Gemcitabine_COLO 205 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Gemcitabine perturbation in COLO 205 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Gemcitabine_COLO 205 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
LMO7 LIM domain 7 0.394386
EXT1 exostosin glycosyltransferase 1 0.249228
INTS6 integrator complex subunit 6 0.157756
SMAD3 SMAD family member 3 0.156575
GCLC glutamate-cysteine ligase, catalytic subunit 0.115882
CYP3A5 cytochrome P450, family 3, subfamily A, polypeptide 5 0.0998623
DNAJC15 DnaJ (Hsp40) homolog, subfamily C, member 15 0.0953971
AKAP13 A kinase (PRKA) anchor protein 13 0.0848011
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0812504
MYO1E myosin IE 0.07512
ANXA2 annexin A2 0.0738426
LCN2 lipocalin 2 0.0706927
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0693708
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0671202
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0659031
LPP LIM domain containing preferred translocation partner in lipoma 0.064507
ZSWIM6 zinc finger, SWIM-type containing 6 0.0634311
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0628055
B2M beta-2-microglobulin 0.0621993
EFNB2 ephrin-B2 0.0615166
KYNU kynureninase 0.0564222
ASPH aspartate beta-hydroxylase 0.0557452
ERN1 endoplasmic reticulum to nucleus signaling 1 0.0549736
GULP1 GULP, engulfment adaptor PTB domain containing 1 0.0547315
DST dystonin 0.0530373
PKM pyruvate kinase, muscle 0.0523579
PLSCR2 phospholipid scramblase 2 0.0516424
CXCL8 chemokine (C-X-C motif) ligand 8 0.0498624
LRCH1 leucine-rich repeats and calponin homology (CH) domain containing 1 0.0488798
DNAJC3 DnaJ (Hsp40) homolog, subfamily C, member 3 0.0478436
TJP1 tight junction protein 1 0.0463477
TXNRD1 thioredoxin reductase 1 0.045839
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0452876
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0450737
HKDC1 hexokinase domain containing 1 0.0440986
CATSPERB catsper channel auxiliary subunit beta 0.0416175
APLP2 amyloid beta (A4) precursor-like protein 2 0.0411142
RNF213 ring finger protein 213 0.0405046
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0403934
MAP7 microtubule-associated protein 7 0.0403842
SIK3 SIK family kinase 3 0.0403054
MCU mitochondrial calcium uniporter 0.0399335
DSPP dentin sialophosphoprotein 0.0386483
FNDC3B fibronectin type III domain containing 3B 0.0382551
SHB Src homology 2 domain containing adaptor protein B 0.0380005
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.0376462
RFFL ring finger and FYVE-like domain containing E3 ubiquitin protein ligase 0.0376007
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0368402
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.0367523
IFI6 interferon, alpha-inducible protein 6 0.0364079
MAN1A1 mannosidase, alpha, class 1A, member 1 0.0361995
FAT1 FAT atypical cadherin 1 0.0361425
SIPA1L2 signal-induced proliferation-associated 1 like 2 0.0353651
LHFPL2 lipoma HMGIC fusion partner-like 2 0.0340376
MYO5B myosin VB 0.0336158
ELOF1 elongation factor 1 homolog (S. cerevisiae) 0.0335846
FNIP2 folliculin interacting protein 2 0.0330903
EREG epiregulin 0.0330396
CANX calnexin 0.031969
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0319627
SEPTIN9 septin 9 0.0316703
DIP2B DIP2 disco-interacting protein 2 homolog B (Drosophila) 0.0312117
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0309532
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 0.0302511
YAP1 Yes-associated protein 1 0.0301978
ANKRD10 ankyrin repeat domain 10 0.0301342
PARP14 poly (ADP-ribose) polymerase family, member 14 0.0293539
BAIAP2L1 BAI1-associated protein 2-like 1 0.0290039
PDZD8 PDZ domain containing 8 0.0289849
LAMA4 laminin, alpha 4 0.0284715
IFNGR1 interferon gamma receptor 1 0.0284097
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0283861
MYOF myoferlin 0.0277723
TMTC2 transmembrane and tetratricopeptide repeat containing 2 0.0270969
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0270449
BAZ1A bromodomain adjacent to zinc finger domain, 1A 0.0268218
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 0.0268123
TNFRSF10B tumor necrosis factor receptor superfamily, member 10b 0.0267239
MPRIP myosin phosphatase Rho interacting protein 0.0265347
SOD2 superoxide dismutase 2, mitochondrial 0.0263478
CTBP2 C-terminal binding protein 2 0.0263347
DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1 0.0263237
BIRC3 baculoviral IAP repeat containing 3 0.0262259
NABP1 nucleic acid binding protein 1 0.0260725
TM4SF19 transmembrane 4 L six family member 19 0.0259473
LAMB3 laminin, beta 3 0.0255949
SLC39A11 solute carrier family 39, member 11 0.0255942
DSCAM Down syndrome cell adhesion molecule 0.0254014
KLF5 Kruppel-like factor 5 (intestinal) 0.0252633
DIAPH1 diaphanous-related formin 1 0.025213
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0250968
ARHGAP26 Rho GTPase activating protein 26 0.0250695
TOP1 topoisomerase (DNA) I 0.0249942
ZBTB20 zinc finger and BTB domain containing 20 0.0249506
CD44 CD44 molecule (Indian blood group) 0.0248748
PDIA3 protein disulfide isomerase family A, member 3 0.0247313
B4GALT5 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 0.0246688
EXOC4 exocyst complex component 4 0.0246117
LDHA lactate dehydrogenase A 0.0245389
CDH17 cadherin 17, LI cadherin (liver-intestine) 0.024382

decreased expression

Symbol Name Standardized Value
ZMYND8 zinc finger, MYND-type containing 8 -0.149653
NDRG1 N-myc downstream regulated 1 -0.105885
PTMA prothymosin, alpha -0.0844042
EPSTI1 epithelial stromal interaction 1 (breast) -0.0840912
TXNIP thioredoxin interacting protein -0.0754557
LYZ lysozyme -0.0730761
NPSR1 neuropeptide S receptor 1 -0.0608658
EGR1 early growth response 1 -0.0564864
H1-0 H1.0 linker histone -0.048836
N4BP2L2 NEDD4 binding protein 2-like 2 -0.0471052
LOC102724023 ES1 protein homolog, mitochondrial -0.0458116
PLA2G2A phospholipase A2, group IIA (platelets, synovial fluid) -0.045408
PARP4 poly (ADP-ribose) polymerase family, member 4 -0.0427484
WDR45B WD repeat domain 45B -0.0411956
SYNE2 spectrin repeat containing, nuclear envelope 2 -0.0404284
IGFBP3 insulin-like growth factor binding protein 3 -0.0401937
NT5C3A 5'-nucleotidase, cytosolic IIIA -0.0396598
RHOBTB3 Rho-related BTB domain containing 3 -0.0392164
TPT1 tumor protein, translationally-controlled 1 -0.0391064
HLA-B major histocompatibility complex, class I, B -0.0379432
CHST11 carbohydrate (chondroitin 4) sulfotransferase 11 -0.03719
XAF1 XIAP associated factor 1 -0.0365866
STS steroid sulfatase (microsomal), isozyme S -0.0351912
MPHOSPH8 M-phase phosphoprotein 8 -0.0346114
ATP2C2 ATPase, Ca++ transporting, type 2C, member 2 -0.0344952
PATJ PATJ crumbs cell polarity complex component -0.0334781
ZKSCAN1 zinc finger with KRAB and SCAN domains 1 -0.0333199
STAT1 signal transducer and activator of transcription 1, 91kDa -0.0332567
RPL35A ribosomal protein L35a -0.0330543
CCNL1 cyclin L1 -0.0330517
NKD1 naked cuticle homolog 1 (Drosophila) -0.0321805
ZFP36L1 ZFP36 ring finger protein-like 1 -0.0318868
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.031555
RNF149 ring finger protein 149 -0.0313255
RBM39 RNA binding motif protein 39 -0.0302776
PMP22 peripheral myelin protein 22 -0.0301276
SREBF2 sterol regulatory element binding transcription factor 2 -0.0294333
PCK1 phosphoenolpyruvate carboxykinase 1 (soluble) -0.028943
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.0287129
RABGAP1L RAB GTPase activating protein 1-like -0.0285123
ELF3 E74-like factor 3 (ets domain transcription factor, epithelial-specific ) -0.0281983
PLSCR1 phospholipid scramblase 1 -0.0280328
SPATA13 spermatogenesis associated 13 -0.0279142
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0278595
TNS4 tensin 4 -0.026138
KLF6 Kruppel-like factor 6 -0.026101
RAB11FIP1 RAB11 family interacting protein 1 (class I) -0.0256847
TMEM62 transmembrane protein 62 -0.0255505
EFHD2 EF-hand domain family, member D2 -0.0253491
ZDHHC20 zinc finger, DHHC-type containing 20 -0.0248821
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0247611
SCARB1 scavenger receptor class B, member 1 -0.0247276
MACC1 metastasis associated in colon cancer 1 -0.0246983
RPL34 ribosomal protein L34 -0.0243109
CSTB cystatin B (stefin B) -0.0240381
KLHL24 kelch-like family member 24 -0.0238383
DYNC2I1 dynein 2 intermediate chain 1 -0.0232651
PTEN phosphatase and tensin homolog -0.0231967
IL20RA interleukin 20 receptor, alpha -0.0229757
S100A6 S100 calcium binding protein A6 -0.0227403
SSH2 slingshot protein phosphatase 2 -0.022669
UBR2 ubiquitin protein ligase E3 component n-recognin 2 -0.0226655
GCC2 GRIP and coiled-coil domain containing 2 -0.0225891
TAOK3 TAO kinase 3 -0.0221688
GNPDA1 glucosamine-6-phosphate deaminase 1 -0.0220044
SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 -0.0219293
NPEPPS aminopeptidase puromycin sensitive -0.0218997
S100A9 S100 calcium binding protein A9 -0.02181
MAP3K20 mitogen-activated protein kinase kinase kinase 20 -0.0217746
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) -0.0215955
APOL6 apolipoprotein L, 6 -0.0215338
PRKCA protein kinase C, alpha -0.0212056
NEDD9 neural precursor cell expressed, developmentally down-regulated 9 -0.0211779
GOLPH3L golgi phosphoprotein 3-like -0.021169
TM4SF1 transmembrane 4 L six family member 1 -0.0210219
ANXA3 annexin A3 -0.0207439
NCOR1 nuclear receptor corepressor 1 -0.0204847
GRK3 G protein-coupled receptor kinase 3 -0.0204772
ANKHD1 ankyrin repeat and KH domain containing 1 -0.0203512
RBCK1 RanBP-type and C3HC4-type zinc finger containing 1 -0.0201842
TMSB10 thymosin beta 10 -0.0201729
CPEB4 cytoplasmic polyadenylation element binding protein 4 -0.0201357
ETS2 v-ets avian erythroblastosis virus E26 oncogene homolog 2 -0.0200915
ACTN4 actinin, alpha 4 -0.0200445
ALPK1 alpha-kinase 1 -0.0200231
EGLN3 egl-9 family hypoxia-inducible factor 3 -0.0199643
CTSD cathepsin D -0.0199229
H3-3B H3.3 histone B -0.0197864
LY6E lymphocyte antigen 6 complex, locus E -0.0197716
TPM4 tropomyosin 4 -0.0197588
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0197176
SMAP2 small ArfGAP2 -0.0196851
UBC ubiquitin C -0.0196173
SLC38A1 solute carrier family 38, member 1 -0.0193361
GGNBP2 gametogenetin binding protein 2 -0.0192289
VEGFA vascular endothelial growth factor A -0.0192037
ATF4 activating transcription factor 4 -0.0191649
CEP95 centrosomal protein 95kDa -0.0191019
NKTR natural killer cell triggering receptor -0.0190812
BACE2 beta-site APP-cleaving enzyme 2 -0.0189688