HCC-78 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

177 genes with high or low copy number in HCC-78 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
SLC38A7 solute carrier family 38, member 7 4.51153
GINS3 GINS complex subunit 3 (Psf3 homolog) 4.51153
CNOT1 CCR4-NOT transcription complex, subunit 1 4.51153
NDRG4 NDRG family member 4 4.51153
SNORA46 small nucleolar RNA, H/ACA box 46 4.51153
CCDC113 coiled-coil domain containing 113 4.51153
CSNK2A2 casein kinase 2, alpha prime polypeptide 4.51153
SETD6 SET domain containing 6 4.51153
PRSS54 protease, serine, 54 4.51153
GOT2 glutamic-oxaloacetic transaminase 2, mitochondrial 4.51153

low copy number

Symbol Name Standardized Value
ATP1B4 ATPase, Na+/K+ transporting, beta 4 polypeptide -3.83684
CUL4B cullin 4B -3.83684
LAMP2 lysosomal-associated membrane protein 2 -3.83684
PRPS1 phosphoribosyl pyrophosphate synthetase 1 -3.7119
DCX doublecortin -3.7119
TRPC5OS TRPC5 opposite strand -3.7119
NXF5 nuclear RNA export factor 5 -3.7119
TCEAL6 transcription elongation factor A (SII)-like 6 -3.7119
TCEAL2 transcription elongation factor A (SII)-like 2 -3.7119
PBDC1 polysaccharide biosynthesis domain containing 1 -3.7119
CAPN6 calpain 6 -3.7119
TSC22D3 TSC22 domain family, member 3 -3.7119
ALG13 ALG13, UDP-N-acetylglucosaminyltransferase subunit -3.7119
BEX5 brain expressed, X-linked 5 -3.7119
RNU6-28P RNA, U6 small nuclear 28, pseudogene -3.7119
ARMCX2 armadillo repeat containing, X-linked 2 -3.7119
PAK3 p21 protein (Cdc42/Rac)-activated kinase 3 -3.7119
TMEM255A transmembrane protein 255A -3.7119
ZMAT1 zinc finger, matrin-type 1 -3.7119
LINC00890 long intergenic non-protein coding RNA 890 -3.61078
NXF2 nuclear RNA export factor 2 -3.61078
TMSB15A thymosin beta 15a -3.61078
CHRDL1 chordin-like 1 -3.61078
KCNE5 potassium channel, voltage gated subfamily E regulatory beta subunit 5 -3.61078
TAF9B TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa -3.61078
NXT2 nuclear transport factor 2-like export factor 2 -3.61078
MIR384 microRNA 384 -3.61078
TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 -3.61078
ACSL4 acyl-CoA synthetase long-chain family member 4 -3.61078
CYSLTR1 cysteinyl leukotriene receptor 1 -3.61078
TCP11X2 t-complex 11 family, X-linked 2 -3.61078
MAGEE1 melanoma antigen family E1 -3.61078
P2RY10 purinergic receptor P2Y, G-protein coupled, 10 -3.57558
PGK1 phosphoglycerate kinase 1 -3.57558
LPAR4 lysophosphatidic acid receptor 4 -3.57558
TBX22 T-box 22 -3.57558
MIR4328 microRNA 4328 -3.57558
ITM2A integral membrane protein 2A -3.57558
ZCCHC5 zinc finger, CCHC domain containing 5 -3.57558
PGAM4 phosphoglycerate mutase family member 4 -3.56449
GPR174 G protein-coupled receptor 174 -3.56449
FGF16 fibroblast growth factor 16 -3.56449
ATP7A ATPase, Cu++ transporting, alpha polypeptide -3.56449
COX7B cytochrome c oxidase subunit VIIb -3.56449
HMGN5 high mobility group nucleosome binding domain 5 -3.53061
MAGT1 magnesium transporter 1 -3.53061
SH3BGRL SH3 domain binding glutamate-rich protein like -3.53061
ATRX alpha thalassemia/mental retardation syndrome X-linked -3.50611
SNORA9 small nucleolar RNA, H/ACA box 9 -3.08922
TNMD tenomodulin -3.05881
TSPAN6 tetraspanin 6 -3.05881
SRPX2 sushi-repeat containing protein, X-linked 2 -3.05881
CSTF2 cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa -3.05196
NUP62CL nucleoporin 62kDa C-terminal like -3.05196
TIMM8A translocase of inner mitochondrial membrane 8 homolog A (yeast) -3.05196
HNRNPH2 heterogeneous nuclear ribonucleoprotein H2 (H') -3.05196
RNF128 ring finger protein 128, E3 ubiquitin protein ligase -3.05196
ATG4A autophagy related 4A, cysteine peptidase -3.05196
TBC1D8B TBC1 domain family, member 8B (with GRAM domain) -3.05196
CENPI centromere protein I -3.05196
DRP2 dystrophin related protein 2 -3.05196
PSMD10 proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 -3.05196
MID2 midline 2 -3.05196
ARL13A ADP-ribosylation factor-like 13A -3.05196
RIPPLY1 ripply transcriptional repressor 1 -3.05196
TMEM35 transmembrane protein 35 -3.05196
TEX13B testis expressed 13B -3.05196
BTK Bruton agammaglobulinemia tyrosine kinase -3.05196
ZCCHC16 zinc finger, CCHC domain containing 16 -3.05196
TAF7L TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa -3.05196
VSIG1 V-set and immunoglobulin domain containing 1 -3.05196
PIH1D3 PIH1 domain containing 3 -3.05196
RPL36A-HNRNPH2 RPL36A-HNRNPH2 readthrough -3.05196
NOX1 NADPH oxidase 1 -3.05196
XKRX XK, Kell blood group complex subunit-related, X-linked -3.05196
GLA galactosidase, alpha -3.05196
TRMT2B tRNA methyltransferase 2 homolog B (S. cerevisiae) -3.05196
TRPC5 transient receptor potential cation channel, subfamily C, member 5 -3.05196
MUM1L1 melanoma associated antigen (mutated) 1-like 1 -3.05196
ARMCX6 armadillo repeat containing, X-linked 6 -3.05196
RBM41 RNA binding motif protein 41 -3.05196
CXORF57 chromosome X open reading frame 57 -3.05196
RPL36A ribosomal protein L36a -3.05196
ARMCX1 armadillo repeat containing, X-linked 1 -3.05196
ARMCX3 armadillo repeat containing, X-linked 3 -3.05196
ARMCX4 armadillo repeat containing, X-linked 4 -3.05196
SERPINA7 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7 -3.05196
MIR1256 microRNA 1256 -3.0433
TMSB15B thymosin beta 15B -3.03592
GLRA4 glycine receptor, alpha 4 -3.03592
MORF4L2-AS1 MORF4L2 antisense RNA 1 -3.03592
SNORD96B small nucleolar RNA, C/D box 96B -3.03592
H2BFXP H2B histone family, member X, pseudogene -3.03592
ESX1 ESX homeobox 1 -3.03592
MORF4L2 mortality factor 4 like 2 -3.03592
TMEM164 transmembrane protein 164 -3.03592
H2BFWT H2B histone family, member W, testis-specific -3.03592
H2BFM H2B histone family, member M -3.03592
TMEM31 transmembrane protein 31 -3.03592
ZCCHC18 zinc finger, CCHC domain containing 18 -3.03592
PCDH19 protocadherin 19 -3.03592
LOC286437 uncharacterized LOC286437 -3.03592
SYTL4 synaptotagmin-like 4 -3.03592
TCEAL4 transcription elongation factor A (SII)-like 4 -3.03592
FAM199X family with sequence similarity 199, X-linked -3.03592
SLC25A53 solute carrier family 25, member 53 -3.03592
AMMECR1 Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 -3.03592
RAB40AL RAB40A, member RAS oncogene family-like -3.03592
GPRASP1 G protein-coupled receptor associated sorting protein 1 -3.03082
GPRASP2 G protein-coupled receptor associated sorting protein 2 -3.03082
NXF4 nuclear RNA export factor 4 pseudogene -3.03082
COL4A6 collagen, type IV, alpha 6 -3.03082
COL4A5 collagen, type IV, alpha 5 -3.03082
MORC4 MORC family CW-type zinc finger 4 -3.03082
ARMCX5 armadillo repeat containing, X-linked 5 -3.03082
CLDN2 claudin 2 -3.03082
ARMCX5-GPRASP2 ARMCX5-GPRASP2 readthrough -3.03082
RGAG1 retrotransposon gag domain containing 1 -3.03082
GUCY2F guanylate cyclase 2F, retinal -3.03082
BHLHB9 basic helix-loop-helix domain containing, class B, 9 -3.03082
IRS4 insulin receptor substrate 4 -3.03082
TCEAL7 transcription elongation factor A (SII)-like 7 -3.00044
RAB40A RAB40A, member RAS oncogene family -3.00044
WBP5 WW domain binding protein 5 -3.00044
RAB9B RAB9B, member RAS oncogene family -3.00044
TCEAL5 transcription elongation factor A (SII)-like 5 -3.00044
TCEAL8 transcription elongation factor A (SII)-like 8 -3.00044
PLP1 proteolipid protein 1 -3.00044
TCEAL1 transcription elongation factor A (SII)-like 1 -3.00044
BEX1 brain expressed, X-linked 1 -3.00044
BEX4 brain expressed, X-linked 4 -3.00044
TCEAL3 transcription elongation factor A (SII)-like 3 -3.00044
LINC00630 long intergenic non-protein coding RNA 630 -3.00044
MIR3978 microRNA 3978 -3.00044
BEX2 brain expressed X-linked 2 -3.00044
NXF3 nuclear RNA export factor 3 -3.00044
FAM46D family with sequence similarity 46, member D -2.99615
BRWD3 bromodomain and WD repeat domain containing 3 -2.99615
NGFRAP1 nerve growth factor receptor (TNFRSF16) associated protein 1 -2.969
LOC643486 -2.969
NRK Nik related kinase -2.969
XRCC6P5 X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 5 -2.9644
CHM choroideremia (Rab escort protein 1) -2.94448
NAP1L3 nucleosome assembly protein 1-like 3 -2.93929
IL1RAPL2 interleukin 1 receptor accessory protein-like 2 -2.93929
POU3F4 POU class 3 homeobox 4 -2.93929
PCDH11X protocadherin 11 X-linked -2.93929
TEX13A testis expressed 13A -2.93929
DACH2 dachshund family transcription factor 2 -2.91868
TGIF2LX TGFB-induced factor homeobox 2-like, X-linked -2.91868
ZNF711 zinc finger protein 711 -2.91868
POF1B premature ovarian failure, 1B -2.91868
FAM133A family with sequence similarity 133, member A -2.91612
RPS6KA6 ribosomal protein S6 kinase, 90kDa, polypeptide 6 -2.91612
UBE2DNL ubiquitin-conjugating enzyme E2D N-terminal like (pseudogene) -2.91612
SATL1 spermidine/spermine N1-acetyl transferase-like 1 -2.91612
PABPC5 poly(A) binding protein, cytoplasmic 5 -2.89302
HDX highly divergent homeobox -2.89302
CPXCR1 CPX chromosome region, candidate 1 -2.89302
KLHL4 kelch-like family member 4 -2.89201
APOOL apolipoprotein O-like -2.89201
CYLC1 cylicin, basic protein of sperm head cytoskeleton 1 -2.89201
SSX6 synovial sarcoma, X breakpoint 6 (pseudogene) -2.87269
SPACA5 sperm acrosome associated 5 -2.87269
ZNF630 zinc finger protein 630 -2.87269
RPA4 replication protein A4, 30kDa -2.86559
DIAPH2 diaphanous-related formin 2 -2.82214