HCC-33 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description cell line derived from lung (Cancer Cell Line Encyclopedia)
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Genes

61 genes with high or low copy number in HCC-33 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
ANKLE2 ankyrin repeat and LEM domain containing 2 4.51153
LRCOL1 leucine rich colipase-like 1 4.51153
GALNT9 polypeptide N-acetylgalactosaminyltransferase 9 4.51153
POLE polymerase (DNA directed), epsilon, catalytic subunit 4.51153
ISG15 ISG15 ubiquitin-like modifier 4.51153
AGRN agrin 4.51153
NOC2L nucleolar complex associated 2 homolog (S. cerevisiae) 4.51153
RNF223 ring finger protein 223 4.51153
GOLGA3 golgin A3 4.51153
FBRSL1 fibrosin-like 1 4.51153
PGAM5 phosphoglycerate mutase family member 5 4.51153
DDX51 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 4.51153
CHFR checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase 4.51153
SAMD11 sterile alpha motif domain containing 11 4.51153
KLHL17 kelch-like family member 17 4.51153
LOC100130238 uncharacterized LOC100130238 4.51153
P2RX2 purinergic receptor P2X, ligand gated ion channel, 2 4.51153
ZNF26 zinc finger protein 26 4.51153
PLEKHN1 pleckstrin homology domain containing, family N member 1 4.51153
NOC4L nucleolar complex associated 4 homolog (S. cerevisiae) 4.51153
PXMP2 peroxisomal membrane protein 2, 22kDa 4.51153
HES4 hes family bHLH transcription factor 4 4.51153
EP400 E1A binding protein p400 3.12177
HES5 hes family bHLH transcription factor 5 3.12177
EP400NL EP400 N-terminal like 3.12177
TNFRSF14 tumor necrosis factor receptor superfamily, member 14 3.12177
TNFRSF18 tumor necrosis factor receptor superfamily, member 18 3.12177
MIR200A microRNA 200a 3.12177
MIR200B microRNA 200b 3.12177
PANK4 pantothenate kinase 4 3.12177
TNFRSF4 tumor necrosis factor receptor superfamily, member 4 3.12177
B3GALT6 UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6 3.12177
UBE2J2 ubiquitin-conjugating enzyme E2, J2 3.12177
C1ORF159 chromosome 1 open reading frame 159 3.12177
TTLL10 tubulin tyrosine ligase-like family member 10 3.12177
ZNF605 zinc finger protein 605 3.12177
FAM132A family with sequence similarity 132, member A 3.12177
MIR429 microRNA 429 3.12177
LOC115110 uncharacterized LOC115110 3.12177
FAM213B family with sequence similarity 213, member B 3.12177
SDF4 stromal cell derived factor 4 3.12177
SNORA49 small nucleolar RNA, H/ACA box 49 3.12177
PLCH2 phospholipase C, eta 2 3.12177
MMEL1 membrane metallo-endopeptidase-like 1 3.12177
TTC34 tetratricopeptide repeat domain 34 3.12177
COL9A2 collagen, type IX, alpha 2 2.3178
ZMPSTE24 zinc metallopeptidase STE24 2.30944
TMCO2 transmembrane and coiled-coil domains 2 2.30944
PPT1 palmitoyl-protein thioesterase 1 2.30944
RLF rearranged L-myc fusion 2.283
CAP1 CAP, adenylate cyclase-associated protein 1 (yeast) 2.283
MFSD2A major facilitator superfamily domain containing 2A 2.25904
TRIT1 tRNA isopentenyltransferase 1 2.24139

low copy number

Symbol Name Standardized Value
FAM71C family with sequence similarity 71, member C -3.83684
SPANXN2 SPANX family, member N2 -3.57558
UBE2NL ubiquitin-conjugating enzyme E2N-like (gene/pseudogene) -3.57558
STK32C serine/threonine kinase 32C -3.2703
JAKMIP3 Janus kinase and microtubule interacting protein 3 -3.24687
DPYSL4 dihydropyrimidinase-like 4 -3.24687
OR51A4 olfactory receptor, family 51, subfamily A, member 4 -2.83827
ALG1L2 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase-like 2 -2.73329