HCC33 Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description cell line derived from lung (Cancer Cell Line Encyclopedia)
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Genes

694 genes with high or low copy number in HCC33 relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
SAMD11 sterile alpha motif domain containing 11 3.2803
ANKLE2 ankyrin repeat and LEM domain containing 2 3.2803
POLE polymerase (DNA directed), epsilon, catalytic subunit 3.2803
LOC100129345 uncharacterized LOC100129345 3.2803
DDX51 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 3.2803
SCLT1 sodium channel and clathrin linker 1 3.2803
LRCOL1 leucine rich colipase-like 1 3.2803
FAM132A family with sequence similarity 132, member A 3.2803
SDF4 stromal cell derived factor 4 3.2803
B3GALT6 UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6 3.2803
TNFRSF4 tumor necrosis factor receptor superfamily, member 4 3.2803
LIN52 lin-52 DREAM MuvB core complex component 3.2803
CHFR checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase 3.2803
GALNT9 polypeptide N-acetylgalactosaminyltransferase 9 3.2803
P2RX2 purinergic receptor P2X, ligand gated ion channel, 2 3.2803
ZNF26 zinc finger protein 26 3.2803
PERM1 PPARGC1 and ESRR induced regulator, muscle 1 3.2803
C1ORF159 chromosome 1 open reading frame 159 3.2803
PLEKHN1 pleckstrin homology domain containing, family N member 1 3.2803
GOLGA3 golgin A3 3.2803
FBRSL1 fibrosin-like 1 3.2803
SNORA49 small nucleolar RNA, H/ACA box 49 3.2803
PXMP2 peroxisomal membrane protein 2, 22kDa 3.2803
LOC100130238 uncharacterized LOC100130238 3.2803
UBE2J2 ubiquitin-conjugating enzyme E2, J2 3.2803
NOC4L nucleolar complex associated 4 homolog (S. cerevisiae) 3.2803
PGAM5 phosphoglycerate mutase family member 5 3.2803
KLHL17 kelch-like family member 17 3.2803
PPT1 palmitoyl-protein thioesterase 1 3.2803
CACNA1C calcium channel, voltage-dependent, L type, alpha 1C subunit 3.2803
LINC01342 long intergenic non-protein coding RNA 1342 3.2803
NOC2L nucleolar complex associated 2 homolog (S. cerevisiae) 3.2803
EP400 E1A binding protein p400 3.2803
RNF223 ring finger protein 223 3.2803
PLCH2 phospholipase C, eta 2 3.2803
AGRN agrin 3.2803
EP400NL EP400 N-terminal like 3.2803
HES4 hes family bHLH transcription factor 4 3.2803
PANK4 pantothenate kinase 4 3.2803
ISG15 ISG15 ubiquitin-like modifier 3.2803
LOC392232 transient receptor potential cation channel, subfamily A, member 1 pseudogene 2.79997
HES5 hes family bHLH transcription factor 5 2.78272
OCM2 oncomodulin 2 2.7827
FAM213B family with sequence similarity 213, member B 2.78256
TTC34 tetratricopeptide repeat domain 34 2.78252
LOC115110 uncharacterized LOC115110 2.78249
TNFRSF14 tumor necrosis factor receptor superfamily, member 14 2.78249
MMEL1 membrane metallo-endopeptidase-like 1 2.78233
COL9A2 collagen, type IX, alpha 2 2.69309
ZMPSTE24 zinc metallopeptidase STE24 2.69287
TMCO2 transmembrane and coiled-coil domains 2 2.6926
CAP1 CAP, adenylate cyclase-associated protein 1 (yeast) 2.60692
TRIT1 tRNA isopentenyltransferase 1 2.60675
MYCL v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog 2.60671
MFSD2A major facilitator superfamily domain containing 2A 2.60671
MIR200B microRNA 200b 2.59998
ZNF605 zinc finger protein 605 2.59998
TTLL10 tubulin tyrosine ligase-like family member 10 2.59998
BANK1 B-cell scaffold protein with ankyrin repeats 1 2.59998
MIR429 microRNA 429 2.59998
TNFRSF18 tumor necrosis factor receptor superfamily, member 18 2.59998
MIR200A microRNA 200a 2.59998
ATP11A ATPase, class VI, type 11A 2.59994
CDH7 cadherin 7, type 2 2.59506
SLC19A1 solute carrier family 19 (folate transporter), member 1 2.49149
COL18A1 collagen, type XVIII, alpha 1 2.47965
MIR181A1HG MIR181A1 host gene 2.46417
RLF rearranged L-myc fusion 2.40879
PIP5K1B phosphatidylinositol-4-phosphate 5-kinase, type I, beta 2.36874
SELT selenoprotein T 2.32343
DCDC2 doublecortin domain containing 2 2.30241
TSHR thyroid stimulating hormone receptor 2.30063
C1ORF177 chromosome 1 open reading frame 177 2.29218
LTBR lymphotoxin beta receptor (TNFR superfamily, member 3) 2.2612
SCNN1A sodium channel, non voltage gated 1 alpha subunit 2.26114
TNFRSF1A tumor necrosis factor receptor superfamily, member 1A 2.26112
PLEKHG6 pleckstrin homology domain containing, family G (with RhoGef domain) member 6 2.26112
CD9 CD9 molecule 2.26108
VAMP1 vesicle-associated membrane protein 1 (synaptobrevin 1) 2.26064
SCARNA10 small Cajal body-specific RNA 10 2.26048
NCAPD2 non-SMC condensin I complex, subunit D2 2.26048
MRPL51 mitochondrial ribosomal protein L51 2.26048
GAPDH glyceraldehyde-3-phosphate dehydrogenase 2.26046
IFFO1 intermediate filament family orphan 1 2.26046
CETN1 centrin, EF-hand protein, 1 2.25172
LHFPL3 lipoma HMGIC fusion partner-like 3 2.23929
LRRC23 leucine rich repeat containing 23 2.23016
LAG3 lymphocyte-activation gene 3 2.22511
PTMS parathymosin 2.22511
CD4 CD4 molecule 2.22489
P3H3 prolyl 3-hydroxylase 3 2.22487
GPR162 G protein-coupled receptor 162 2.22487
GNB3 guanine nucleotide binding protein (G protein), beta polypeptide 3 2.22487
SPSB2 splA/ryanodine receptor domain and SOCS box containing 2 2.22471
TPI1 triosephosphate isomerase 1 2.22471
USP5 ubiquitin specific peptidase 5 (isopeptidase T) 2.22471
CDCA3 cell division cycle associated 3 2.22471
SPATA17 spermatogenesis associated 17 2.20946
NTF3 neurotrophin 3 2.19259
CFHR4 complement factor H-related 4 2.19109
GAS6-AS2 GAS6 antisense RNA 2 (head to head) 2.19071
GAS6 growth arrest-specific 6 2.18205
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 2.16047
SCARNA11 small Cajal body-specific RNA 11 2.14026
NOP2 NOP2 nucleolar protein 2.14026
LPAR5 lysophosphatidic acid receptor 5 2.14026
CHD4 chromodomain helicase DNA binding protein 4 2.14026
ACRBP acrosin binding protein 2.14014
PIANP PILR alpha associated neural protein 2.14013
ING4 inhibitor of growth family, member 4 2.14007
COPS7A COP9 signalosome subunit 7A 2.13642
DSTNP2 destrin (actin depolymerizing factor) pseudogene 2 2.13425
RPL13P5 ribosomal protein L13 pseudogene 5 2.13026
MLF2 myeloid leukemia factor 2 2.12572
NANOGNB NANOG neighbor homeobox 2.11043
NANOG Nanog homeobox 2.11043
CLEC4C C-type lectin domain family 4, member C 2.11038
C3AR1 complement component 3a receptor 1 2.11037
FOXJ2 forkhead box J2 2.11037
NECAP1 NECAP endocytosis associated 1 2.11033
EMP1 epithelial membrane protein 1 2.10927
DDX47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 2.10877
MIR614 microRNA 614 2.10851
LOC100506314 uncharacterized LOC100506314 2.10846
GPRC5D G protein-coupled receptor, class C, group 5, member D 2.10841
KIAA1467 KIAA1467 2.10825
HTR7P1 5-hydroxytryptamine (serotonin) receptor 7 pseudogene 1 2.10817
GSG1 germ cell associated 1 2.10807
RNU6-64P RNA, U6 small nuclear 64, pseudogene 2.10664
MIR5007 microRNA 5007 2.10646
MIR1297 microRNA 1297 2.10116
CD163 CD163 molecule 2.10051
GDF3 growth differentiation factor 3 2.10042
DPPA3 developmental pluripotency associated 3 2.10042
APOBEC1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 2.10042
CD163L1 CD163 molecule-like 1 2.10018
CHAMP1 chromosome alignment maintaining phosphoprotein 1 2.09819
KCNA1 potassium channel, voltage gated shaker related subfamily A, member 1 2.0849
LINC00565 long intergenic non-protein coding RNA 565 2.08481
KCNA5 potassium channel, voltage gated shaker related subfamily A, member 5 2.08467
LINC00552 long intergenic non-protein coding RNA 552 2.07931
LOC574538 uncharacterized LOC574538 2.07903
GRK1 G protein-coupled receptor kinase 1 2.07832
SLC6A12 solute carrier family 6 (neurotransmitter transporter), member 12 2.07827
TMEM255B transmembrane protein 255B 2.07822
GAS6-AS1 GAS6 antisense RNA 1 2.07811
ATP4B ATPase, H+/K+ exchanging, beta polypeptide 2.07713
B4GALNT3 beta-1,4-N-acetyl-galactosaminyl transferase 3 2.07554
ANO2 anoctamin 2, calcium activated chloride channel 2.04623
NINJ2 ninjurin 2 2.04433
ZNF384 zinc finger protein 384 2.04292
BRAF B-Raf proto-oncogene, serine/threonine kinase 2.04117
CD27-AS1 CD27 antisense RNA 1 2.03804
TAPBPL TAP binding protein-like 2.03804
CD27 CD27 molecule 2.03804
CDC16 cell division cycle 16 2.03526
UPF3A UPF3 regulator of nonsense transcripts homolog A (yeast) 2.03459
LINC00558 long intergenic non-protein coding RNA 558 2.03307
SPACA7 sperm acrosome associated 7 2.03278
TUBGCP3 tubulin, gamma complex associated protein 3 2.03207
SOX1 SRY (sex determining region Y)-box 1 2.02717
HOPX HOP homeobox 2.02584
LPCAT3 lysophosphatidylcholine acyltransferase 3 2.02456
C1S complement component 1, s subcomponent 2.02456
C1RL complement component 1, r subcomponent-like 2.02455
RBP5 retinol binding protein 5, cellular 2.02455
EMG1 EMG1 N1-specific pseudouridine methyltransferase 2.02455
C1RL-AS1 C1RL antisense RNA 1 2.02455
C1R complement component 1, r subcomponent 2.02455
PHB2 prohibitin 2 2.02451
SCARNA12 small Cajal body-specific RNA 12 2.02451
ENO2 enolase 2 (gamma, neuronal) 2.0245
MIR141 microRNA 141 2.02446
MIR200C microRNA 200c 2.02446
PTPN6 protein tyrosine phosphatase, non-receptor type 6 2.02446
ACSM4 acyl-CoA synthetase medium-chain family member 4 2.02437
C12ORF57 chromosome 12 open reading frame 57 2.02429
ATN1 atrophin 1 2.02429
EDNRB endothelin receptor type B 2.02266
PCDH20 protocadherin 20 2.019
NDUFA9 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa 2.01837
DYRK4 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4 2.01836
AKAP3 A kinase (PRKA) anchor protein 3 2.01832
LINC01559 long intergenic non-protein coding RNA 1559 2.01814
RPL13AP20 ribosomal protein L13a pseudogene 20 2.01806
DIAPH3-AS2 DIAPH3 antisense RNA 2 2.01752
TDRD3 tudor domain containing 3 2.01701
DIAPH3-AS1 DIAPH3 antisense RNA 1 2.01661
HEBP1 heme binding protein 1 2.01621
ATP11AUN ATP11A upstream neighbor 2.0146
MIR3169 microRNA 3169 2.01346
DIAPH3 diaphanous-related formin 3 2.0134
RAD51AP1 RAD51 associated protein 1 2.00846
C12ORF4 chromosome 12 open reading frame 4 2.00846
FGF6 fibroblast growth factor 6 2.00837
LAMP1 lysosomal-associated membrane protein 1 2.00656
GRTP1 growth hormone regulated TBC protein 1 2.00656
CUL4A cullin 4A 2.00639
DCUN1D2 DCN1, defective in cullin neddylation 1, domain containing 2 2.00428
GALNT8 polypeptide N-acetylgalactosaminyltransferase 8 1.99854
KCNA6 potassium channel, voltage gated shaker related subfamily A, member 6 1.99854
TFDP1 transcription factor Dp-1 1.99316
ADPRHL1 ADP-ribosylhydrolase like 1 1.99141
TMCO3 transmembrane and coiled-coil domains 3 1.98502
LINC00331 long intergenic non-protein coding RNA 331 1.98265
RNU6-71P RNA, U6 small nuclear 71, pseudogene 1.97921
PCDH17 protocadherin 17 1.97816
LINC00550 long intergenic non-protein coding RNA 550 1.97788
LOC100507424 uncharacterized LOC100507424 1.97573
RHNO1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 1.97559
FOXM1 forkhead box M1 1.97524
ATXN8OS ATXN8 opposite strand (non-protein coding) 1.97457
VWF von Willebrand factor 1.97412
MIR3665 microRNA 3665 1.97405
SCEL sciellin 1.97386
SLAIN1 SLAIN motif family, member 1 1.97335
LINC00446 long intergenic non-protein coding RNA 446 1.97301
DCP1B decapping mRNA 1B 1.96793
LINC00940 long intergenic non-protein coding RNA 940 1.96727
MIR3649 microRNA 3649 1.96713
LINC00942 long intergenic non-protein coding RNA 942 1.96654
FBXL14 F-box and leucine-rich repeat protein 14 1.96609
WNT5B wingless-type MMTV integration site family, member 5B 1.96531
PRR20B proline rich 20B 1.96327
PRR20C proline rich 20C 1.96327
PRR20D proline rich 20D 1.96327
PRR20E proline rich 20E 1.96327
PRR20A proline rich 20A 1.96327
TEX29 testis expressed 29 1.95319
PEX5 peroxisomal biogenesis factor 5 1.94973
CLSTN3 calsyntenin 3 1.94973
GPRC5A G protein-coupled receptor, class C, group 5, member A 1.94953
FKBP4 FK506 binding protein 4, 59kDa 1.94884
NRIP2 nuclear receptor interacting protein 2 1.94884
ITFG2 integrin alpha FG-GAP repeat containing 2 1.94884
LOC283440 uncharacterized LOC283440 1.94884
CACNA1C-AS1 CACNA1C antisense RNA 1 1.94874
PCDH9-AS2 PCDH9 antisense RNA 2 1.94477
LINC00348 long intergenic non-protein coding RNA 348 1.93963
IRG1 immunoresponsive 1 homolog (mouse) 1.93777
TRIM6 tripartite motif containing 6 1.9375
TRIM6-TRIM34 TRIM6-TRIM34 readthrough 1.9375
BTF3P11 basic transcription factor 3 pseudogene 11 1.93746
FGF23 fibroblast growth factor 23 1.93631
LRCH1 leucine-rich repeats and calponin homology (CH) domain containing 1 1.93127
PCDH9-AS3 PCDH9 antisense RNA 3 1.92884
MCF2L-AS1 MCF2L antisense RNA 1 1.9283
SLITRK1 SLIT and NTRK-like family, member 1 1.92686
MYCBP2-AS1 MYCBP2 antisense RNA 1 1.92636
FBXL3 F-box and leucine-rich repeat protein 3 1.92503
CLN5 ceroid-lipofuscinosis, neuronal 5 1.92486
PROZ protein Z, vitamin K-dependent plasma glycoprotein 1.92313
F7 coagulation factor VII (serum prothrombin conversion accelerator) 1.923
F10 coagulation factor X 1.923
UGT2B17 UDP glucuronosyltransferase 2 family, polypeptide B17 1.92268
CCDC77 coiled-coil domain containing 77 1.92265
CACNA1C-IT3 CACNA1C intronic transcript 3 1.92198
NDFIP2-AS1 NDFIP2 antisense RNA 1 1.92176
KDM5A lysine (K)-specific demethylase 5A 1.92157
RBM26-AS1 RBM26 antisense RNA 1 1.92093
PARP11 poly (ADP-ribose) polymerase family, member 11 1.92066
C8ORF37-AS1 C8orf37 antisense RNA 1 1.917
GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B 1.91586
POU4F1 POU class 4 homeobox 1 1.91168
RNF219 ring finger protein 219 1.9116
ING1 inhibitor of growth family, member 1 1.90973
PRMT8 protein arginine methyltransferase 8 1.90068
LRTM2 leucine-rich repeats and transmembrane domains 2 1.90045
ADIPOR2 adiponectin receptor 2 1.90042
CRACR2A calcium release activated channel regulator 2A 1.89973
RNU6-69P RNA, U6 small nuclear 69, pseudogene 1.89444
ARHGEF7 Rho guanine nucleotide exchange factor (GEF) 7 1.89163
RASA3 RAS p21 protein activator 3 1.89004
SLITRK6 SLIT and NTRK-like family, member 6 1.88834
RAD52 RAD52 homolog (S. cerevisiae) 1.8872
CACNA1C-AS4 CACNA1C antisense RNA 4 1.88615
LINC00333 long intergenic non-protein coding RNA 333 1.88389
PCID2 PCI domain containing 2 1.88129
KCTD12 potassium channel tetramerization domain containing 12 1.87684
MYCBP2 MYC binding protein 2, E3 ubiquitin protein ligase 1.87533
TIGAR TP53 induced glycolysis regulatory phosphatase 1.8741
NDFIP2 Nedd4 family interacting protein 2 1.86742
ANKRD10 ankyrin repeat domain 10 1.86625
LINC00346 long intergenic non-protein coding RNA 346 1.86625
ERG v-ets avian erythroblastosis virus E26 oncogene homolog 1.86572
RBM26 RNA binding motif protein 26 1.86277
SPRY2 sprouty homolog 2 (Drosophila) 1.86085
ITGA10 integrin, alpha 10 1.85551
TSPAN9 tetraspanin 9 1.85373
TULP3 tubby like protein 3 1.85013
KLHL1 kelch-like family member 1 1.84894
RNU6-53P RNA, U6 small nuclear 53, pseudogene 1.84727
CTAGE11P CTAGE family, member 11, pseudogene 1.84702
RAP2A RAP2A, member of RAS oncogene family 1.84588
PCCA-AS1 PCCA antisense RNA 1 1.8377
TMTC4 transmembrane and tetratricopeptide repeat containing 4 1.83766
LINC00381 long intergenic non-protein coding RNA 381 1.83268
MBNL2 muscleblind-like splicing regulator 2 1.82532
CARKD carbohydrate kinase domain containing 1.82293
CARS2 cysteinyl-tRNA synthetase 2, mitochondrial (putative) 1.82234
LINC00351 long intergenic non-protein coding RNA 351 1.82128
RAB20 RAB20, member RAS oncogene family 1.81867
UCHL3 ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) 1.81517
LMO7DN LMO7 downstream neighbor 1.81393
SNX6 sorting nexin 6 1.81316
LINC00347 long intergenic non-protein coding RNA 347 1.81073
WNK1 WNK lysine deficient protein kinase 1 1.80207
LMO7 LIM domain 7 1.7952
SI sucrase-isomaltase (alpha-glucosidase) 1.79433
GGACT gamma-glutamylamine cyclotransferase 1.79306
CACNA2D4 calcium channel, voltage-dependent, alpha 2/delta subunit 4 1.79275
COL4A2-AS1 COL4A2 antisense RNA 1 1.79099
COL4A2 collagen, type IV, alpha 2 1.78589
RNF113B ring finger protein 113B 1.78441
PCCA propionyl CoA carboxylase, alpha polypeptide 1.78431
OR7E156P olfactory receptor, family 7, subfamily E, member 156 pseudogene 1.78355
MIR3170 microRNA 3170 1.7832
ZIC5 Zic family member 5 1.78299
ZIC2 Zic family member 2 1.78299
ATF7IP activating transcription factor 7 interacting protein 1.77695
RYR3 ryanodine receptor 3 1.77409
TBC1D4 TBC1 domain family, member 4 1.77311
ABHD13 abhydrolase domain containing 13 1.76267
ERC1 ELKS/RAB6-interacting/CAST family member 1 1.75421
RNF219-AS1 RNF219 antisense RNA 1 1.75254
MIR2681 microRNA 2681 1.75057
MIR4705 microRNA 4705 1.74986
ITGBL1 integrin, beta-like 1 (with EGF-like repeat domains) 1.74735
GPR183 G protein-coupled receptor 183 1.74689
GPR18 G protein-coupled receptor 18 1.74679
COL4A1 collagen, type IV, alpha 1 1.74645
MGST1 microsomal glutathione S-transferase 1 1.74603
LINC00359 long intergenic non-protein coding RNA 359 1.74528
LINC00433 long intergenic non-protein coding RNA 433 1.74452
NALCN-AS1 NALCN antisense RNA 1 1.74398
IPO5 importin 5 1.73981
METTL21C methyltransferase like 21C 1.73776
TPP2 tripeptidyl peptidase II 1.73759
OXGR1 oxoglutarate (alpha-ketoglutarate) receptor 1 1.73495
STK24 serine/threonine kinase 24 1.73487
SLC15A1 solute carrier family 15 (oligopeptide transporter), member 1 1.73444
WBP11 WW domain binding protein 11 1.7338
HIST4H4 histone cluster 4, H4 1.7338
H2AFJ H2A histone family, member J 1.7338
JAK2 Janus kinase 2 1.73339
GUCY2C guanylate cyclase 2C 1.73335
PLBD1 phospholipase B domain containing 1 1.73321
IQSEC3 IQ motif and Sec7 domain 3 1.73144
MZT1 mitotic spindle organizing protein 1 1.72511
BORA bora, aurora kinase A activator 1.72422
DIS3 DIS3 exosome endoribonuclease and 3'-5' exoribonuclease 1.72407
DACH1 dachshund family transcription factor 1 1.72304
LIG4 ligase IV, DNA, ATP-dependent 1.72013
PARD3B par-3 family cell polarity regulator beta 1.71327
METTL21EP methyltransferase like 21E, pseudogene 1.70806
ERCC5 excision repair cross-complementation group 5 1.70806
BIVM-ERCC5 BIVM-ERCC5 readthrough 1.70806
FGF14-IT1 FGF14 intronic transcript 1 1.70769
FGF14-AS2 FGF14 antisense RNA 2 1.70769
MIR4306 microRNA 4306 1.70531
FKSG29 FKSG29 1.70523
UBAC2-AS1 UBAC2 antisense RNA 1 1.70509
MIR623 microRNA 623 1.70506
STRAP serine/threonine kinase receptor associated protein 1.70488
UBAC2 UBA domain containing 2 1.70463
LMO3 LIM domain only 3 (rhombotin-like 2) 1.70437
LINC00353 long intergenic non-protein coding RNA 353 1.70117
BIVM basic, immunoglobulin-like variable motif containing 1.69687
TEX30 testis expressed 30 1.69685
KDELC1 KDEL (Lys-Asp-Glu-Leu) containing 1 1.69685
CCDC168 coiled-coil domain containing 168 1.69685
GPR180 G protein-coupled receptor 180 1.69362
SMCO3 single-pass membrane protein with coiled-coil domains 3 1.69332
C12ORF60 chromosome 12 open reading frame 60 1.69332
ART4 ADP-ribosyltransferase 4 (Dombrock blood group) 1.69332
LINC00551 long intergenic non-protein coding RNA 551 1.69077
ARGLU1 arginine and glutamate rich 1 1.69038
EFNB2 ephrin-B2 1.69038
LINC00443 long intergenic non-protein coding RNA 443 1.69012
PIBF1 progesterone immunomodulatory binding factor 1 1.68384
COMMD6 COMM domain containing 6 1.68354
CLDN10-AS1 CLDN10 antisense RNA 1 1.67673
SLC10A2 solute carrier family 10 (sodium/bile acid cotransporter), member 2 1.67628
SLITRK5 SLIT and NTRK-like family, member 5 1.67282
MIR4500 microRNA 4500 1.67271
MIR4500HG MIR4500 host gene 1.67215
DOCK9 dedicator of cytokinesis 9 1.67049
CLYBL citrate lyase beta like 1.67025
MIR548AS microRNA 548as 1.66945
KLF12 Kruppel-like factor 12 1.66786
EPS8 epidermal growth factor receptor pathway substrate 8 1.66709
DZIP1 DAZ interacting zinc finger protein 1 1.6651
HS6ST3 heparan sulfate 6-O-sulfotransferase 3 1.66471
RERG RAS-like, estrogen-regulated, growth inhibitor 1.66367
SKP1P2 S-phase kinase-associated protein 1 pseudogene 2 1.66337
CLDN10 claudin 10 1.66321
MYO16-AS1 MYO16 antisense RNA 1 1.66219
LINC00460 long intergenic non-protein coding RNA 460 1.66059
DAOA-AS1 DAOA antisense RNA 1 1.6604
DAOA D-amino acid oxidase activator 1.6604
LRMP lymphoid-restricted membrane protein 1.65847
DCT dopachrome tautomerase 1.65708
TGDS TDP-glucose 4,6-dehydratase 1.65701
ARHGDIB Rho GDP dissociation inhibitor (GDI) beta 1.65624
ERP27 endoplasmic reticulum protein 27 1.65624
PDE6H phosphodiesterase 6H, cGMP-specific, cone, gamma 1.65621
MGP matrix Gla protein 1.65617
DERA deoxyribose-phosphate aldolase (putative) 1.65429
LINC00343 long intergenic non-protein coding RNA 343 1.65396
SOX21 SRY (sex determining region Y)-box 21 1.65304
UGGT2 UDP-glucose glycoprotein glucosyltransferase 2 1.65246
GPC6-AS2 GPC6 antisense RNA 2 1.65108
MORC4 MORC family CW-type zinc finger 4 1.64699
TNFSF13B tumor necrosis factor (ligand) superfamily, member 13b 1.64647
PTPRO protein tyrosine phosphatase, receptor type, O 1.64322
YARS2 tyrosyl-tRNA synthetase 2, mitochondrial 1.63797
FGD4 FYVE, RhoGEF and PH domain containing 4 1.63775
IRS2 insulin receptor substrate 2 1.63223
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 1.63058
RERGL RERG/RAS-like 1.63049
SLC2A14 solute carrier family 2 (facilitated glucose transporter), member 14 1.62932
MAPK10 mitogen-activated protein kinase 10 1.62839
FARP1 FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) 1.62727
BAHCC1 BAH domain and coiled-coil containing 1 1.62526
MYO16 myosin XVI 1.62461
ABCC4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 1.6244
DNAJC3 DnaJ (Hsp40) homolog, subfamily C, member 3 1.61831
SV2C synaptic vesicle glycoprotein 2C 1.61584
DNM1L dynamin 1-like 1.60381
PKP2 plakophilin 2 1.60364
LINC00559 long intergenic non-protein coding RNA 559 1.59907
NALCN sodium leak channel, non selective 1.59546
KLF5 Kruppel-like factor 5 (intestinal) 1.59475
FAM155A family with sequence similarity 155, member A 1.59467
MIR3974 microRNA 3974 1.59344
H3F3C H3 histone, family 3C 1.59054
PCDH9 protocadherin 9 1.58007
GPC5-AS1 GPC5 antisense RNA 1 1.56995
TM9SF2 transmembrane 9 superfamily member 2 1.56776
KIAA1551 KIAA1551 1.56023
METTL20 methyltransferase like 20 1.55957
AMN1 antagonist of mitotic exit network 1 homolog (S. cerevisiae) 1.55948
ALG10 ALG10, alpha-1,2-glucosyltransferase 1.5499
BICD1 bicaudal D homolog 1 (Drosophila) 1.54656
MIR622 microRNA 622 1.54564
MCF2L MCF.2 cell line derived transforming sequence-like 1.54558
FGF14 fibroblast growth factor 14 1.54308
DENND5B-AS1 DENND5B antisense RNA 1 1.53185
BCAS1 breast carcinoma amplified sequence 1 1.51583
TEAD4 TEA domain family member 4 1.51415
SYT10 synaptotagmin X 1.51257
TEC tec protein tyrosine kinase 1.50128
LINC00410 long intergenic non-protein coding RNA 410 1.49682
LINGO2 leucine rich repeat and Ig domain containing 2 1.49054
LINC00941 long intergenic non-protein coding RNA 941 1.48243
IPO8 importin 8 1.4644
CAPRIN2 caprin family member 2 1.4644
SLC6A13 solute carrier family 6 (neurotransmitter transporter), member 13 1.46429
SLIT2 slit homolog 2 (Drosophila) 1.46361
FLJ13224 uncharacterized LOC79857 1.46302
FAM60A family with sequence similarity 60, member A 1.463
CAPZA3 capping protein (actin filament) muscle Z-line, alpha 3 1.46174
PLCZ1 phospholipase C, zeta 1 1.46169
DENND5B DENN/MADD domain containing 5B 1.45934
LINC00669 long intergenic non-protein coding RNA 669 1.44906
LINC00379 long intergenic non-protein coding RNA 379 1.44885
UQCRB ubiquinol-cytochrome c reductase binding protein 1.43524
MIR92A1 microRNA 92a-1 1.43269
MIR17 microRNA 17 1.43269
MIR19A microRNA 19a 1.43269
MIR17HG miR-17-92 cluster host gene 1.43269
MIR20A microRNA 20a 1.43269
MIR19B1 microRNA 19b-1 1.43269
MIR18A microRNA 18a 1.43269
DPP10 dipeptidyl-peptidase 10 (non-functional) 1.42677
LOC401134 uncharacterized LOC401134 1.42669
DDX11-AS1 DDX11 antisense RNA 1 1.42527
DDX11 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 1.42517
AEBP2 AE binding protein 2 1.42086
GPC5 glypican 5 1.418
PIK3C2G phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma 1.39898
TSPAN11 tetraspanin 11 1.38462
PARG poly (ADP-ribose) glycohydrolase 1.37318
PARGP1 poly (ADP-ribose) glycohydrolase pseudogene 1 1.37315
BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) 1.37018
PRKG1 protein kinase, cGMP-dependent, type I 1.36102
PLEKHA5 pleckstrin homology domain containing, family A member 5 1.35723
CFH complement factor H 1.35544

low copy number

Symbol Name Standardized Value
PGA4 pepsinogen 4, group I (pepsinogen A) -3.21049
PGA3 pepsinogen 3, group I (pepsinogen A) -3.21049
PRDM16 PR domain containing 16 -3.21049
FERMT1 fermitin family member 1 -3.21049
DPYSL4 dihydropyrimidinase-like 4 -3.21049
MIR646HG MIR646 host gene -3.21039
EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 -3.20978
MRPL19 mitochondrial ribosomal protein L19 -3.20552
PPFIBP2 PTPRF interacting protein, binding protein 2 (liprin beta 2) -3.15458
TBC1D2 TBC1 domain family, member 2 -2.92806
FAM71C family with sequence similarity 71, member C -2.78326
PEX10 peroxisomal biogenesis factor 10 -2.74155
RER1 retention in endoplasmic reticulum sorting receptor 1 -2.74155
C1ORF86 chromosome 1 open reading frame 86 -2.74151
SKI SKI proto-oncogene -2.74151
MTOR-AS1 MTOR antisense RNA 1 -2.67242
ANGPTL7 angiopoietin-like 7 -2.67242
MTOR mechanistic target of rapamycin (serine/threonine kinase) -2.67241
SRM spermidine synthase -2.6724
EXOSC10 exosome component 10 -2.67239
PNMA5 paraneoplastic Ma antigen family member 5 -2.59447
ADGRE2 adhesion G protein-coupled receptor E2 -2.59447
ACTRT2 actin-related protein T2 -2.59447
MIR4251 microRNA 4251 -2.59447
LINC00982 long intergenic non-protein coding RNA 982 -2.59447
KLRC1 killer cell lectin-like receptor subfamily C, member 1 -2.59443
GBE1 glucan (1,4-alpha-), branching enzyme 1 -2.5176
SCARF2 scavenger receptor class F, member 2 -2.49718
TARDBP TAR DNA binding protein -2.46221
MASP2 mannan-binding lectin serine peptidase 2 -2.46221
C1ORF127 chromosome 1 open reading frame 127 -2.46212
TRPM3 transient receptor potential cation channel, subfamily M, member 3 -2.45779
MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) -2.38218
FBXO6 F-box protein 6 -2.38218
FBXO2 F-box protein 2 -2.38218
FBXO44 F-box protein 44 -2.38218
UBIAD1 UbiA prenyltransferase domain containing 1 -2.38217
PTCHD2 patched domain containing 2 -2.38216
MIR4632 microRNA 4632 -2.38215
RNU6-48P RNA, U6 small nuclear 48, pseudogene -2.38212
C1ORF158 chromosome 1 open reading frame 158 -2.38205
AADACL4 arylacetamide deacetylase-like 4 -2.382
DHRS3 dehydrogenase/reductase (SDR family) member 3 -2.382
PRAMEF12 PRAME family member 12 -2.38191
RNU6ATAC RNA, U6atac small nuclear (U12-dependent splicing) -2.3813
DRAXIN dorsal inhibitory axon guidance protein -2.37032
NPPA natriuretic peptide A -2.37024
NPPB natriuretic peptide B -2.37024
NPPA-AS1 NPPA antisense RNA 1 -2.37024
KIAA2013 KIAA2013 -2.37017
UBE2NL ubiquitin-conjugating enzyme E2N-like (gene/pseudogene) -2.3514
SLIT1 slit homolog 1 (Drosophila) -2.3514
ACAD11 acyl-CoA dehydrogenase family, member 11 -2.3435
NPHP3-ACAD11 NPHP3-ACAD11 readthrough (NMD candidate) -2.34326
LOC100130417 uncharacterized LOC100130417 -2.31832
LINC00926 long intergenic non-protein coding RNA 926 -2.31371
DNER delta/notch-like EGF repeat containing -2.30387
MIR551A microRNA 551a -2.28664
TPRG1L tumor protein p63 regulated 1-like -2.28413
WRAP73 WD repeat containing, antisense to TP73 -2.28413
TYW1 tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) -2.27825
ANKS1B ankyrin repeat and sterile alpha motif domain containing 1B -2.2656
LOC100129534 small nuclear ribonucleoprotein polypeptide N pseudogene -2.26363
PGD phosphogluconate dehydrogenase -2.24717
CORT cortistatin -2.24715
APITD1-CORT APITD1-CORT readthrough -2.24715
APITD1 apoptosis-inducing, TAF9-like domain 1 -2.24715
DFFA DNA fragmentation factor, 45kDa, alpha polypeptide -2.24712
AADACL3 arylacetamide deacetylase-like 3 -2.23573
TNFRSF1B tumor necrosis factor receptor superfamily, member 1B -2.21958
MIIP migration and invasion inhibitory protein -2.21957
AGTRAP angiotensin II receptor-associated protein -2.21286
CLCN6 chloride channel, voltage-sensitive 6 -2.2128
MTHFR methylenetetrahydrofolate reductase (NAD(P)H) -2.2128
PLOD1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 -2.21131
POLR3B polymerase (RNA) III (DNA directed) polypeptide B -2.20312
ADGRG2 adhesion G protein-coupled receptor G2 -2.20312
JAKMIP3 Janus kinase and microtubule interacting protein 3 -2.20279
FAM41C family with sequence similarity 41, member C -2.18309
WDR5 WD repeat domain 5 -2.14837
TNFRSF8 tumor necrosis factor receptor superfamily, member 8 -2.10404
MFN2 mitofusin 2 -2.0991
UBE4B ubiquitination factor E4B -2.09705
MORN1 MORN repeat containing 1 -2.08755
LINC00115 long intergenic non-protein coding RNA 115 -2.06536
ARHGEF16 Rho guanine nucleotide exchange factor (GEF) 16 -2.05998
MEGF6 multiple EGF-like-domains 6 -2.05543
TCF12 transcription factor 12 -2.0548
SLC8A1 solute carrier family 8 (sodium/calcium exchanger), member 1 -2.00401
PGM2 phosphoglucomutase 2 -1.98696
CASZ1 castor zinc finger 1 -1.98194
PRAMEF10 PRAME family member 10 -1.98115
PRAMEF4 PRAME family member 4 -1.98115
KIF1B kinesin family member 1B -1.97724
LINC01128 long intergenic non-protein coding RNA 1128 -1.97281
TBC1D22A TBC1 domain family, member 22A -1.97142
CNBD1 cyclic nucleotide binding domain containing 1 -1.95903
C1ORF233 chromosome 1 open reading frame 233 -1.92924
MIB2 mindbomb E3 ubiquitin protein ligase 2 -1.92924
SPANXN2 SPANX family, member N2 -1.92896
CDH18 cadherin 18, type 2 -1.92381
KCNK2 potassium channel, two pore domain subfamily K, member 2 -1.90541
OR51A7 olfactory receptor, family 51, subfamily A, member 7 -1.90434
CPTP ceramide-1-phosphate transfer protein -1.8874
TAS1R3 taste receptor, type 1, member 3 -1.8874
DVL1 dishevelled segment polarity protein 1 -1.88721
PUSL1 pseudouridylate synthase-like 1 -1.88698
CPSF3L cleavage and polyadenylation specific factor 3-like -1.88698
MXRA8 matrix-remodelling associated 8 -1.88698
SCNN1D sodium channel, non voltage gated 1 delta subunit -1.88693
ACAP3 ArfGAP with coiled-coil, ankyrin repeat and PH domains 3 -1.88613
SSU72 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) -1.88173
TMEM240 transmembrane protein 240 -1.88146
ATAD3A ATPase family, AAA domain containing 3A -1.88146
CDC37L1 cell division cycle 37-like 1 -1.88027
CGNL1 cingulin-like 1 -1.8563
TP73 tumor protein p73 -1.8444
PRKCZ protein kinase C, zeta -1.8349
MRPL20 mitochondrial ribosomal protein L20 -1.82919
LOC148413 uncharacterized LOC148413 -1.82919
CCNL2 cyclin L2 -1.82919
AURKAIP1 aurora kinase A interacting protein 1 -1.82899
VWA1 von Willebrand factor A domain containing 1 -1.82875
TMEM88B transmembrane protein 88B -1.82875
ANKRD65 ankyrin repeat domain 65 -1.82875
TMEM52 transmembrane protein 52 -1.78844
CALML6 calmodulin-like 6 -1.78844
ISPD isoprenoid synthase domain containing -1.78805
ATAD3C ATPase family, AAA domain containing 3C -1.77813
ATAD3B ATPase family, AAA domain containing 3B -1.77805
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -1.77727
HNRNPCL2 heterogeneous nuclear ribonucleoprotein C-like 2 -1.75841
GABRD gamma-aminobutyric acid (GABA) A receptor, delta -1.74894
NADK NAD kinase -1.74319
HLA-DQB1 major histocompatibility complex, class II, DQ beta 1 -1.70864
OR4M2 olfactory receptor, family 4, subfamily M, member 2 -1.70746
VPS13D vacuolar protein sorting 13 homolog D (S. cerevisiae) -1.64503
IRAK2 interleukin-1 receptor-associated kinase 2 -1.59141
AKIRIN1 akirin 1 -1.57997
SLC35E2B solute carrier family 35, member E2B -1.56763
MMP23B matrix metallopeptidase 23B -1.56731
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -1.54147
CFAP74 cilia and flagella associated protein 74 -1.53908
MAP2K3 mitogen-activated protein kinase kinase 3 -1.5187
CDC42BPA CDC42 binding protein kinase alpha (DMPK-like) -1.51571
MMP23A matrix metallopeptidase 23A (pseudogene) -1.51131
CHRNA6 cholinergic receptor, nicotinic, alpha 6 (neuronal) -1.48734
THAP1 THAP domain containing, apoptosis associated protein 1 -1.48711
MIR4469 microRNA 4469 -1.48702
POTEA POTE ankyrin domain family, member A -1.47303
RNF170 ring finger protein 170 -1.46238
DKK4 dickkopf WNT signaling pathway inhibitor 4 -1.4612
VDAC3 voltage-dependent anion channel 3 -1.46106
KAT6A K(lysine) acetyltransferase 6A -1.45409
SMIM19 small integral membrane protein 19 -1.44705
FNTA farnesyltransferase, CAAX box, alpha -1.44547
HGSNAT heparan-alpha-glucosaminide N-acetyltransferase -1.44469
HOOK3 hook microtubule-tethering protein 3 -1.44392
POLB polymerase (DNA directed), beta -1.43795
CHRNB3 cholinergic receptor, nicotinic, beta 3 (neuronal) -1.43758
POMK protein-O-mannose kinase -1.4313
AP3M2 adaptor-related protein complex 3, mu 2 subunit -1.4278
LOC727924 uncharacterized LOC727924 -1.42771
SLC20A2 solute carrier family 20 (phosphate transporter), member 2 -1.41706
LOC100130964 ADAM metallopeptidase domain 3A-like -1.41106
PRAMEF11 PRAME family member 11 -1.41088
PLAT plasminogen activator, tissue -1.40714
MIR486-1 microRNA 486-1 -1.4071
NKX6-3 NK6 homeobox 3 -1.40667
CDCA7L cell division cycle associated 7-like -1.40271
GINS4 GINS complex subunit 4 (Sld5 homolog) -1.40213
LINC00965 long intergenic non-protein coding RNA 965 -1.39543
GOLGA7 golgin A7 -1.3825
ADGRD1 adhesion G protein-coupled receptor D1 -1.38224
PPAPDC1B phosphatidic acid phosphatase type 2 domain containing 1B -1.37257
STAR steroidogenic acute regulatory protein -1.37121
LSM1 LSM1, U6 small nuclear RNA associated -1.37114
BAG4 BCL2-associated athanogene 4 -1.37093
EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 -1.36824
ASH2L ash2 (absent, small, or homeotic)-like (Drosophila) -1.3677
LETM2 leucine zipper-EF-hand containing transmembrane protein 2 -1.36626
HTRA4 HtrA serine peptidase 4 -1.35873
TM2D2 TM2 domain containing 2 -1.35873
IKBKB inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta -1.35778
KIR3DL1 killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 1 -1.35498
DDHD2 DDHD domain containing 2 -1.35496
ADRB3 adrenoceptor beta 3 -1.35417
USP17L4 ubiquitin specific peptidase 17-like family member 4 -1.35262
USP17L1 ubiquitin specific peptidase 17-like family member 1 -1.35136
IDO1 indoleamine 2,3-dioxygenase 1 -1.35072
ADAM32 ADAM metallopeptidase domain 32 -1.34775
PEX14 peroxisomal biogenesis factor 14 -1.34545
PLEKHA2 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 -1.3406
ADAM18 ADAM metallopeptidase domain 18 -1.34029
CDK11A cyclin-dependent kinase 11A -1.33737
CDK11B cyclin-dependent kinase 11B -1.33737
GOT1L1 glutamic-oxaloacetic transaminase 1-like 1 -1.33665
ANKRD36B ankyrin repeat domain 36B -1.33625
ZNF703 zinc finger protein 703 -1.33539
LOC728024 chromosome X open reading frame 56 pseudogene -1.33513
WHSC1L1 Wolf-Hirschhorn syndrome candidate 1-like 1 -1.33269
ADAM2 ADAM metallopeptidase domain 2 -1.3314
C8ORF4 chromosome 8 open reading frame 4 -1.33071
C8ORF86 chromosome 8 open reading frame 86 -1.32913
SFRP1 secreted frizzled-related protein 1 -1.32829
TACC1 transforming, acidic coiled-coil containing protein 1 -1.32424