2.10038
ZCCHC2 zinc finger, CCHC domain containing 2 2.10038
KIAA1468 KIAA1468 2.10038
TNFRSF11A tumor necrosis factor receptor superfamily, member 11a, NFKB activator 2.10038
KDSR 3-ketodihydrosphingosine reductase 2.09431
SERPINB11 serpin peptidase inhibitor, clade B (ovalbumin), member 11 (gene/pseudogene) 2.09431
SERPINB13 serpin peptidase inhibitor, clade B (ovalbumin), member 13 2.09431
VPS4B vacuolar protein sorting 4 homolog B (S. cerevisiae) 2.09431
SERPINB4 serpin peptidase inhibitor, clade B (ovalbumin), member 4 2.09431
SERPINB5 serpin peptidase inhibitor, clade B (ovalbumin), member 5 2.09431
SERPINB3 serpin peptidase inhibitor, clade B (ovalbumin), member 3 2.09431
BCL2 B-cell CLL/lymphoma 2 2.09431
SERPINB12 serpin peptidase inhibitor, clade B (ovalbumin), member 12 2.09431

low copy number

Symbol Name Standardized Value
VPREB1 pre-B lymphocyte 1 -2.98179
ZNF280A zinc finger protein 280A -2.87511
ZNF280B zinc finger protein 280B -2.87511
LOC648691 -2.86885
PRAME preferentially expressed antigen in melanoma -2.86885
GGTLC2 gamma-glutamyltransferase light chain 2 -2.8682
POM121L1P POM121 transmembrane nucleoporin-like 1, pseudogene -2.8682
BCR breakpoint cluster region -2.86497
LINC00226 long intergenic non-protein coding RNA 226 -2.84437
MIR650 microRNA 650 -2.83656
IFNA21 interferon, alpha 21 -2.77074
IFNA4 interferon, alpha 4 -2.7694
IFNA17 interferon, alpha 17 -2.76453
IFNA16 interferon, alpha 16 -2.76453
IFNA10 interferon, alpha 10 -2.75972
IFNA7 interferon, alpha 7 -2.75972
IFNA14 interferon, alpha 14 -2.75972
IFNA22P interferon, alpha 22, pseudogene -2.75555
IFNA5 interferon, alpha 5 -2.74973
KLHL9 kelch-like family member 9 -2.74526
IFNA6 interferon, alpha 6 -2.74032
IFNA13 interferon, alpha 13 -2.73798
IFNA2 interferon, alpha 2 -2.73608
IFNA8 interferon, alpha 8 -2.73024
IFNA1 interferon, alpha 1 -2.72828
IFNE interferon, epsilon -2.72466