HCC78 Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
Similar Terms
Downloads & Tools

Genes

637 genes with high or low copy number in HCC78 relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
CCDC113 coiled-coil domain containing 113 3.2803
CFAP20 cilia and flagella associated protein 20 3.2803
SNORA76A small nucleolar RNA, H/ACA box 76A 3.2803
DKFZP434H168 uncharacterized LOC26077 3.2803
ZNF319 zinc finger protein 319 3.2803
ADGRG3 adhesion G protein-coupled receptor G3 3.2803
CETP cholesteryl ester transfer protein, plasma 3.2803
GOT2 glutamic-oxaloacetic transaminase 2, mitochondrial 3.2803
CCL17 chemokine (C-C motif) ligand 17 3.2803
MT1JP metallothionein 1J, pseudogene 3.2803
MMP15 matrix metallopeptidase 15 (membrane-inserted) 3.2803
PLLP plasmolipin 3.2803
ADGRG5 adhesion G protein-coupled receptor G5 3.2803
SETD6 SET domain containing 6 3.2803
OGFOD1 2-oxoglutarate and iron-dependent oxygenase domain containing 1 3.2803
NDRG4 NDRG family member 4 3.2803
MIR3935 microRNA 3935 3.2803
CIAPIN1 cytokine induced apoptosis inhibitor 1 3.2803
POLR2C polymerase (RNA) II (DNA directed) polypeptide C, 33kDa 3.2803
NUDT21 nudix (nucleoside diphosphate linked moiety X)-type motif 21 3.2803
ADGRG1 adhesion G protein-coupled receptor G1 3.2803
MT1B metallothionein 1B 3.2803
MT1A metallothionein 1A 3.2803
SLC12A3 solute carrier family 12 (sodium/chloride transporter), member 3 3.2803
GINS3 GINS complex subunit 3 (Psf3 homolog) 3.2803
BBS2 Bardet-Biedl syndrome 2 3.2803
CCL22 chemokine (C-C motif) ligand 22 3.2803
RSPRY1 ring finger and SPRY domain containing 1 3.2803
NLRC5 NLR family, CARD domain containing 5 3.2803
DOK4 docking protein 4 3.2803
TEPP testis, prostate and placenta expressed 3.2803
PRSS54 protease, serine, 54 3.2803
AMFR autocrine motility factor receptor, E3 ubiquitin protein ligase 3.2803
MT1X metallothionein 1X 3.2803
USB1 U6 snRNA biogenesis 1 3.2803
MT1G metallothionein 1G 3.2803
MT1F metallothionein 1F 3.2803
MT1E metallothionein 1E 3.2803
MT1H metallothionein 1H 3.2803
ARL2BP ADP-ribosylation factor-like 2 binding protein 3.2803
MT1M metallothionein 1M 3.2803
MT1L metallothionein 1L (gene/pseudogene) 3.2803
MT2A metallothionein 2A 3.2803
LOC283856 uncharacterized LOC283856 3.2803
SNORA46 small nucleolar RNA, H/ACA box 46 3.2803
CNGB1 cyclic nucleotide gated channel beta 1 3.2803
CES5A carboxylesterase 5A 3.2803
FAM192A family with sequence similarity 192, member A 3.2803
GNAO1 guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O 3.2803
SLC38A7 solute carrier family 38, member 7 3.2803
MT4 metallothionein 4 3.2803
HERPUD1 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 3.2803
CCDC102A coiled-coil domain containing 102A 3.2803
MT1DP metallothionein 1D, pseudogene (functional) 3.2803
MT3 metallothionein 3 3.2803
KIFC3 kinesin family member C3 3.2803
KATNB1 katanin p80 (WD repeat containing) subunit B 1 3.2803
MT1IP metallothionein 1I, pseudogene 3.2803
COQ9 coenzyme Q9 3.2803
CPNE2 copine II 3.2803
DRC7 dynein regulatory complex subunit 7 3.2803
CX3CL1 chemokine (C-X3-C motif) ligand 1 3.2803
CAPNS2 calpain, small subunit 2 3.22081
LPCAT2 lysophosphatidylcholine acyltransferase 2 3.22081
SPATA45 spermatogenesis associated 45 2.9245
CSNK2A2 casein kinase 2, alpha prime polypeptide 2.82665
MIR138-2 microRNA 138-2 2.7624
NUP93 nucleoporin 93kDa 2.59998
CNOT1 CCR4-NOT transcription complex, subunit 1 2.59998
NHSL2 NHS-like 2 2.59998
APOOP5 apolipoprotein O pseudogene 5 2.59998
SLC6A2 solute carrier family 6 (neurotransmitter transporter), member 2 2.59733
CES1P2 carboxylesterase 1 pseudogene 2 2.5969
CES1P1 carboxylesterase 1 pseudogene 1 2.5097
ASB17 ankyrin repeat and SOCS box containing 17 2.38007
FUBP1 far upstream element (FUSE) binding protein 1 2.35572
NEXN nexilin (F actin binding protein) 2.35508
FAM73A family with sequence similarity 73, member A 2.35475
ERICH3 glutamate-rich 3 2.25651
MSH4 mutS homolog 4 2.25084
SNORD45A small nucleolar RNA, C/D box 45A 2.25072
SNORD45C small nucleolar RNA, C/D box 45C 2.25072
SNORD45B small nucleolar RNA, C/D box 45B 2.25066
ACADM acyl-CoA dehydrogenase, C-4 to C-12 straight chain 2.25066
RABGGTB Rab geranylgeranyltransferase, beta subunit 2.25066
LHX8 LIM homeobox 8 2.25055
PIGK phosphatidylinositol glycan anchor biosynthesis, class K 2.23169
FPGT fucose-1-phosphate guanylyltransferase 2.22851
USP33 ubiquitin specific peptidase 33 2.20486
MIR548W microRNA 548w 2.18113
PPL periplakin 2.1625
NAV3 neuron navigator 3 2.1318
SLC44A5 solute carrier family 44, member 5 2.12909
ST6GALNAC3 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 2.10307
ZZZ3 zinc finger, ZZ-type containing 3 2.09519
ST6GALNAC5 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 2.07302
AK5 adenylate kinase 5 2.04779
NAGPA-AS1 NAGPA antisense RNA 1 2.02885
TYW3 tRNA-yW synthesizing protein 3 homolog (S. cerevisiae) 2.01944
NAGPA N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase 1.9538
ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 1.95334
EEF2KMT eukaryotic elongation factor 2 lysine methyltransferase 1.95334
C16ORF89 chromosome 16 open reading frame 89 1.95333
SEC14L5 SEC14-like 5 (S. cerevisiae) 1.9347
UBE2U ubiquitin-conjugating enzyme E2U (putative) 1.87414
FPGT-TNNI3K FPGT-TNNI3K readthrough 1.83751
TNNI3K TNNI3 interacting kinase 1.83751
CASC16 cancer susceptibility candidate 16 (non-protein coding) 1.83447
CRYZ crystallin, zeta (quinone reductase) 1.83182
IRX3 iroquois homeobox 3 1.82466
LOC643802 u3 small nucleolar ribonucleoprotein protein MPP10-like 1.80809
AKTIP AKT interacting protein 1.80789
SALL1 spalt-like transcription factor 1 1.79892
TOX3 TOX high mobility group box family member 3 1.78511
CNEP1R1 CTD nuclear envelope phosphatase 1 regulatory subunit 1 1.77861
HEATR3 HEAT repeat containing 3 1.77852
IRX6 iroquois homeobox 6 1.77782
MMP2 matrix metallopeptidase 2 1.77734
CRNDE colorectal neoplasia differentially expressed (non-protein coding) 1.77372
IRX5 iroquois homeobox 5 1.77372
RPGRIP1L RPGRIP1-like 1.76254
CYLD cylindromatosis (turban tumor syndrome) 1.75196
NOD2 nucleotide-binding oligomerization domain containing 2 1.75156
SNX20 sorting nexin 20 1.75128
KLK8 kallikrein-related peptidase 8 1.7496
KLK11 kallikrein-related peptidase 11 1.7496
KLK9 kallikrein-related peptidase 9 1.7496
KLK10 kallikrein-related peptidase 10 1.7496
KLK12 kallikrein-related peptidase 12 1.7496
CTU1 cytosolic thiouridylase subunit 1 1.74957
SIGLEC7 sialic acid binding Ig-like lectin 7 1.7486
SIGLEC17P sialic acid binding Ig-like lectin 17, pseudogene 1.74836
CD33 CD33 molecule 1.7482
SIGLECL1 SIGLEC family like 1 1.7482
CBLN1 cerebellin 1 precursor 1.74183
C16ORF78 chromosome 16 open reading frame 78 1.74174
SIGLEC8 sialic acid binding Ig-like lectin 8 1.74037
LINC00919 long intergenic non-protein coding RNA 919 1.73937
C16ORF97 chromosome 16 open reading frame 97 1.73932
NKD1 naked cuticle homolog 1 (Drosophila) 1.71105
KLK14 kallikrein-related peptidase 14 1.70768
KLK13 kallikrein-related peptidase 13 1.70766
SIGLEC9 sialic acid binding Ig-like lectin 9 1.70677
IGLON5 IgLON family member 5 1.7064
FTO fat mass and obesity associated 1.70612
ETFB electron-transfer-flavoprotein, beta polypeptide 1.70096
C19ORF84 chromosome 19 open reading frame 84 1.70096
VSIG10L V-set and immunoglobulin domain containing 10 like 1.70096
LIM2 lens intrinsic membrane protein 2, 19kDa 1.70096
NKG7 natural killer cell granule protein 7 1.70096
CLDND2 claudin domain containing 2 1.70096
LOC100129083 uncharacterized LOC100129083 1.70039
SIGLEC10 sialic acid binding Ig-like lectin 10 1.70039
CEACAM18 carcinoembryonic antigen-related cell adhesion molecule 18 1.69925
PAPD5 PAP associated domain containing 5 1.69358
MIRLET7E microRNA let-7e 1.68462
MIR125A microRNA 125a 1.68462
MIR99B microRNA 99b 1.68462
SPACA6P sperm acrosome associated 6, pseudogene 1.68455
ADCY7 adenylate cyclase 7 1.68078
BRD7 bromodomain containing 7 1.68054
CHD9 chromodomain helicase DNA binding protein 9 1.67787
N4BP1 NEDD4 binding protein 1 1.67623
LINC01530 long intergenic non-protein coding RNA 1530 1.66518
SHCBP1 SHC SH2-domain binding protein 1 1.66434
SIGLEC6 sialic acid binding Ig-like lectin 6 1.66202
SIGLEC12 sialic acid binding Ig-like lectin 12 (gene/pseudogene) 1.66194
ZNF423 zinc finger protein 423 1.65775
ZNF766 zinc finger protein 766 1.65513
MIR643 microRNA 643 1.65513
ZNF480 zinc finger protein 480 1.65505
ZNF610 zinc finger protein 610 1.64575
HAS1 hyaluronan synthase 1 1.64112
FPR1 formyl peptide receptor 1 1.64097
NETO2 neuropilin (NRP) and tolloid (TLL)-like 2 1.63649
LOC100507577 uncharacterized LOC100507577 1.63139
SIAH1 siah E3 ubiquitin protein ligase 1 1.63139
LONP2 lon peptidase 2, peroxisomal 1.63117
ZNF175 zinc finger protein 175 1.62987
ABCC12 ATP-binding cassette, sub-family C (CFTR/MRP), member 12 1.62528
ABCC11 ATP-binding cassette, sub-family C (CFTR/MRP), member 11 1.6245
DNAJA2 DnaJ (Hsp40) homolog, subfamily A, member 2 1.62144
PPP2R1A protein phosphatase 2, regulatory subunit A, alpha 1.61684
ZNF611 zinc finger protein 611 1.61244
ZNF600 zinc finger protein 600 1.61244
ZNF83 zinc finger protein 83 1.61166
ZNF528 zinc finger protein 528 1.61154
ZNF880 zinc finger protein 880 1.61154
ZNF137P zinc finger protein 137, pseudogene 1.61105
ZNF701 zinc finger protein 701 1.61097
SIGLEC5 sialic acid binding Ig-like lectin 5 1.61047
HDIP1 HDAC and MIER1 interacting protein 1 1.60631
ZNF836 zinc finger protein 836 1.59615
ORC6 origin recognition complex, subunit 6 1.59554
MYLK3 myosin light chain kinase 3 1.59554
VPS35 vacuolar protein sorting 35 homolog (S. cerevisiae) 1.59554
GPT2 glutamic pyruvate transaminase (alanine aminotransferase) 2 1.59554
FPR2 formyl peptide receptor 2 1.59449
ZNF320 zinc finger protein 320 1.59247
LRRIQ3 leucine-rich repeats and IQ motif containing 3 1.58782
CACTIN cactin, spliceosome C complex subunit 1.58602
FZR1 fizzy/cell division cycle 20 related 1 (Drosophila) 1.58587
CACTIN-AS1 CACTIN antisense RNA 1 1.58582
TBXA2R thromboxane A2 receptor 1.58582
GIPC3 GIPC PDZ domain containing family, member 3 1.58578
DOHH deoxyhypusine hydroxylase/monooxygenase 1.58578
C19ORF71 chromosome 19 open reading frame 71 1.58554
MFSD12 major facilitator superfamily domain containing 12 1.58554
HMG20B high mobility group 20B 1.58554
PIP5K1C phosphatidylinositol-4-phosphate 5-kinase, type I, gamma 1.58532
TJP3 tight junction protein 3 1.58513
BIRC8 baculoviral IAP repeat containing 8 1.58487
FAM90A27P family with sequence similarity 90, member A27, pseudogene 1.58487
PCDH15 protocadherin-related 15 1.58468
ZFR2 zinc finger RNA binding protein 2 1.58108
RAX2 retina and anterior neural fold homeobox 2 1.58082
MRPL54 mitochondrial ribosomal protein L54 1.58082
MATK megakaryocyte-associated tyrosine kinase 1.58082
APBA3 amyloid beta (A4) precursor protein-binding, family A, member 3 1.58082
SMIM24 small integral membrane protein 24 1.5806
ZNF534 zinc finger protein 534 1.58016
ZNF160 zinc finger protein 160 1.57704
ZNF577 zinc finger protein 577 1.57181
ZNF808 zinc finger protein 808 1.57127
ZNF816 zinc finger protein 816 1.56352
MIR637 microRNA 637 1.5617
DAPK3 death-associated protein kinase 3 1.5617
SNORD37 small nucleolar RNA, C/D box 37 1.56165
EEF2 eukaryotic translation elongation factor 2 1.56165
NMRK2 nicotinamide riboside kinase 2 1.5611
ATCAY ataxia, cerebellar, Cayman type 1.56092
ANKRD26P1 ankyrin repeat domain 26 pseudogene 1 1.55893
ITFG1 integrin alpha FG-GAP repeat containing 1 1.55753
S1PR4 sphingosine-1-phosphate receptor 4 1.5564
GNA15 guanine nucleotide binding protein (G protein), alpha 15 (Gq class) 1.5564
GNA11 guanine nucleotide binding protein (G protein), alpha 11 (Gq class) 1.55631
VN1R4 vomeronasal 1 receptor 4 1.55541
VN1R2 vomeronasal 1 receptor 2 1.55537
ZNF845 zinc finger protein 845 1.5549
ZNF677 zinc finger protein 677 1.55489
ZNF765 zinc finger protein 765 1.55471
ZNF525 zinc finger protein 525 1.55396
TLE6 transducin-like enhancer of split 6 1.55293
SGTA small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha 1.55267
SLC39A3 solute carrier family 39 (zinc transporter), member 3 1.55267
DIRAS1 DIRAS family, GTP-binding RAS-like 1 1.55267
THOP1 thimet oligopeptidase 1 1.55267
ZNF554 zinc finger protein 554 1.55267
ZNF556 zinc finger protein 556 1.55267
ZNF555 zinc finger protein 555 1.55267
ZNF77 zinc finger protein 77 1.55253
ZNF57 zinc finger protein 57 1.55253
AES amino-terminal enhancer of split 1.55247
TLE2 transducin-like enhancer of split 2 1.55237
ZNF702P zinc finger protein 702, pseudogene 1.54916
FPR3 formyl peptide receptor 3 1.54891
ZNF347 zinc finger protein 347 1.54829
ZNF415 zinc finger protein 415 1.54829
ZNF667-AS1 ZNF667 antisense RNA 1 (head to head) 1.54784
ZNF471 zinc finger protein 471 1.54784
ZNF613 zinc finger protein 613 1.54592
ZNF578 zinc finger protein 578 1.54284
TRAPPC2P1 1.53882
ZNF547 zinc finger protein 547 1.53882
ZNF304 zinc finger protein 304 1.53882
ZNF543 zinc finger protein 543 1.53882
ZNF548 zinc finger protein 548 1.53882
ZBTB7A zinc finger and BTB domain containing 7A 1.53697
PIAS4 protein inhibitor of activated STAT, 4 1.53666
NCLN nicalin 1.53429
NFIC nuclear factor I/C (CCAAT-binding transcription factor) 1.53301
ZNF460 zinc finger protein 460 1.52914
PEG3 paternally expressed 3 1.52749
PEG3-AS1 PEG3 antisense RNA 1 1.52749
MIMT1 MER1 repeat containing imprinted transcript 1 (non-protein coding) 1.52723
ZNF616 zinc finger protein 616 1.52186
ZNF667 zinc finger protein 667 1.51998
ZNF649 zinc finger protein 649 1.51896
CELF5 CUGBP, Elav-like family member 5 1.51678
ZNF835 zinc finger protein 835 1.51332
SMIM17 small integral membrane protein 17 1.51332
LILRP2 leukocyte immunoglobulin-like receptor pseudogene 2 1.51191
ZNF582 zinc finger protein 582 1.51009
TPM3P9 tropomyosin 3 pseudogene 9 1.50943
ZNF816-ZNF321P ZNF816-ZNF321P readthrough 1.50798
CES1 carboxylesterase 1 1.50601
ZNF542P zinc finger protein 542, pseudogene 1.5038
ZNF582-AS1 ZNF582 antisense RNA 1 (head to head) 1.50227
ZNF583 zinc finger protein 583 1.50227
ZIM2 zinc finger, imprinted 2 1.50166
ZNF761 zinc finger protein 761 1.50061
AURKC aurora kinase C 1.50021
ZNF805 zinc finger protein 805 1.50021
ZNF813 zinc finger protein 813 1.49948
ZNF321P zinc finger protein 321, pseudogene 1.49792
ZFP28 ZFP28 zinc finger protein 1.49562
ZNF841 zinc finger protein 841 1.49486
ZNF614 zinc finger protein 614 1.49486
ZNF350 zinc finger protein 350 1.49369
PLS3 plastin 3 1.49179
ZNF665 zinc finger protein 665 1.48768
LILRB1 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1 1.48763
LILRB4 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 4 1.48753
DUXA double homeobox A 1.48721
ZIM3 zinc finger, imprinted 3 1.48721
NLRP7 NLR family, pyrin domain containing 7 1.48552
NCR1 natural cytotoxicity triggering receptor 1 1.48552
SF3A2 splicing factor 3a, subunit 2, 66kDa 1.48415
PLEKHJ1 pleckstrin homology domain containing, family J member 1 1.48415
MIR1227 microRNA 1227 1.48415
MIR4321 microRNA 4321 1.48403
AMH anti-Mullerian hormone 1.48403
C19ORF35 chromosome 19 open reading frame 35 1.48381
OAZ1 ornithine decarboxylase antizyme 1 1.48381
JSRP1 junctional sarcoplasmic reticulum protein 1 1.48381
ZNF264 zinc finger protein 264 1.47939
LOC146481 1.47471
FCAR Fc fragment of IgA receptor 1.47347
NLRP5 NLR family, pyrin domain containing 5 1.47211
ZNF470 zinc finger protein 470 1.47211
USP29 ubiquitin specific peptidase 29 1.47196
EFNA2 ephrin-A2 1.47091
C19ORF24 chromosome 19 open reading frame 24 1.47007
LSM7 LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae) 1.46962
VSTM1 V-set and transmembrane domain containing 1 1.46856
TARM1 T cell-interacting, activating receptor on myeloid cells 1 1.46836
ZNF28 zinc finger protein 28 1.46835
GADD45B growth arrest and DNA-damage-inducible, beta 1.46803
TIMM13 translocase of inner mitochondrial membrane 13 homolog (yeast) 1.46707
LMNB2 lamin B2 1.46707
LILRA1 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 1 1.46468
PCSK4 proprotein convertase subtilisin/kexin type 4 1.46422
REEP6 receptor accessory protein 6 1.46422
ADAMTSL5 ADAMTS-like 5 1.46422
PLK5 polo-like kinase 5 1.46417
MBD3 methyl-CpG binding domain protein 3 1.46382
MEX3D mex-3 RNA binding family member D 1.46382
C19ORF25 chromosome 19 open reading frame 25 1.46379
APC2 adenomatosis polyposis coli 2 1.46348
DOT1L DOT1-like histone H3K79 methyltransferase 1.46138
NLRP2 NLR family, pyrin domain containing 2 1.46128
LINGO3 leucine rich repeat and Ig domain containing 3 1.46112
OSCAR osteoclast associated, immunoglobulin-like receptor 1.45892
ZSCAN5B zinc finger and SCAN domain containing 5B 1.45812
GALP galanin-like peptide 1.45781
MUM1 melanoma associated antigen (mutated) 1 1.45411
MYADM myeloid-associated differentiation marker 1.45307
LOC100130700 uncharacterized LOC100130700 1.45264
ZNF444 zinc finger protein 444 1.45206
ZNF432 zinc finger protein 432 1.44925
SPPL2B signal peptide peptidase like 2B 1.44774
CIRBP cold inducible RNA binding protein 1.44748
CIRBP-AS1 CIRBP antisense RNA 1 1.44748
DAZAP1 DAZ associated protein 1 1.44679
GAMT guanidinoacetate N-methyltransferase 1.44647
UQCR11 ubiquinol-cytochrome c reductase, complex III subunit XI 1.44499
ZNF615 zinc finger protein 615 1.44458
ZCCHC12 zinc finger, CCHC domain containing 12 1.44412
SLC35D1 solute carrier family 35 (UDP-GlcA/UDP-GalNAc transporter), member D1 1.44324
DPRX divergent-paired related homeobox 1.44293
LILRA2 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 1.44286
KIR3DX1 killer cell immunoglobulin-like receptor, three domains, X1 1.44278
LOC284379 solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 pseudogene 1.44053
LOC283914 1.43994
PIN1P1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 1.43884
ZNF628 zinc finger protein 628 1.43854
NAT14 N-acetyltransferase 14 (GCN5-related, putative) 1.43839
ISOC2 isochorismatase domain containing 2 1.43835
UBE2S ubiquitin-conjugating enzyme E2S 1.43835
SHISA7 shisa family member 7 1.43835
MIR520G microRNA 520g 1.43783
MIR517B microRNA 517b 1.43783
MIR520D microRNA 520d 1.43783
MIR518D microRNA 518d 1.43781
MIR517C microRNA 517c 1.43781
MIR518A2 microRNA 518a-2 1.43781
MIR516B1 microRNA 516b-1 1.43781
MIR518E microRNA 518e 1.43779
MIR521-1 microRNA 521-1 1.43779
MIR522 microRNA 522 1.43779
MIR519A1 microRNA 519a-1 1.43779
MIR518A1 microRNA 518a-1 1.43779
MIR527 microRNA 527 1.43779
MIR516A1 microRNA 516a-1 1.43779
MIR520H microRNA 520h 1.43779
LAIR2 leukocyte-associated immunoglobulin-like receptor 2 1.43773
NDUFA3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa 1.43727
ZNF579 zinc finger protein 579 1.43707
FIZ1 FLT3-interacting zinc finger 1 1.43707
TMPRSS9 transmembrane protease, serine 9 1.4364
HHLA3 HERV-H LTR-associating 3 1.43357
LRRC40 leucine rich repeat containing 40 1.43332
NDUFS7 NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase) 1.43268
IL23R interleukin 23 receptor 1.43258
CACNG6 calcium channel, voltage-dependent, gamma subunit 6 1.43217
CACNG8 calcium channel, voltage-dependent, gamma subunit 8 1.43213
MIR935 microRNA 935 1.43213
NLRP13 NLR family, pyrin domain containing 13 1.43205
IL12RB2 interleukin 12 receptor, beta 2 1.43197
SBK3 SH3 domain binding kinase family, member 3 1.43189
SBK2 SH3 domain binding kinase family, member 2 1.43189
GP6 glycoprotein VI (platelet) 1.43117
ZNF787 zinc finger protein 787 1.4307
NLRP4 NLR family, pyrin domain containing 4 1.43039
SERBP1 SERPINE1 mRNA binding protein 1 1.42931
LRRC7 leucine rich repeat containing 7 1.42907
NEGR1-IT1 NEGR1 intronic transcript 1 1.42797
NLRP11 NLR family, pyrin domain containing 11 1.42756
NLRP8 NLR family, pyrin domain containing 8 1.42732
MIR1283-2 microRNA 1283-2 1.42723
MIR516A2 microRNA 516a-2 1.42709
C1ORF141 chromosome 1 open reading frame 141 1.427
LILRA3 leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 3 1.42594
TMEM86B transmembrane protein 86B 1.42468
PPP6R1 protein phosphatase 6, regulatory subunit 1 1.42449
RPS15 ribosomal protein S15 1.42448
MIR519A2 microRNA 519a-2 1.42418
DOCK11 dedicator of cytokinesis 11 1.42322
ZNF71 zinc finger protein 71 1.42297
LONRF3 LON peptidase N-terminal domain and ring finger 3 1.4228
MIER1 mesoderm induction early response 1, transcriptional regulator 1.42242
LENG1 leukocyte receptor cluster (LRC) member 1 1.42186
TMC4 transmembrane channel-like 4 1.42186
HNRNPA1P10 heterogeneous nuclear ribonucleoprotein A1 pseudogene 10 1.42186
CNOT3 CCR4-NOT transcription complex, subunit 3 1.42186
MIR498 microRNA 498 1.4217
MIR1323 microRNA 1323 1.4217
MIR512-2 microRNA 512-2 1.4217
MIR512-1 microRNA 512-1 1.4217
WDR78 WD repeat domain 78 1.42166
MIR520E microRNA 520e 1.42163
MIR519E microRNA 519e 1.42163
MIR515-2 microRNA 515-2 1.42163
MIR515-1 microRNA 515-1 1.42163
MIR519C microRNA 519c 1.42161
MIR523 microRNA 523 1.42161
MIR517A microRNA 517a 1.42161
MIR525 microRNA 525 1.42161
MIR520C microRNA 520c 1.42161
MIR520A microRNA 520a 1.42161
MIR521-2 microRNA 521-2 1.42161
MIR519D microRNA 519d 1.42161
MIR520F microRNA 520f 1.42161
MIR526A1 microRNA 526a-1 1.42161
MIR524 microRNA 524 1.42161
MIR518B microRNA 518b 1.42161
MIR518F microRNA 518f 1.42161
MIR518C microRNA 518c 1.42161
MIR520B microRNA 520b 1.42161
MIR526B microRNA 526b 1.42161
MIR1283-1 microRNA 1283-1 1.42161
MBOAT7 membrane bound O-acyltransferase domain containing 7 1.42154
TMEM150B transmembrane protein 150B 1.41924
DEPDC1 DEP domain containing 1 1.41923
RPE65 retinal pigment epithelium-specific protein 65kDa 1.41923
HSPBP1 HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1 1.41885
MIR186 microRNA 186 1.41792
ZRANB2 zinc finger, RAN-binding domain containing 2 1.4179
ZRANB2-AS1 ZRANB2 antisense RNA 1 1.41785
ZNF331 zinc finger protein 331 1.4178
SSC5D scavenger receptor cysteine rich family, 5 domains 1.41748
RPL28 ribosomal protein L28 1.41705
BRSK1 BR serine/threonine kinase 1 1.417
COX6B2 cytochrome c oxidase subunit VIb polypeptide 2 (testis) 1.41697
TMEM238 transmembrane protein 238 1.41697
TMEM190 transmembrane protein 190 1.41697
SUV420H2 suppressor of variegation 4-20 homolog 2 (Drosophila) 1.41697
IL11 interleukin 11 1.41697
FAM71E2 family with sequence similarity 71, member E2 1.41697
MIR526A2 microRNA 526a-2 1.41658
MIR516B2 microRNA 516b-2 1.41658
TFPT TCF3 (E2A) fusion partner (in childhood Leukemia) 1.41653
PRPF31 pre-mRNA processing factor 31 1.4164
ZNF524 zinc finger protein 524 1.41604
ABHD17A abhydrolase domain containing 17A 1.41492
BTBD2 BTB (POZ) domain containing 2 1.413
ANKRD13C ankyrin repeat domain 13C 1.41248
CTH cystathionine gamma-lyase 1.41209
TSEN34 TSEN34 tRNA splicing endonuclease subunit 1.41139
CACNG7 calcium channel, voltage-dependent, gamma subunit 7 1.41103
PRKCG protein kinase C, gamma 1.41094
NLRP12 NLR family, pyrin domain containing 12 1.40979
MIR373 microRNA 373 1.40975
MIR372 microRNA 372 1.40975
MIR371A microRNA 371a 1.40975
MIR371B microRNA 371b 1.40975
GNG7 guanine nucleotide binding protein (G protein), gamma 7 1.40809
ATP5D ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit 1.40588
MIDN midnolin 1.40588
LUZP4 leucine zipper protein 4 1.40442
RBMXL3 RNA binding motif protein, X-linked-like 3 1.40439
CDC42EP5 CDC42 effector protein (Rho GTPase binding) 5 1.40314
LENG9 leukocyte receptor cluster (LRC) member 9 1.40314
LENG8 leukocyte receptor cluster (LRC) member 8 1.40295
ZSCAN5A zinc finger and SCAN domain containing 5A 1.40287
IL13RA1 interleukin 13 receptor, alpha 1 1.40263
TCF3 transcription factor 3 1.40243
WDR44 WD repeat domain 44 1.40241
MIR1277 microRNA 1277 1.40241
MIR519B microRNA 519b 1.40092
ZNF865 zinc finger protein 865 1.40012
MIR1262 microRNA 1262 1.39894
DIRAS3 DIRAS family, GTP-binding RAS-like 3 1.39847
LILRB5 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 5 1.39833
WLS wntless Wnt ligand secretion mediator 1.39786
LAIR1 leukocyte-associated immunoglobulin-like receptor 1 1.39705
LILRA4 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 4 1.39642
CCDC106 coiled-coil domain containing 106 1.396
U2AF2 U2 small nuclear RNA auxiliary factor 2 1.396
ZNF580 zinc finger protein 580 1.396
ZNF581 zinc finger protein 581 1.396
CSNK1G2-AS1 CSNK1G2 antisense RNA 1 1.39547
ADAT3 adenosine deaminase, tRNA-specific 3 1.39497
SCAMP4 secretory carrier membrane protein 4 1.39497
CSNK1G2 casein kinase 1, gamma 2 1.39272
ZNF468 zinc finger protein 468 1.39272
EPS8L1 EPS8-like 1 1.39249
SRSF11 serine/arginine-rich splicing factor 11 1.39242
RDH13 retinol dehydrogenase 13 (all-trans/9-cis) 1.3921
PTGER3 prostaglandin E receptor 3 (subtype EP3) 1.38884
IZUMO4 IZUMO family member 4 1.38655
GADD45A growth arrest and DNA-damage-inducible, alpha 1.38652
AP3D1 adaptor-related protein complex 3, delta 1 subunit 1.38645
C19ORF26 chromosome 19 open reading frame 26 1.38628
KLF16 Kruppel-like factor 16 1.38626
TNNT1 troponin T type 1 (skeletal, slow) 1.38609
PTPRH protein tyrosine phosphatase, receptor type, H 1.38602
SYT5 synaptotagmin V 1.38593
TNNI3 troponin I type 3 (cardiac) 1.38592
DNAAF3 dynein, axonemal, assembly factor 3 1.38589
PGRMC1 progesterone receptor membrane component 1 1.38237
GPX4 glutathione peroxidase 4 1.3823
ZNF784 zinc finger protein 784 1.38113
GNG12-AS1 GNG12 antisense RNA 1 1.38028
LILRA5 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5 1.38011
SBNO2 strawberry notch homolog 2 (Drosophila) 1.37989
GNG12 guanine nucleotide binding protein (G protein), gamma 12 1.37983
ATP8B3 ATPase, aminophospholipid transporter, class I, type 8B, member 3 1.37792
POLRMT polymerase (RNA) mitochondrial (DNA directed) 1.37678
HCN2 hyperpolarization activated cyclic nucleotide gated potassium channel 2 1.37678
FGF22 fibroblast growth factor 22 1.37673
RNF126 ring finger protein 126 1.37673
BSG basigin (Ok blood group) 1.37663
HMHA1 histocompatibility (minor) HA-1 1.37518
POLR2E polymerase (RNA) II (DNA directed) polypeptide E, 25kDa 1.37514
LILRB2 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 2 1.37477
LOC100288123 uncharacterized LOC100288123 1.37392
MIR1909 microRNA 1909 1.37392
REXO1 REX1, RNA exonuclease 1 homolog (S. cerevisiae) 1.37392
STK11 serine/threonine kinase 11 1.37363
RPS9 ribosomal protein S9 1.37211
MOB3A MOB kinase activator 3A 1.36863
SLC25A5-AS1 SLC25A5 antisense RNA 1 1.36834
SLC25A5 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 1.36834
LRCH2 leucine-rich repeats and calponin homology (CH) domain containing 2 1.36579
SEPT6 septin 6 1.36573
NKRF NFKB repressing factor 1.36572
ONECUT3 one cut homeobox 3 1.36572
IL13RA2 interleukin 13 receptor, alpha 2 1.36568
TTYH1 tweety family member 1 1.36516
GZMM granzyme M (lymphocyte met-ase 1) 1.36492
CDC34 cell division cycle 34 1.3648
KIAA1210 KIAA1210 1.36348
EPN1 epsin 1 1.3609
KLHL13 kelch-like family member 13 1.36041
CT83 cancer/testis antigen 83 1.35884
SLC6A14 solute carrier family 6 (amino acid transporter), member 14 1.35868
PRSS57 protease, serine, 57 1.35777
FSTL3 follistatin-like 3 (secreted glycoprotein) 1.35773
MIR4752 microRNA 4752 1.35617
PHKB phosphorylase kinase, beta 1.35596
CNN2 calponin 2 1.35501
PPP1R12C protein phosphatase 1, regulatory subunit 12C 1.35452
C2CD4C C2 calcium-dependent domain containing 4C 1.35088
MKNK2 MAP kinase interacting serine/threonine kinase 2 1.3507
RBL2 retinoblastoma-like 2 1.34947
MIR766 microRNA 766 1.34765
CXORF56 chromosome X open reading frame 56 1.34764
UBE2A ubiquitin-conjugating enzyme E2A 1.34764
TMEM259 transmembrane protein 259 1.34713
GRIN3B glutamate receptor, ionotropic, N-methyl-D-aspartate 3B 1.34713
MISP mitotic spindle positioning 1.3449
SHC2 SHC (Src homology 2 domain containing) transforming protein 2 1.34459
PALM paralemmin 1.34296
ZRANB2-AS2 ZRANB2 antisense RNA 2 (head to head) 1.34141
AGTR2 angiotensin II receptor, type 2 1.34084
ABCA7 ATP-binding cassette, sub-family A (ABC1), member 7 1.33902
WDR18 WD repeat domain 18 1.33726
RNF113A ring finger protein 113A 1.33019
NDUFA1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1, 7.5kDa 1.33019
UPF3B UPF3 regulator of nonsense transcripts homolog B (yeast) 1.33019
SOWAHD sosondowah ankyrin repeat domain family member D 1.33017
RPL39 ribosomal protein L39 1.33017
SNORA69 small nucleolar RNA, H/ACA box 69 1.33017
OR2T34 olfactory receptor, family 2, subfamily T, member 34 1.32978

low copy number

Symbol Name Standardized Value
PPAN peter pan homolog (Drosophila) -3.21049
PPAN-P2RY11 PPAN-P2RY11 readthrough -3.21049
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon -3.20999
AHCYL1 adenosylhomocysteinase-like 1 -2.78075
ANGPTL6 angiopoietin-like 6 -2.59447
HACD2 3-hydroxyacyl-CoA dehydratase 2 -2.55054
ZNF883 zinc finger protein 883 -2.52102
DNAH8 dynein, axonemal, heavy chain 8 -2.3514
ZNF490 zinc finger protein 490 -2.2872
PRKCA protein kinase C, alpha -2.17002
CDK14 cyclin-dependent kinase 14 -2.13787
ZNF630 zinc finger protein 630 -2.09288
SSX6 synovial sarcoma, X breakpoint 6 (pseudogene) -2.09288
HTRA1 HtrA serine peptidase 1 -2.04658
RNF150 ring finger protein 150 -2.01202
HPCAL1 hippocalcin-like 1 -2.0037
TMEM56-RWDD3 TMEM56-RWDD3 readthrough -1.98216
CEP112 centrosomal protein 112kDa -1.91676
LINC01310 long intergenic non-protein coding RNA 1310 -1.85051
SELT selenoprotein T -1.8111
H2BFWT H2B histone family, member W, testis-specific -1.80972
PGA3 pepsinogen 3, group I (pepsinogen A) -1.72391
PGA4 pepsinogen 4, group I (pepsinogen A) -1.72176
ERBB2 erb-b2 receptor tyrosine kinase 2 -1.67478
GOLGA6L4 golgin A6 family-like 4 -1.66448
GRHL2 grainyhead-like 2 (Drosophila) -1.63905
RBM47 RNA binding motif protein 47 -1.56545
ALK anaplastic lymphoma receptor tyrosine kinase -1.52334
SLCO1B3 solute carrier organic anion transporter family, member 1B3 -1.44279
BMP1 bone morphogenetic protein 1 -1.42499
LOC440300 chondroitin sulfate proteoglycan 4 pseudogene -1.41655
GOLGA2P7 golgin A2 pseudogene 7 -1.41653
DIP2C DIP2 disco-interacting protein 2 homolog C (Drosophila) -1.39762
NCK2 NCK adaptor protein 2 -1.3972
PSG1 pregnancy specific beta-1-glycoprotein 1 -1.3824
PSG10P pregnancy specific beta-1-glycoprotein 10, pseudogene -1.3819
PSG7 pregnancy specific beta-1-glycoprotein 7 (gene/pseudogene) -1.36384
PSG6 pregnancy specific beta-1-glycoprotein 6 -1.36381
LOC100289650 uncharacterized LOC100289650 -1.36141
PSG11 pregnancy specific beta-1-glycoprotein 11 -1.33506
UPK3BL uroplakin 3B-like -1.33078
POLR2J2 polymerase (RNA) II (DNA directed) polypeptide J2 -1.33009